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Genomic Insights of Body Plan Transitions from Bilateral to Pentameral Symmetry in Echinoderms
ARTICLE https://doi.org/10.1038/s42003-020-1091-1 OPEN Genomic insights of body plan transitions from bilateral to pentameral symmetry in Echinoderms Yongxin Li1, Akihito Omori 2, Rachel L. Flores3, Sheri Satterfield3, Christine Nguyen3, Tatsuya Ota 4, Toko Tsurugaya5, Tetsuro Ikuta6,7, Kazuho Ikeo4, Mani Kikuchi8, Jason C. K. Leong9, Adrian Reich 10, Meng Hao1, Wenting Wan1, Yang Dong 11, Yaondong Ren1, Si Zhang12, Tao Zeng 12, Masahiro Uesaka13, 1234567890():,; Yui Uchida9,14, Xueyan Li 1, Tomoko F. Shibata9, Takahiro Bino15, Kota Ogawa16, Shuji Shigenobu 15, Mariko Kondo 9, Fayou Wang12, Luonan Chen 12,17, Gary Wessel10, Hidetoshi Saiga7,9,18, ✉ ✉ R. Andrew Cameron 19, Brian Livingston3, Cynthia Bradham20, Wen Wang 1,21,22 & Naoki Irie 9,14,22 Echinoderms are an exceptional group of bilaterians that develop pentameral adult symmetry from a bilaterally symmetric larva. However, the genetic basis in evolution and development of this unique transformation remains to be clarified. Here we report newly sequenced genomes, developmental transcriptomes, and proteomes of diverse echinoderms including the green sea urchin (L. variegatus), a sea cucumber (A. japonicus), and with particular emphasis on a sister group of the earliest-diverged echinoderms, the feather star (A. japo- nica). We learned that the last common ancestor of echinoderms retained a well-organized Hox cluster reminiscent of the hemichordate, and had gene sets involved in endoskeleton development. Further, unlike in other animal groups, the most conserved developmental stages were not at the body plan establishing phase, and genes normally involved in bila- terality appear to function in pentameric axis development. These results enhance our understanding of the divergence of protostomes and deuterostomes almost 500 Mya. -
Echinodermata: Crinoidea: Comatulida: Comasteridae) from the Ryukyu Islands, Japan*
Zootaxa 3367: 252–268 (2012) ISSN 1175-5326 (print edition) www.mapress.com/zootaxa/ Article ZOOTAXA Copyright © 2012 · Magnolia Press ISSN 1175-5334 (online edition) Comanthus kumi, a new shallow-water comatulid (Echinodermata: Crinoidea: Comatulida: Comasteridae) from the Ryukyu Islands, Japan* YOSHIHISA FUJITA1,2,4 & MASAMI OBUCHI3 1University Education Center, University of the Ryukyus, 1 Senbaru, Nishihara-cho, Okinawa 903-0213, Japan. E-mail: [email protected] 2Marine Learning Center, 2-95-101 Miyagi, Chatan-cho, Okinawa 904-0113, Japan. 3Biological Institute on Kuroshio 560 Nishidomari, Otuski-cho, Kochi, 788-0333 Japan. E-mail: [email protected] 4Corresponding author * In: Naruse, T., Chan, T.-Y., Tan, H.H., Ahyong, S.T. & Reimer, J.D. (2012) Scientific Results of the Marine Biodiversity Expedition — KUMEJIMA 2009. Zootaxa, 3367, 1–280. Abstract A new species of the genus Comanthus A.H. Clark, 1908, is described on the basis of specimens collected from Kume Island and Okinawa Island, the Ryukyu Islands, Japan. Comanthus kumi n. sp. is distinguished from all ten congeners by having extremely elongate arms exceeding 300 mm in length and the colouration in life. The new species concealed its whole body in a crevice or small hole on coral reefs during the day and protruded only several elongate arms on the reef surface at night. This habit suggests that the new species is nocturnal. Key words: Crinoidea, Comatulida, Comasteridae, new species, Okinawa Introduction The species of the comatulid genus Comanthus A.H. Clark, 1908 are well known in shallow-water coral reefs (Kogo 1998; Rowe et al. 1986). The genus was established by A.H. -
In Situ Observations Increase the Diversity Records of Rocky-Reef Inhabiting Echinoderms Along the South West Coast of India
Indian Journal of Geo Marine Sciences Vol. 48 (10), October 2019, pp. 1528-1533 In situ observations increase the diversity records of Rocky-reef inhabiting Echinoderms along the South West Coast of India Surendar Chandrasekar1*, Singarayan Lazarus2, Rethnaraj Chandran3, Jayasingh Chellama Nisha3, Gigi Chandra Rajan4 and Chowdula Satyanarayana1 1Marine Biology Regional Centre, Zoological Survey of India, Chennai 600 028, Tamil Nadu, India 2Institute for Environmental Research and Social Education, No.150, Nesamony Nagar, Nagercoil 629001, Tamil Nadu, India 3GoK-Coral Transplantation/Restoration Project, Zoological Survey of India - Field Station, Jamnagar 361 001, Gujrat, India 4Department of Zoology, All Saints College, Trivandrum 695 008, Kerala, India *[Email: [email protected]] Received 19 January 2018; revised 23 April 2018 Diversity of Echinoderms was studied in situ in rocky reefs areas of the south west coast of India from Goa (Lat. N 15°21.071’; Long. E 073°47.069’) to Kanyakumari (Lat. N 08°06.570’; Long. E 077°18.120’) via Karnataka and Kerala. The underwater visual census to assess the biodiversity was carried out by SCUBA diving. This study reveals 11 new records to Goa, 7 to Karnataka, 5 to Kerala and 7 to the west coast of Tamil Nadu. A total of 15 species representing 12 genera, 10 families, 8 orders and 5 Classes were recorded namely Holothuria atra, H. difficilis, H. leucospilota, Actinopyga mauritiana, Linckia laevigata, Temnopleurus toreumaticus, Salmacis bicolor, Echinothrix diadema, Stomopneustes variolaris, Macrophiothrix nereidina, Tropiometra carinata, Linckia multifora, Fromia milleporella and Ophiocoma scolopendrina. Among these, the last three are new records to the west coast of India. -
Echinodermata) and Their Permian-Triassic Origin
Molecular Phylogenetics and Evolution 66 (2013) 161-181 Contents lists available at SciVerse ScienceDirect FHYLÖGENETICS a. EVOLUTION Molecular Phylogenetics and Evolution ELSEVIER journal homepage:www.elsevier.com/locate/ympev Fixed, free, and fixed: The fickle phylogeny of extant Crinoidea (Echinodermata) and their Permian-Triassic origin Greg W. Rouse3*, Lars S. Jermiinb,c, Nerida G. Wilson d, Igor Eeckhaut0, Deborah Lanterbecq0, Tatsuo 0 jif, Craig M. Youngg, Teena Browning11, Paula Cisternas1, Lauren E. Helgen-1, Michelle Stuckeyb, Charles G. Messing k aScripps Institution of Oceanography, UCSD, 9500 Gilman Drive, La Jolla, CA 92093, USA b CSIRO Ecosystem Sciences, GPO Box 1700, Canberra, ACT 2601, Australia c School of Biological Sciences, The University of Sydney, NSW 2006, Australia dThe Australian Museum, 6 College Street, Sydney, NSW 2010, Australia e Laboratoire de Biologie des Organismes Marins et Biomimétisme, University of Mons, 6 Avenue du champ de Mars, Life Sciences Building, 7000 Mons, Belgium fNagoya University Museum, Nagoya University, Nagoya 464-8601, Japan s Oregon Institute of Marine Biology, PO Box 5389, Charleston, OR 97420, USA h Department of Climate Change, PO Box 854, Canberra, ACT 2601, Australia 1Schools of Biological and Medical Sciences, FI 3, The University of Sydney, NSW 2006, Sydney, Australia * Department of Entomology, NHB E513, MRC105, Smithsonian Institution, NMNH, P.O. Box 37012, Washington, DC 20013-7012, USA k Oceanographic Center, Nova Southeastern University, 8000 North Ocean Drive, Dania Beach, FL 33004, USA ARTICLE INFO ABSTRACT Añicle history: Although the status of Crinoidea (sea lilies and featherstars) as sister group to all other living echino- Received 6 April 2012 derms is well-established, relationships among crinoids, particularly extant forms, are debated. -
The Shallow-Water Crinoid Fauna of Kwajalein Atoll, Marshall Islands: Ecological Observations, Interatoll Comparisons, and Zoogeographic Affinities!
Pacific Science (1985), vol. 39, no. 4 © 1987 by the Univers ity of Hawaii Press. All rights reserved The Shallow-Water Crinoid Fauna of Kwajalein Atoll, Marshall Islands: Ecological Observations, Interatoll Comparisons, and Zoogeographic Affinities! D. L. ZMARZLy 2 ABSTRACT: Twelve species ofcomatulid crinoids in three families were found to inhabit reefs at Kwajalein Atoll during surveys conducted both day and night by divers using scuba gear. Eleven of the species represent new records for the atoll, and five are new for the Marshall Islands. A systematic resume of each species is presented, including observations on die! activity patterns, degree of exposure when active, and current requirements deduced from local distri butions. More than half of the species were strictly nocturnal. Densities of nocturnal populations were much higher than those typically observed during the day . Occurrence and distribution ofcrinoids about the atoll appeared to be influenced by prevailing currents. Some species, of predominantly cryptic and semicryptic habit by day, occurred at sites both with and without strong currents. While these species were able to survive in habitats where currents prevailed, they appeared not to require strong current flow. In contrast, the remaining species, predominantly large, fully exposed comasterids, were true rheophiles; these were found on seaward reefs and only on lagoon reefs in close proximity to tidal passes. Comparison of crinoid records between atolls in the Marshall Islands shows Kwajalein to have the highest diversity, although current disparities between atolls in the number of species recorded undoubtedly reflect to some extent differences in sampling effort and methods. Based on pooled records, a total of 14 shallow-water crinoid species is known for the Marshall Islands, compared with 21 for the Palau Archipelago and 55 for the Philippines. -
The Shallow-Water Macro Echinoderm Fauna of Nha Trang Bay (Vietnam): Status at the Onset of Protection of Habitats
The Shallow-water Macro Echinoderm Fauna of Nha Trang Bay (Vietnam): Status at the Onset of Protection of Habitats Master Thesis in Marine Biology for the degree Candidatus scientiarum Øyvind Fjukmoen Institute of Biology University of Bergen Spring 2006 ABSTRACT Hon Mun Marine Protected Area, in Nha Trang Bay (South Central Vietnam) was established in 2002. In the first period after protection had been initiated, a baseline survey on the shallow-water macro echinoderm fauna was conducted. Reefs in the bay were surveyed by transects and free-swimming observations, over an area of about 6450 m2. The main area focused on was the core zone of the marine reserve, where fishing and harvesting is prohibited. Abundances, body sizes, microhabitat preferences and spatial patterns in distribution for the different species were analysed. A total of 32 different macro echinoderm taxa was recorded (7 crinoids, 9 asteroids, 7 echinoids and 8 holothurians). Reefs surveyed were dominated by the locally very abundant and widely distributed sea urchin Diadema setosum (Leske), which comprised 74% of all specimens counted. Most species were low in numbers, and showed high degree of small- scale spatial variation. Commercially valuable species of sea cucumbers and sea urchins were nearly absent from the reefs. Species inventories of shallow-water asteroids and echinoids in the South China Sea were analysed. The results indicate that the waters of Nha Trang have echinoid and asteroid fauna quite similar to that of the Spratly archipelago. Comparable pristine areas can thus be expected to be found around the offshore islands in the open parts of the South China Sea. -
An Annotated Checklist of the Marine Macroinvertebrates of Alaska David T
NOAA Professional Paper NMFS 19 An annotated checklist of the marine macroinvertebrates of Alaska David T. Drumm • Katherine P. Maslenikov Robert Van Syoc • James W. Orr • Robert R. Lauth Duane E. Stevenson • Theodore W. Pietsch November 2016 U.S. Department of Commerce NOAA Professional Penny Pritzker Secretary of Commerce National Oceanic Papers NMFS and Atmospheric Administration Kathryn D. Sullivan Scientific Editor* Administrator Richard Langton National Marine National Marine Fisheries Service Fisheries Service Northeast Fisheries Science Center Maine Field Station Eileen Sobeck 17 Godfrey Drive, Suite 1 Assistant Administrator Orono, Maine 04473 for Fisheries Associate Editor Kathryn Dennis National Marine Fisheries Service Office of Science and Technology Economics and Social Analysis Division 1845 Wasp Blvd., Bldg. 178 Honolulu, Hawaii 96818 Managing Editor Shelley Arenas National Marine Fisheries Service Scientific Publications Office 7600 Sand Point Way NE Seattle, Washington 98115 Editorial Committee Ann C. Matarese National Marine Fisheries Service James W. Orr National Marine Fisheries Service The NOAA Professional Paper NMFS (ISSN 1931-4590) series is pub- lished by the Scientific Publications Of- *Bruce Mundy (PIFSC) was Scientific Editor during the fice, National Marine Fisheries Service, scientific editing and preparation of this report. NOAA, 7600 Sand Point Way NE, Seattle, WA 98115. The Secretary of Commerce has The NOAA Professional Paper NMFS series carries peer-reviewed, lengthy original determined that the publication of research reports, taxonomic keys, species synopses, flora and fauna studies, and data- this series is necessary in the transac- intensive reports on investigations in fishery science, engineering, and economics. tion of the public business required by law of this Department. -
Ophiuroidea: Amphilepidida: Amphiuridae), from Geoje Island, Korea
-페이지 연속.(가능한한 짝수되게). -표 선: 맨위,맨아래 1pt / 중간 0.3pt -표 내부여백 : 선 있는 곳 2, 선 없는 곳 0.7 -et al. Journal of Species Research 9(3):273-279, 2020 A newly recorded brittle star, Amphiura (Amphiura) digitula (H.L. Clark, 1911) (Ophiuroidea: Amphilepidida: Amphiuridae), from Geoje Island, Korea Taekjun Lee1 and Sook Shin1,2 1Marine Biological Resource Institute, Sahmyook University, Seoul 01795, Republic of Korea 2Department of Animal Biotechnology and Resource, Sahmyook University, Seoul 01795, Republic of Korea *Correspondent: [email protected] We describe a newly recorded brittle star to South Korea, Amphiura (Amphiura) digitula (H.L. Clark, 1911), that was collected from Geoje Island, at a depth of 47 m. The species is characterized by a small disk, covered by numerous fine scales, small radial shields that are wider than long, a small stumpy hook at the distal end of the radial shield, two tooth papilla, two adoral shield spines, 2nd adoral shield spine longer than other, tapered dramatically toward dull tip, five arms with four proximal arm spines, and two tentacle scales. We also obtained a 657 bp sequence from COI gene and the amplified sequence matched the general DNA barcoding region. The NJ and ML phylogenetic analyses revealed A. (A.) digitula as monophyletic in the Amphiura clade. This species is clearly distinguished from other Amphiura species by morphological characteristics and the mitochondrial COI sequence, and thus represents the sixth Amphiura species reported to occur in Korea. Keywords: Echinodermata, mitochondrial COI, morphology, ophiuroid, taxonomy Ⓒ 2020 National Institute of Biological Resources DOI:10.12651/JSR.2020.9.3.273 INTRODUCTION al., 2016; Boissin et al., 2017; Knott et al., 2018; Paw- son, 2018). -
Morphological Description and Molecular Analysis of Newly Recorded Anneissia Pinguis(Crinoidea: Comatulida: Comatulidae) from Ko
Journal of Species Research 9(4):467-472, 2020 Morphological description and molecular analysis of newly recorded Anneissia pinguis (Crinoidea: Comatulida: Comatulidae) from Korea Philjae Kim1,2 and Sook Shin1,3,* 1Marine Biological Resource Institute, Sahmyook University, Seoul 01795, Republic of Korea 2Division of Ecological Conservation, Bureau of Ecological Research, National Institute of Ecology, Seocheon-gun, Chungnam 33657, Republic of Korea 3Department of Animal Biotechnology & Resource, Sahmyook University, Seoul 01795, Republic of Korea *Correspondent: [email protected] The crinoid specimens of the genus Anneissia were collected from Nokdong, Korea Strait, and Moseulpo, Jeju Island. The specimens were identified as Anneissia pinguis (A.H. Clark, 1909), which belongs to the family Comatulidae of the order Comatulida. Anneissia pinguis was first described by A.H. Clark in 1909 around southern Japan. This species can be distinguished from other Anneissia species by a longish and stout cirrus, much fewer arms, and short distal cirrus segments. The morphological features of Korean specimens are as follows: large disk (20-35 mm), 28-36 segments and 32-43 mm length cirrus, division series in all 4 (3+4), very stout and strong distal pinnule with 18-19 comb and 40 arms. In Korea fauna, only three species of genus Anneissia were recorded: A. intermedia, A. japonica, and A. solaster. In this study, we provide the morphological description and phylogenetic analysis based on cytochrome c oxidase subunit I. Keywords: Anneissia pinguis, crinoid, cytochrome c oxidase subunit I, morphological feature, phylogeny Ⓒ 2020 National Institute of Biological Resources DOI:10.12651/JSR.2020.9.4.467 INTRODUCTION al cytochrome c oxidase subunit I (COI) is usually used in DNA barcoding studies of echinoderms (Ward et al., The family Comatulidae Fleming 1828 comprises 105 2008; Hoareau and Boissin, 2010). -
Taxonomic Study on the Feather Stars (Crinoidea: Echinodermata) from Egyptian Red Sea Coasts and Suez Canal, Egypt
Open Journal of Marine Science, 2012, 2, 51-57 http://dx.doi.org/10.4236/ojms.2012.22007 Published Online April 2012 (http://www.SciRP.org/journal/ojms) Taxonomic Study on the Feather Stars (Crinoidea: Echinodermata) from Egyptian Red Sea Coasts and Suez Canal, Egypt Ahmed M. Hellal Marine Biology and Fish Science Section, Zoology Department, Faculty of Science, Al-Azhar University, Cairo, Egypt Email: [email protected] Received November 27, 2011; revised January 16, 2012; accepted January 25, 2012 ABSTRACT A taxonomic study on the crinoids (feather stars) collected from 34 sites from the Red Sea coasts and islands as well as the Suez Canal was done during the period from 1992 to 2003. A total of 15 species are now known from the Red Sea belonging to eleven genera under six families. Among them four species are endemic to the Red Sea and the two spe- cies, Decametra chadwicki and Lamprometra klunzingeri, are recorded from the Suez Canal for the first time. Also, the two species, Oligometra serripinna and Dorometra aegyptica, are new record from Gulf of Suez, and Decametra mollis from Gulf of Aqaba and Northern Red Sea. This study represents the first proper documentation of crinoid species in the study area. Summaries are provided of the specific habitats and geographical distribution. Keywords: Crinoidea; Red Sea; Suez Canal; Taxonomy; Habitats; Geographical Distribution 1. Introduction 2. Material and Methods Feather-stars constitute group of echinoderms belonging 2.1. Field Observation, Collection and to class Crinoidea and order Comatulida, having five to Preservation hundreds of arms surrounding their cup-like bodies [1,2]. -
Turbo-Taxonomy: 21 New Species of Myzostomida (Annelida)
Zootaxa 3873 (4): 301–344 ISSN 1175-5326 (print edition) www.mapress.com/zootaxa/ Article ZOOTAXA Copyright © 2014 Magnolia Press ISSN 1175-5334 (online edition) http://dx.doi.org/10.11646/zootaxa.3873.4.1 http://zoobank.org/urn:lsid:zoobank.org:pub:84F8465A-595F-4C16-841E-1A345DF67AC8 Turbo-taxonomy: 21 new species of Myzostomida (Annelida) MINDI M. SUMMERS1,3, IIN INAYAT AL-HAKIM2 & GREG W. ROUSE1,3 1Scripps Institution of Oceanography, UCSD, 9500 Gilman Drive, La Jolla, CA 92093, USA 2Research Center for Oceanography, Indonesian Institute of Sciences (RCO-LIPI), Jl. Pasir Putih I, Ancol Timur, Jakarta 14430, Indonesia 3Correspondence. E-mail: [email protected]; [email protected] Abstract An efficient protocol to identify and describe species of Myzostomida is outlined and demonstrated. This taxonomic ap- proach relies on careful identification (facilitated by an included comprehensive table of available names with relevant geographical and host information) and concise descriptions combined with DNA sequencing, live photography, and ac- curate host identification. Twenty-one new species are described following these guidelines: Asteromyzostomum grygieri n. sp., Endomyzostoma scotia n. sp., Endomyzostoma neridae n. sp., Mesomyzostoma lanterbecqae n. sp., Hypomyzos- toma jasoni n. sp., Hypomyzostoma jonathoni n. sp., Myzostoma debiae n. sp., Myzostoma eeckhauti n. sp., Myzostoma hollandi n. sp., Myzostoma indocuniculus n. sp., Myzostoma josefinae n. sp., Myzostoma kymae n. sp., Myzostoma lau- renae n. sp., Myzostoma miki n. sp., Myzostoma pipkini n. sp., Myzostoma susanae n. sp., Myzostoma tertiusi n. sp., Pro- tomyzostomum lingua n. sp., Protomyzostomum roseus n. sp., Pulvinomyzostomum inaki n. sp., and Pulvinomyzostomum messingi n. sp. Key words: systematics, polychaete, marine, symbiosis, crinoid, asteroid, ophiuroid, parasite, taxonomic impediment Background Estimations of Earth’s biodiversity vary by orders of magnitude (e.g. -
Echinodermata of Lakshadweep, Arabian Sea with the Description of a New Genus and a Species
Rec. zool. Surv. India: Vol 119(4)/ 348-372, 2019 ISSN (Online) : 2581-8686 DOI: 10.26515/rzsi/v119/i4/2019/144963 ISSN (Print) : 0375-1511 Echinodermata of Lakshadweep, Arabian Sea with the description of a new genus and a species D. R. K. Sastry1*, N. Marimuthu2* and Rajkumar Rajan3 1Erstwhile Scientist, Zoological Survey of India (Ministry of Environment, Forest and Climate Change), FPS Building, Indian Museum Complex, Kolkata – 700016 and S-2 Saitejaswini Enclave, 22-1-7 Veerabhadrapuram, Rajahmundry – 533105, India; [email protected] 2Zoological Survey of India (Ministry of Environment, Forest and Climate Change), FPS Building, Indian Museum Complex, Kolkata – 700016, India; [email protected] 3Marine Biology Regional Centre, Zoological Survey of India (Ministry of Environment, Forest and Climate Change), 130, Santhome High Road, Chennai – 600028, India Zoobank: http://zoobank.org/urn:lsid:zoobank.org:act:85CF1D23-335E-4B3FB27B-2911BCEBE07E http://zoobank.org/urn:lsid:zoobank.org:act:B87403E6-D6B8-4ED7-B90A-164911587AB7 Abstract During the recent dives around reef slopes of some islands in the Lakshadweep, a total of 52 species of echinoderms, including four unidentified holothurians, were encountered. These included 12 species each of Crinoidea, Asteroidea, Ophiuroidea and eightspecies each of Echinoidea and Holothuroidea. Of these 11 species of Crinoidea [Capillaster multiradiatus (Linnaeus), Comaster multifidus (Müller), Phanogenia distincta (Carpenter), Phanogenia gracilis (Hartlaub), Phanogenia multibrachiata (Carpenter), Himerometra robustipinna (Carpenter), Lamprometra palmata (Müller), Stephanometra indica (Smith), Stephanometra tenuipinna (Hartlaub), Cenometra bella (Hartlaub) and Tropiometra carinata (Lamarck)], four species of Asteroidea [Fromia pacifica H.L. Clark, F. nodosa A.M. Clark, Choriaster granulatus Lütken and Echinaster luzonicus (Gray)] and four species of Ophiuroidea [Gymnolophus obscura (Ljungman), Ophiothrix (Ophiothrix) marginata Koehler, Ophiomastix elegans Peters and Indophioderma ganapatii gen et.