Physical Stream Assessment: a Review of Selected Protocols for Use in the Clean Water Act Section 404 Program

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Physical Stream Assessment: a Review of Selected Protocols for Use in the Clean Water Act Section 404 Program United States A rmy Corps of Engineers United States Environmental Protection Agency Regulatory Branch W etland Division W ashington, DC. 20314 W ashington, DC. 20460 PHYSICAL STREAM ASSESSMENT: A Review of Selected Protocols for Use in the Clean Water Act Section 404 Program September 2004 DISCLAIMER This review of physical stream assessment methods was funded wholly by the U.S. Environmental Protection Agency (EPA) and the U.S. Army Corps of Engineers (USACE) and conducted in support of the National Mitigation Action Plan. It has been subjected to review by the Federal Interagency Mitigation Workgroup and approved for release. Approval does not signify that the contents reflect the views of the Agencies, nor does mention of trade names or commercial products constitute endorsement or recommendation for use. This document is not a regulation itself, nor does it change or substitute for statutory provisions and EPA or USACE regulations. Thus, it does not impose legally binding requirements on EPA, USACE, States, or the regulated community. Prepared by Nutter & Associates, Inc. 1073 S. Milledge Avenue Athens, GA 30605 ii ACKNOWLEDGMENTS We wish to express our gratitude to Palmer Hough, U.S. Environmental Protection Agency, and Kathy Trott and Mike Rabbe, U.S. Army Corps of Engineers, for their assistance and support during compilation of this report. We are also grateful for preliminary reviews of the Stream Assessment Protocol questionnaire provided by Morris Flexner, U.S. Environmental Protection Agency, and Brian Riggers, U.S. Forest Service. We also received helpful insight from Brett Roper, U.S. Forest Service, during the preliminary phase of the project. Finally, we wish to thank all of the local, state, and federal agency representatives who provided information by responding to the Stream Assessment Protocol questionnaire. We hope that our efforts prove useful to the on-going maturation of stream assessment and restoration efforts across the country. Appropriate citation: Somerville, D.E. and B.A. Pruitt. 2004. Physical Stream Assessment: A Review of Selected Protocols for Use in the Clean Water Act Section 404 Program. September 2004, Prepared for the U.S. Environmental Protection Agency, Office of Wetlands, Oceans, and Watersheds, Wetlands Division (Order No. 3W-0503- NATX). Washington, D.C. 213 pp. Document No. EPA 843-S-12-002. iii TABLE OF CONTENTS DISCLAIMER ........................................................ ii ACKNOWLEDGMENTS................................................ iii TABLE OF CONTENTS ................................................iv LIST OF TABLES.....................................................vi LIST OF FIGURES................................................... vii LIST OF ABBREVIATIONS / ACRONYMS . viii 1.0 EXECUTIVE SUMMARY ........................................... 1 2.0 INTRODUCTION . 4 2.1 Objectives .................................................. 5 3.0 BACKGROUND ................................................. 7 3.1 Objectives of Stream Assessment................................ 7 3.2 Components of Stream Assessment Protocols ...................... 7 3.3 Accuracy and Precision of Physical Stream Assessment Data .......... 8 3.3.1 Evaluations of Visual-Based (Qualitative) Stream Habitat Classification and Assessment Variables . 9 3.3.2 Evaluations of Measurement-Based (Quantitative) Habitat Classification and Assessment Variables .................... 10 3.4 The Utility of Stream Classification ............................... 13 4.0 STREAM ASSESSMENT PROTOCOL QUESTIONNAIRE ............... 15 4.1 Objective of the Stream Assessment Protocol Questionnaire .......... 15 4.2 Questionnaire Results . 15 4.2.1 General Utility of Stream Assessments ...................... 17 4.2.2 Overview of Responses to Technical Questions ............... 17 4.2.2.1 Stream Classification ............................... 17 4.2.2.2 Specific Parameters and Methods ..................... 17 4.2.2.2.1 Physical Stream Assessment Variables ............. 18 4.2.2.2.2 Physiochemical Parameters ...................... 18 4.2.2.2.3 Habitat Classification and Assessment Variables ...... 19 4.2.2.3 Use of Reference Reach Conditions . ................. 19 4.2.2.4 Bankfull Stage or Discharge .......................... 19 4.2.3 Overview of Responses Related to Data Reduction and Synthesis ............................................ 20 4.2.3.1 Categorization of Stream Assessment Data . ............ 20 4.2.3.2 Relationships Among Stream Assessment Variables ...... 21 iv 4.2.3.3 Integration of Riparian Zones and Streams .............. 21 4.2.3.4 Seasonal Variability . 21 4.2.3.5 Minimizing Observer Bias............................ 22 4.2.3.6 Training.......................................... 22 4.2.3.7 Level of Effort..................................... 22 4.2.4 Future Needs for Stream Assessments ..................... 23 5.0 STREAM ASSESSMENT PROTOCOLS . 25 5.1 Existing Protocol Reviews ..................................... 25 5.2 Protocol Review Procedures . 25 5.3 Clean Water Act Section 404/401 Regulatory Protocols .............. 27 5.3.1 Federal Regulatory Protocol Reviews ....................... 28 5.3.2 State and Local Regulatory Protocol Reviews................. 30 5.4 Non-Regulatory Protocol Reviews ............................... 30 5.5 Discussion ................................................. 32 6.0 RECOMMENDATIONS .......................................... 35 7.0 REFERENCES................................................. 38 APPENDIX A Stream Assessment Protocol Questionnaire APPENDIX B Regulatory Protocol Reviews APPENDIX C Non-Regulatory Protocol Reviews APPENDIX D Bibliography of Protocols v LIST OF TABLES Table 1. Respondents of the Stream Assessment Protocol questionnaire. ...... 44 Table 2. Programmatic uses of stream assessments cited by respondents of the Stream Assessment Protocol questionnaire. ...................... 46 Table 3. Components/Methods of physical stream assessments cited by respondents of the Stream Assessment Protocol questionnaire. ................. 47 Table 4. Physiochemical parameters included in stream assessments cited by respondents of the Stream Assessment Protocol questionnaire. ....... 48 Table 5. Methods to reduce observer variability in stream assessment data cited by respondents of the Stream Assessment Protocol questionnaire. ....... 49 Table 6. Time required to execute stream assessments in the field and in the office according to respondents of the Stream Assessment Protocol questionnaire. 50 Table 7a. Programmatic summary of regulatory stream assessment and mitigation protocols.................................................. 51 Table 7b. Technical summary of regulatory stream assessment and mitigation protocols.................................................. 53 Table 8a. Programmatic summary of non-regulatory stream assessment and mitigation protocols.......................................... 55 Table 8b. Technical summary of non-regulatory stream assessment and mitigation protocols.................................................. 58 vi LIST OF FIGURES Figure 1. Geographic distribution of respondents to the Stream Assessment Protocol questionnaire. 16 vii LIST OF ABBREVIATIONS / ACRONYMS BEHI Bank Erosion Hazard Index CFR Code of Federal Regulations CWA Clean Water Act D50 Median particle size, typically referring to riffle substrate FEMA Federal Emergency Management Agency GIS Geographic Information System GPS Global Positioning System HUC Hydrologic Unit Code IBI Index of Biotic Integrity NPDES National Pollutant Discharge Elimination System NRCS U.S.D.A. Natural Resources Conservation Service PSD Particle Size Distribution (typically referring to channel substrate) RBP Rapid Bioassessment Protocol SCS U.S.D.A. Soil Conservation Service (now referred to as NRCS) TVA Tennessee Valley Authority USACE U.S. Army Corps of Engineers USBLM U.S. Bureau of Land Management USDA U.S. Department of Agriculture USDC U.S. Department of Commerce USDOD U.S. Department of Defense USDHUD U.S. Department of Housing and Urban Development USDOI U.S. Department of the Interior USEPA U.S. Environmental Protection Agency USFS U.S. Forest Service USFWS U.S. Fish and Wildlife Service USGS U.S. Geologic Survey W/D Width:Depth Ratio (Bankfull Stream Dimensions) WQC Water Quality Certification viii 1.0 EXECUTIVE SUMMARY We reviewed stream assessment and mitigation protocols collected from throughout the United States in an effort to identify attributes most pertinent to the Clean Water Act (CWA) Section 404 regulatory program. We also solicited input from practitioners utilizing stream assessment protocols nationwide in an effort to identify common attributes of existing protocols and to seek recommendations for future training and technical needs to enhance stream assessment. Subjective, visual-based assessment protocols are rapid and relatively easy to use. They may provide an acceptable means of watershed-scale stream assessment or coarse level prioritization. However, they are rarely detailed enough to be used for project design, and their accuracy and precision has been subject to debate. In contrast, objective, quantitative assessments, often referred to as transect-based or measurement-based assessments, are time consuming and labor intensive. Detailed quantitative assessment is a prerequisite to project design and should be based on comparison to stable reference conditions. However, the precision of even some commonly utilized quantitative stream assessment metrics has been
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