Influence of Growth Medium on Diagnostic Characters of Aspergillus and Penicillium Species
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The Role of Earthworm Gut-Associated Microorganisms in the Fate of Prions in Soil
THE ROLE OF EARTHWORM GUT-ASSOCIATED MICROORGANISMS IN THE FATE OF PRIONS IN SOIL Von der Fakultät für Lebenswissenschaften der Technischen Universität Carolo-Wilhelmina zu Braunschweig zur Erlangung des Grades eines Doktors der Naturwissenschaften (Dr. rer. nat.) genehmigte D i s s e r t a t i o n von Taras Jur’evič Nechitaylo aus Krasnodar, Russland 2 Acknowledgement I would like to thank Prof. Dr. Kenneth N. Timmis for his guidance in the work and help. I thank Peter N. Golyshin for patience and strong support on this way. Many thanks to my other colleagues, which also taught me and made the life in the lab and studies easy: Manuel Ferrer, Alex Neef, Angelika Arnscheidt, Olga Golyshina, Tanja Chernikova, Christoph Gertler, Agnes Waliczek, Britta Scheithauer, Julia Sabirova, Oleg Kotsurbenko, and other wonderful labmates. I am also grateful to Michail Yakimov and Vitor Martins dos Santos for useful discussions and suggestions. I am very obliged to my family: my parents and my brother, my parents on low and of course to my wife, which made all of their best to support me. 3 Summary.....................................................………………………………………………... 5 1. Introduction...........................................................................................................……... 7 Prion diseases: early hypotheses...………...………………..........…......…......……….. 7 The basics of the prion concept………………………………………………….……... 8 Putative prion dissemination pathways………………………………………….……... 10 Earthworms: a putative factor of the dissemination of TSE infectivity in soil?.………. 11 Objectives of the study…………………………………………………………………. 16 2. Materials and Methods.............................…......................................................……….. 17 2.1 Sampling and general experimental design..................................................………. 17 2.2 Fluorescence in situ Hybridization (FISH)………..……………………….………. 18 2.2.1 FISH with soil, intestine, and casts samples…………………………….……... 18 Isolation of cells from environmental samples…………………………….………. -
Potato Dextrose Agar with Lecithin and Tween 80 (7575)
POTATO DEXTROSE AGAR w/ LECITHIN & TWEEN 80 (7575) Intended Use Potato Dextrose Agar w/ Lecithin & Tween 80 is used for the isolation of fungi from surfaces sanitized with quaternary ammonium compounds. Product Summary and Explanation Potato Dextrose Agar is a general purpose medium for yeasts and molds that can be supplemented with acid or antibiotics to inhibit bacterial growth. The nutritionally rich base (potato infusion) encourages mold sporulation and pigment production in some dermatophytes.1 Potato Dextrose Agar w/ Lecithin & Tween 80 is a modification of Potato Dextrose Agar. The addition of Lecithin and Tween 80 to Potato Dextrose Agar is used to neutralize antiseptics and disinfectants for environmental monitoring and other applications.2 Complete neutralization of disinfectants is important. Disinfectant carryover can cause a false no-growth test result. Principles of the Procedure Potato Infusion provides nitrogen and vitamin sources required for organism growth. Dextrose is included as a carbon source. Lecithin neutralizes quaternary ammonium compounds and ethanol, and Tween 80 neutralizes phenols, hexachlorophene, and formalin. Agar is the solidifying agent. Formula / Liter Potato Infusion (dehydrated) .................................................... 4 g Dextrose ................................................................................. 20 g Tween 80 .................................................................................. 5 g Lecithin.................................................................................. -
Food Microbiology
Food Microbiology Food Water Dairy Beverage Online Ordering Available Food, Water, Dairy, & Beverage Microbiology Table of Contents 1 Environmental Monitoring Contact Plates 3 Petri Plates 3 Culture Media for Air Sampling 4 Environmental Sampling Boot Swabs 6 Environmental Testing Swabs 8 Surface Sanitizers 8 Hand Sanitation 9 Sample Preparation - Dilution Vials 10 Compact Dry™ 12 HardyCHROM™ Chromogenic Culture Media 15 Prepared Media 24 Agar Plates for Membrane Filtration 26 CRITERION™ Dehydrated Culture Media 28 Pathogen Detection Environmental With Monitoring Contact Plates Baird Parker Agar Friction Lid For the selective isolation and enumeration of coagulase-positive staphylococci (Staphylococcus aureus) on environmental surfaces. HardyCHROM™ ECC 15x60mm contact plate, A chromogenic medium for the detection, 10/pk ................................................................................ 89407-364 differentiation, and enumeration of Escherichia coli and other coliforms from environmental surfaces (E. coli D/E Neutralizing Agar turns blue, coliforms turn red). For the enumeration of environmental organisms. 15x60mm plate contact plate, The media is able to neutralize most antiseptics 10/pk ................................................................................ 89407-354 and disinfectants that may inhibit the growth of environmental organisms. Malt Extract 15x60mm contact plate, Malt Extract is recommended for the cultivation and 10/pk ................................................................................89407-482 -
Potential Use of Soil-Born Fungi Isolated from Treated Soil in Indonesia to Degrade Glyphosate Herbicide
JOURNAL OF DEGRADED AND MINING LANDS MANAGEMENT ISSN: 2339-076X, Volume 1, Number 2 (January 2014): 63-68 Research Article Potential use of soil-born fungi isolated from treated soil in Indonesia to degrade glyphosate herbicide N. Arfarita1*, T. Imai 2, B. Prasetya3 1 Faculty of Agriculture, Malang Islamic University, Jl. M.T. Haryono, Malang 65144, Indonesia 2 Division of Environmental Science and Engineering, Graduate School of Science and Engineering, Yamaguchi University, Yamaguchi 755-8611, Japan 3 Faculty of Agriculture, Brawijaya University, Jl. Veteran, Malang 65145, Indonesia. * Corresponding author: [email protected] Abstract: The glyphosate herbicide is the most common herbicides used in palm-oil plantations and other agricultural in Indonesial. In 2020, Indonesian government to plan the development of oil palm plantations has reached 20 million hectares of which now have reached 6 million hectares. It means that a huge chemicals particularly glyphosate has been poured into the ground and continues to pollute the soil. However, there is no report regarding biodegradation of glyphosate-contaminated soils using fungal strain especially in Indonesia. This study was to observe the usage of Round Up as selection agent for isolation of soil-born fungi capable to grow on glyphosate as a sole source of phosphorus. Five fungal strains were able to grow consistently in the presence of glyphosate as the sole phosphorus source and identified as Aspergillus sp. strain KRP1, Fusarium sp. strain KRP2, Verticillium sp. strain KRP3, Acremoniumsp. strain GRP1 and Scopulariopsis sp. strain GRP2. This indicates as their capability to utilize and degrade this herbicide. We also used standard medium as control and get seventeen fungal strains. -
Effects of Growth Media on the Diversity of Culturable Fungi from Lichens
molecules Article Effects of Growth Media on the Diversity of Culturable Fungi from Lichens Lucia Muggia 1,*,†, Theodora Kopun 2,† and Martin Grube 2 1 Department of Life Sciences, University of Trieste, via Giorgieri 10, 34127 Trieste, Italy 2 Institute of Plant Science, Karl-Franzens University of Graz, Holteigasse 6, 8010 Graz, Austria; [email protected] (T.K.); [email protected] (M.G.) * Correspondence: [email protected] or [email protected]; Tel.: +39-04-0558-8825 † These authors contributed equally to the work. Academic Editor: Joel Boustie Received: 1 March 2017; Accepted: 11 May 2017; Published: 17 May 2017 Abstract: Microscopic and molecular studies suggest that lichen symbioses contain a plethora of associated fungi. These are potential producers of novel bioactive compounds, but strains isolated on standard media usually represent only a minor subset of these fungi. By using various in vitro growth conditions we are able to modulate and extend the fraction of culturable lichen-associated fungi. We observed that the presence of iron, glucose, magnesium and potassium in growth media is essential for the successful isolation of members from different taxonomic groups. According to sequence data, most isolates besides the lichen mycobionts belong to the classes Dothideomycetes and Eurotiomycetes. With our approach we can further explore the hidden fungal diversity in lichens to assist in the search of novel compounds. Keywords: Dothideomycetes; Eurotiomycetes; Leotiomycetes; nuclear ribosomal subunits DNA; nutrients; Sordariomycetes 1. Introduction Lichens are self-sustaining symbiotic associations of specialized fungi (the mycobionts), and green algae or cyanobacteria (the photobionts), which are located extracellularly within a matrix of fungal hyphae and from which the fungi derive carbon nutrition [1]. -
Isolation and Identification of Shoot-Tip Associated Endophytic Bacteria from Banana Cv
American Journal of Plant Sciences, 2015, 6, 943-954 Published Online April 2015 in SciRes. http://www.scirp.org/journal/ajps http://dx.doi.org/10.4236/ajps.2015.67101 Isolation and Identification of Shoot-Tip Associated Endophytic Bacteria from Banana cv. Grand Naine and Testing for Antagonistic Activity against Fusarium oxysporum f. sp. cubense Aparna Chandra Sekhar, Pious Thomas* Endophytic and Molecular Microbiology Laboratory, Division of Biotechnology, ICAR-Indian Institute of Horticultural Research (IIHR), Bangalore, India Email: *[email protected], *[email protected] Received 4 March 2015; accepted 10 April 2015; published 14 April 2015 Copyright © 2015 by authors and Scientific Research Publishing Inc. This work is licensed under the Creative Commons Attribution International License (CC BY). http://creativecommons.org/licenses/by/4.0/ Abstract Endophytic bacteria colonizing the shoot-tips of banana cv. Grand Naine were isolated and tested for the antagonistic activity against the Panama wilt pathogen Fusarium oxysporum f. sp. cubense (Foc). Pre-isolation, the suckers were given extensive disinfection treatments and the homogenate from the excised shoot-tip portion was plated on nutrient agar (NA) and trypticase soy agar (TSA). This yielded altogether 47 isolates: 26 on NA and 21 on TSA, respectively, from the 10 suckers col- lected during August to February. The number of bacterial isolates obtained per sucker varied from one to 15 based on colony characteristics registering up to 10 distinct species per shoot-tip based on 16S rRNA sequence analysis. The 47 isolates belonged to 19 genera and 25 species under the phylogenetic classes of Actinobacteria, α- and γ-Proteobacteria and Firmicutes. -
Wild Apple-Associated Fungi and Bacteria Compete to Colonize the Larval Gut of an Invasive Wood-Borer Agrilus Mali in Tianshan Forests
Wild apple-associated fungi and bacteria compete to colonize the larval gut of an invasive wood-borer Agrilus mali in Tianshan forests Tohir Bozorov ( [email protected] ) Xinjiang Institute of Ecology and Geography https://orcid.org/0000-0002-8925-6533 Zokir Toshmatov Plant Genetics Research Unit: Genetique Quantitative et Evolution Le Moulon Gulnaz Kahar Xinjiang Institute of Ecology and Geography Daoyuan Zhang Xinjiang Institute of Ecology and Geography Hua Shao Xinjiang Institute of Ecology and Geography Yusufjon Gafforov Institute of Botany, Academy of Sciences of Uzbekistan Research Keywords: Agrilus mali, larval gut microbiota, Pseudomonas synxantha, invasive insect, wild apple, 16S rRNA and ITS sequencing Posted Date: March 16th, 2021 DOI: https://doi.org/10.21203/rs.3.rs-287915/v1 License: This work is licensed under a Creative Commons Attribution 4.0 International License. Read Full License Page 1/17 Abstract Background: The gut microora of insects plays important roles throughout their lives. Different foods and geographic locations change gut bacterial communities. The invasive wood-borer Agrilus mali causes extensive mortality of wild apple, Malus sieversii, which is considered a progenitor of all cultivated apples, in Tianshan forests. Recent analysis showed that the gut microbiota of larvae collected from Tianshan forests showed rich bacterial diversity but the absence of fungal species. In this study, we explored the antagonistic ability of gut bacteria to address this absence of fungi in the larval gut. Results: The results demonstrated that gut bacteria were able to selectively inhibit wild apple tree-associated fungi. However, Pseudomonas synxantha showed strong antagonistic ability, producing antifungal compounds. Using different analytical methods, such as column chromatography, mass spectrometry, HPLC and NMR, an antifungal compound, phenazine-1-carboxylic acid (PCA), was identied. -
Journal of Environmental Biology Analysis of Microbial Communities
Journal Home page : www.jeb.co.in « E-mail : [email protected] Original Research TM Journal of Environmental Biology JEBTM p-ISSN: 0254-8704 DOI : http://doi.org/10.22438/jeb/39/2/MRN-450 e-ISSN: 2394-0379 CODEN: JEBIDP Analysis of microbial communities in local cultivars of astringent persimmon (Diospyros kaki ) fruits grown in Gyeongnam Province of Korea White Smoke Just write. PDlagiarism etector Abstract Authors Info J.E. Choi1,2 , S.H. Choi 3, J.S. Lee 4, K.C. Aim : The objective of the present study was to characterize the microbial communities within the stalks of Lee 4556, S.M. Kang , J.I. Kim , M.S. Choi , astringent persimmons fruits grown locally in Korea and two commercial herbal products (kaki calyx- H.G. Kim 671,W.T. Seo , K.Y.Lee , B.C.Moon 1Korean & kaki calyx-Chinese, using pyrosequencing based on 16S and 18S genes. and Y. M. Kang1,2 * 12K-herb Research Center, UST, Korean Methodology : 'Gojongsi' sample was Medicine Life Science, collected from Sancheong province, Korea Institute of Oriental Medicine 'Danseongsi' from Sancheong province (KIOM), 1672 Yuseong-daero, Yuseong-gu, Daejeon-34054, Republic of Korea and 'Bansi' from Miryang province during different seasons (October to 3AtoGen Co., Ltd. 11-8, Techno 1-ro, Yuseong-gu, Daejeon-34015, Republic December) from Korea Forest of Korea Environment Research Institute at 4Korea Research Institute of Bioscience Gyeongsangnam-do. Thirteen samples and Biotechnology (KRIBB), 181 Ipsin-gil, were divided into four groups A, B, C and Jeongeup-si, Jeollabuk-do-56212, Republic D. Group A consisted of three kinds of of Korea undried stalks collected in October. -
Processed Foods
18 Processed Food - Media for Industrial Microbiology PROCESSED FOODS Dehydrated culture media and detected bacteria Listeria monocytogenes Staphylococcus aureus Aerobes mesophiles Salmonella/Shigella Y Escherichia coli east and molds Enterobacteria Coliform Y ersinia Cat. Suppl. No. Cat. No. Uses Ref. Method s Baird Parker Agar Base 1319 5129 Selective Isolation ISO 6888-1 Baird Parker Agar Base (RPF) 1319 6024 Selective Isolation ISO 6888-2 BCP Agar 1051 Isolation BCP Glucose Agar 1320 Differentiation/Enumeration ISO 21528-2 Bismuth Sulfite Agar (Wilson Blair) 1011 Selective Isolation USP Brilliant Green Agar 1078 Selective Isolation Eur. Pharma USP Brilliant Green Bile Broth 2% 1228 Detection ISO 4831 ISO 4832 Brilliant Green Selenite Broth 1221 Selective Enrichment Brilliant Green Tetrathionate Bile Broth 1253 Selective Enrichment Eur. Pharma Carbohydrates Utilization Broth 1342 Confirmation ISO 11290-2 Chapman Stone Agar 1017 Selective Isolation / Differentiation DCLS Agar 1045 Selective Isolation Desoxycholate Citrate Agar 1067 Selective Isolation Eur. Pharma Desoxycholate Lactose Agar 1025 Isolation / Enumeration Dextrose Agar 1021 Total Count E. Coli Coliforms Chromogenic Medium 1340 Selective Detection EE Broth 1362 Enumeration ISO 21528-1 Endo Agar Base 1118 Confirmation / Differentiation Fraser Broth Base 1182 6001 Enrichment Medium ISO 11290-1 Giolitti - Cantoni Broth 1287 5208 Detection ISO 6888 / 5944 Hektoen Enteric Agar 1030 Isolation / Differentiation Irgasan Ticarcillin & Potassium Chlorate 1361 6051 Enrichment Medium -
Harmonized Pharmacopeia Dehydrated Media
Harmonised Pharmacopoeia Compliant to Dehydrated Culture Media EP 10th Edition 1. Sterility Testing Sterility testing is required when developing and manufacturing products for pharmaceutical applications as part of a sterilisation validation process as well as routine testing before release. Manufacturers must provide adequate and reliable sterility test data to ensure their product meets strict safety guidelines. Neogen offers the below media for sterility testing, which have been developed in accordance with the European Pharmacopoeia (EP) compliance guidelines: Fluid Thioglycollate Medium NCM0108 This medium has been designed for the detection of aerobic and anaerobic organisms including Clostridia spp., Pseudomonas spp. and Staphylococci. The medium has a nutritionally rich base to support the growth of a wide range of organisms as well as low oxygen reduction potential to prevent any species that may have a negative effect on the recovery and growth of contaminants. NCM0108 Tryptic Soy Broth (Soybean-Casein Digest Broth) NCM0004 This is a highly nutritious medium for the cultivation of a wide range of microorganisms including Aspergillus spp., Bacillus spp. and Candida spp. This versatile medium promotes growth of both fungi and aerobic bacteria, and can also be used as a pre-enrichment broth for non-sterile products. NCM0004 2. Examination of Non-Sterile Products Not all products which are released to market are required to be sterile. Instead, to guarantee that the product meets safety and quality standards, manufacturers are required to evaluate the microbial content of each product and ensure no organisms of concern are present. Neogen’s media range for the examination of non-sterile products has been developed for detection and enumeration of each organism specified within the HP including: Bile-Tolerant Gram-Negative Bacteria Enterobacteriaceae Enrichment (EE) Broth Mossel NCM0057 This is a selective broth for the enrichment of Enterobacteriaceae. -
Assessing the Cultivability of Bacteria and Fungi from Arable Crop Residues Using Metabarcoding Data As a Reference
diversity Article Assessing the Cultivability of Bacteria and Fungi from Arable Crop Residues Using Metabarcoding Data as a Reference Valérie Laval 1,†, Lydie Kerdraon 1,†, Matthieu Barret 2, Anne-Lise Liabot 2, Coralie Marais 2, Benjamin Boudier 1, Marie-Hélène Balesdent 1, Marion Fischer-Le Saux 2 and Frédéric Suffert 1,* 1 Université Paris-Saclay, INRAE, AgroParisTech, UMR BIOGER, 78850 Thiverval-Grignon, France; [email protected] (V.L.); [email protected] (L.K.); [email protected] (B.B.); [email protected] (M.-H.B.) 2 INRAE, Agrocampus Ouest, Université d’Angers, UMR IRHS, 49071 Beaucouzé, France; [email protected] (M.B.); [email protected] (A.-L.L.); [email protected] (C.M.); [email protected] (M.F.-L.S.) * Correspondence: [email protected] † These authors contributed equally to this work. Abstract: This study combined culture-dependent (strain isolation plus molecular identification) and culture-independent (metabarcoding) approaches to characterize the diversity of microbiota on wheat and oilseed rape residues. The goal was to develop a methodology to culture microorganisms with the aim of being able to establish synthetic crop residue microbial communities for further study, i.e., testing potential interactions within these communities and characterizing groups of beneficial taxa that could Citation: Laval, V.; Kerdraon, L.; be used as biological control agents against plant pathogens. We generated community-based culture Barret, M.; Liabot, A.-L.; Marais, C.; collections. We adapted the isolation strategy to the potential differences in the spatial and temporal Boudier, B.; Balesdent, M.-H.; distribution of diversity between bacteria and fungi. -
United States Patent 0 Fatented Apr
1 3,244,592 United States Patent 0 Fatented Apr. 5, 1966 1 2 Starch agar.-—Elevated growth. Vegetative mycelium, 3,244,592 ASCOMYCIN AND PRQCESS FQR 1T§ cream colored. Aerial mycelium, mouse-gray, powdery. PRGDUCTEGN The surface of the growth, mosaic of gray and black. Tadashi Arai, 1-71 Nogata-machi, Nalranaku, No soluble pigment. Tokyo-to, Japan Yeast extract nutrient agar.-—Growth, yellowish-brown, N0 Drawing. Filed May 1, 1963, Ser. No. 277,111 wrinkled, with cracks on its surface. Aerial mycelium, Claims priority, application Japan, .l‘une 9, 1962, poor, white, grows on the surroundings of colony. No 37/215,253 soluble pigment.‘ 4 Claims. (Cl. 167-65) Potato plug.—Growth, ?at, spread. Aerial mycelium, This invention relates to a new and useful substance white, cottony. The color of the plug is not changed. called ascomycin, and to its production. More particu Carrot plug.—Growth, cream-colored, spotted, with larly it relates to. processes for its production by fermenta~ subsided center. Aerial mycelium, abundant, white, cot tion and methods for its recovery and puri?cation. The tony. No color change of the plug. invention embraces this compound in dilute solutions, Litmus milk.-Thin surface growth, pale-cream colored. as crude concentrates and as puri?ed solids. Ascomycin Aerial mycelium, white. No soluble pigment. Coagu is an effective inhibitor of. ?lamentous fungi, e.g. Penicil lated from seventh day, digested gradually. lium chlysogenum; at very low concentrations, e.g. about Gelatin.—No pigment formation. strong lysis. one part per million in a nutrient agar, and does not Blood' again-Colony, grayish-brown, round shaped, inhibit various Gram-positive and Gram-negative bac with subsided center.