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The Proceedings of the Conference on the Challenges of Contemporary Cell Biology Molecular Genetics, System Biology, Bioinformatics

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The Proceedings of the Conference on the Challenges of Contemporary Cell Biology Molecular Genetics, System Biology, Bioinformatics University of Lodz The Proceedings of the Conference on The Challenges of Contemporary Cell Biology Molecular Genetics, System Biology, Bioinformatics April 20 – 21, 2009 The Conference to Honor Professor Maria J. Olszewska on Her Jubilee Łódź University Press, 2009 Conference on The Challenges of Contemporary Cell Biology – April 20-21, 2009 Sponsors of the Conference 2 Conference on The Challenges of Contemporary Cell Biology – April 20-21, 2009 Patronage: Rector of the University of Lodz – Professor Włodzimierz Nykiel, Ph.D. Conference supported by Polish Ministry of Science and Higher Education Conference Organizers: The Committee on Cell Biology of Polish Academy of Sciences Institute of Physiology, Cytology, and Cytogenetics, University of Lodz The Lodz Branch of the Polish Academy of Sciences Organizing Committee: Chairman: Andrzej K. Kononowicz – University of Lodz Vice-Chairman: Elżbieta Wyroba – The Committee on Cell Biology of Polish Academy of Sciences Members: Maria Kwiatkowska – University of Lodz Jerzy Kawiak – Editor of Advances in Cell Biology (Postępy Biologii Komórki) Barbara Gabara – University of Lodz Mirosław Godlewski – University of Lodz Jacek Jurczakowski – The Lodz Branch of the Polish Academy of Sciences Kazimierz Marciniak – University of Lodz Janusz Maszewski – University of Lodz Maria Skłodowska – University of Lodz Scientific Committee: Maria Kwiatkowska – University of Lodz Jerzy Kawiak – Editor of Advances in Cell Biology (Postępy Biologii Komórki) Andrzej K. Kononowicz – University of Lodz Janusz Maszewski – University of Lodz Conference Office: Ewa Mikołajczyk-Zając – University of Lodz Violetta Macioszek – University of Lodz Katarzyna Hnatuszko-Konka – University of Lodz (Book cover and Conference website design) Tomasz Kowalczyk – University of Lodz Department of Genetics and Plant Molecular Biology and Biotechnology Faculty of Biology and Environmental Protection University of Lodz S. Banacha 12/16, 90-237 Lodz, Tel, Fax: 042 635 44 23 Conference e-mail: [email protected] Editors of The Proceedings: Andrzej K. Kononowicz, Ewa Mikołajczyk Zając, Janusz Maszewski 3 Conference on The Challenges of Contemporary Cell Biology – April 20-21, 2009 CONTENTS PROFESSOR MARIA J. OLSZEWSKA – HER SCIENTIFIC AND ACADEMIC LIFE AND ACHIEVEMENTS (IN POLISH) 5 CONFERENCE TIMETABLE 9 CONFERENCE PROGRAM 10 ABSTRACTS OF INVITED LECTURES 12 Andrzej B. Legocki – Evolution of symbiotic systems 13 Stefan Malepszy – Cucumbers secrets disclosed: the investigation on nuclear genome sequence completed 13 Krzysztof Pawłowski – Data, knowledge, and errors in biological databases - genes, genomes, relationship networks 14 Stanisław Bielecki – Biotechnological nanomaterials 14 Jan Szopa – The new generation of plant raw materials based on flax for medical and industrial use 15 Andrzej Jerzmanowski – Plant linker histones – universal mediators in ABA dependent transcriptional control? 16 Zofia Szweykowska-Kulińska – MicroRNAs biogenesis and their role in plant gene expression 17 Mariusz Jaskólski – PR-10 proteins: a reservoir of hydrophobic ligands in plant cells? 18 Jerzy Silberring – Clinical proteomics trends, pitfalls, and problems 19 Jerzy Kawiak – Adult stem cells in biology and medicine 20 Elżbieta Kuta – Plant holocentric chromosomes structure - evidence from molecular cytogenetics of Luzula species 21 Przemysław Wojtaszek – Known unknowns. New functions of plant cell walls and their components 22 Elżbieta Wyroba – Isoforms and isotypes of Rab proteins in plant and animal cells 22 Andrzej K. Kononowicz – New vistas in plant bioreaktor technologies 23 ABSTRACTS OF POSTER PRESENTATIONS – SECTION I 25 The Authors are kindly requested to be at their posters ABSTRACTS OF POSTER PRESENTATIONS – SECTION II 76 The Authors are kindly requested to be at their posters AUTHOR’S INDEX 110 NOTES 115 4 Conference on The Challenges of Contemporary Cell Biology – April 20-21, 2009 PROFESSOR MARIA J. OLSZEWSKA Maria Joanna Olszewska, cell biology, molecular cytogenetics, Born Apr. 21, 1929, Dąbrówka Polska, Poland. Education: High Sch. of Agriculture - Eng. (1949); University of Łódź – M.Sc. (1950), PhD (1956), Dr. Sci. (1960). Rockefeller Foundation fellowship for post-doctoral studies in prof. Brachet’s Laboratory (1959-1960, Brussels, Belgium). Associate professor (1969), full professor (1978). University of Łódź: assistant, senior assistant, docent (1950-1971); head of the Laboratory of Cytochemistry (1961-1971), head of the Department of Plant Cytology and Cytochemistry (1971-1999). Since 1999 retired, affiliated with the Dept. of General Genetics, Plant Molecular Biology and Biotechnology, University of Łódź, Research concerns the role of cell nucleus, synthesis of nuclear DNA and RNA, cell cycle in plants and molecular cytogenetics. Corresponding member of the Polish Academy of Sciences (1989), full member (2005). President of the Łódź Branch of the Polish Academy of Sciences (1993-1998), member of the Praesidium of the PAS (1993-2006). Author and co-author, editor and co-editor of five handbooks (in Polish). Co- editor of a journal “Advances in Cell Biology” (in Polish – Postępy Biologii Komórki, articles concerning genetics and plant cell biology). Honours: Polonia Resituta Crosses III, II and I Class; Honorary member of the Soc. Sci. Lodzensis, Polish Botanical Soc., Polish Histo- and Cytochemical Soc., Polish Soc. of Cell Biology. Selected publications: Olszewska M.J., Brachet J. 1960. Influence of localized ultra-violet irradiation on the incorporation of adenine-8-14C and D,L-methionine35S in Acetabularia mediterranea. Nature 187: 954-955. Olszewska M.J., Wroński M., Fortak W. 1967. A histochemical method for revealing disulphide bonds by means of hydrogen selenide. Folia Histochem. Cytochem. 5: 7-14. Olszewska M.J., Godlewski M. 1972. Autoradiographic study of the synthesis of nucleic acids and protein during the cell cycle of synchronously dividing antheridial filaments in Chara vulgaris L. Folia Histochem Cytochem. 10: 245-256. Olszewska M.J. 1978. Chromatin condensation in late G2 phase as a factor related to the earlier initiation of mitosis in successive generations of antheridial filaments of Chara vulgaris. Microsc. Acta 80: 115-126. Olszewska M.J., Damsz B., Rabęda E., 1983. DNA endoreplication and increase in number of chloroplasts during leaf differentiation in five monocotyledonous species with different 2C DNA content. Protoplasma 116: 41-50. Olszewska M.J., Osiecka R. 1983. The relationship between 2C DNA content, life cycle type, systematic position and the dynamics of DNA replication in parenchyma nuclei during growth and 5 Conference on The Challenges of Contemporary Cell Biology – April 20-21, 2009 differentiation of roots in some dicotyledonous herbaceaous species. Biochem. Physiol. Pflanzen 178: 581-599. Olszewska M.J., Damsz B., Kuran H., Marciniak K. 1984. Enhanced rRNA transport from nucleoli into cytoplasm at G1/S, S/G2 and G2/M transitory points of the cell cycle in root meristem of Helianthus annuus L. Eur. J. Cell Biol. 33: 1-6. Olszewska M.J., Kononowicz A.K., Maszewski J., Mądrzak C., Konieczny A., Legocki A.B. 1989. Changes in DNA content during rhizobial nodule development in Lupinus luteus L. II. In situ hybridization of cDNA coding for leghemoglobin. Biol. Zent. Bl. 108: 231-239. Olszewska M.J., Marciniak K., Kuran H. 1990. The timing of synthesis of proteins required for mitotic spindle and phragmoplast in partially synchronized root meristems of Vicia faba L. Eur. J. Cell Biol. 53: 89-92. Olszewska M.J., Karłowski W., Legocki A.B. 1994. In situ hybridization of two nodule-specific gene products from yellow lupin. Folia Histochem. Cytobiol. 32: 205-208. Olszewska M.J., Gernand D., Godlewski M., Kunachowicz A. 1997. DNA methylation during antheridial filament development and spermiogenesis in Chara vulgaris L. (Charophyceae) analyzed by in situ nick-translation. Eur. J. Phycol. 32: 287-291. Sakowicz T., Olszewska M.J. 1997. DNA content, interphase AgNOR-area, number of 3HrDNA hybridization signals and the methylation level in coding rDNA sequence in different organs of Lupinus luteus L. Genetica 99: 67-72. Łuchniak P., Małuszynska J., Olszewska M.J. 2000. Different DNA methylation pattern in A and B chromosome of Crepis capillaris detected by in situ nick-translation. Comparison with molecular methods. Folia Histochem. Cytobiol. 40: 325-330. Prof. zw. dr hab. Maria Joanna Olszewska HER SCIENTIFIC AND ACADEMIC LIFE ACHIEVEMENTS (in Polish) Prof. zw. dr hab. Maria Joanna Olszewska, studia wyższe inżynierskie ukończyła na Wydziale Ogrodniczym Wyższej Szkoły Gospodarstwa Wiejskiego w Łodzi (1946-49), a tytuł magistra uzyskała w 1950 r. na Uniwersytecie Łódzkim. Stopień doktora (kandydata nauk) Profesor Olszewska uzyskała w 1956 r., stopień doktora habilitowanego – 1960 r., tytuł profesora nadzwyczajnego – 1969 r. a tytuł profesora zwyczajnego – 1976 r. Wyrazem uznania dla wybitnych osiągnięć naukowych prof. dr hab. Marii J. Olszewskiej było wybranie Jej w roku 1989 r. na członka-korespondenta Polskiej Akademii Nauk, a w roku 2004 na członka rzeczywistego PAN. W latach 1961-70 Prof. dr hab. Maria J. Olszewska była kierownikiem Zakładu Cytochemii na Uniwersytecie Łódzkim, a w latach 1970-1999 – kierownikiem Katedry Cytologii i Cytochemii Roślin w UŁ. Dzięki wprowadzaniu nowoczesnych metod badawczych z zakresu cytochemii i cytogenetyki molekularnej, w Katedrze tej powstała szkoła naukowa, w ramach której wiele osób uzyskało stopnie doktora i doktora habilitowanego, a także tytuły
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