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Rostaniha 17(2), 2016 115 Archive of SID Ghosta et al. / Study on coprophilous fungi …/ Rostaniha 17(2), 2016 115 DOI: http://dx.doi.org/10.22092/botany.2017.109405 رﺳﺘﻨﯿﻬﺎ Rostaniha 17(2): 115–126 (2016) (1395) 115-126 :(2)17 Study on coprophilous fungi: new records for Iran mycobiota Received: 26.04.2016 / Accepted: 23.10.2016 Youbert Ghosta: Associate Prof. in Plant Pathology, Department of Plant Protection, Urmia University, Urmia, Iran ([email protected]) Alireza Poursafar: Researcher, Department of Plant Protection, College of Agriculture and Natural Resources, University of Tehran, Karaj, Iran Jafar Fathi Qarachal: Researcher, Department of Plant Protection, Urmia University, Urmia, Iran Abstract In a study on coprophilous fungi, different samples including cow, sheep and horse dung and mouse feces were collected from different locations in West and East Azarbaijan provinces (NW Iran). Isolation of the fungi was done based on moist chamber culture method. Purification of the isolated fungi was done by single spore culture method. Several fungal taxa were obtained. Identification of the isolates at species level was done based on morphological characteristics and data obtained from internal transcribed spacer (ITS) regions of ribosomal DNA sequences. In this paper, five taxa viz. Arthrobotrys conoides, Botryosporium longibrachiatum, Cephaliophora irregularis, Oedocephalum glomerulosum, and Podospora pauciseta, all of them belong to Ascomycota, are reported and described. All these taxa are new records for Iran mycobiota. Keywords: Ascomycota, biodiversity, dung fungi, internal transcribed spacer, moist chamber ﻣﻄﺎﻟﻌﻪ ﻗﺎرچﻫﺎي ﮐﻮﭘﺮوﻓﯿﻞ: ﺛﺒﺖﻫﺎي ﺟﺪﯾﺪ ﺑﺮاي ﺑﯿﻮﺗﺎي ﻗﺎرﭼﯽ اﯾﺮان درﯾﺎﻓﺖ: 07/02/1395 / ﭘﺬﯾﺮش: 1395/08/02 ﯾﻮﺑﺮت ﻗﻮﺳﺘﺎ: داﻧﺸﯿﺎر ﺑﯿﻤﺎريﺷﻨﺎﺳﯽ ﮔﯿﺎﻫﯽ، ﮔﺮوه ﮔﯿﺎهﭘﺰﺷﮑﯽ، داﻧﺸﮕﺎه اروﻣﯿﻪ، اروﻣﯿﻪ، اﯾﺮان ([email protected]) ﻋﻠﯿﺮﺿﺎ ﭘﻮرﺻﻔﺮ: ﮐﺎرﺷﻨﺎس ارﺷﺪ ﺑﯿﻤﺎريﺷﻨﺎﺳﯽ ﮔﯿﺎﻫﯽ، ﮔﺮوه ﮔﯿﺎهﭘﺰﺷﮑﯽ، ﭘﺮدﯾﺲ ﮐﺸﺎورزي و ﻣﻨﺎﺑﻊ ﻃﺒﯿﻌﯽ، داﻧﺸﮕﺎه ﺗﻬﺮان، ﮐﺮج، اﯾﺮان ﺟﻌﻔﺮ ﻓﺘﺤﯽ ﻗﺮهﭼﺎل: ﮐﺎرﺷﻨﺎس ارﺷﺪ ﺑﯿﻤﺎريﺷﻨﺎﺳﯽ ﮔﯿﺎﻫﯽ، ﮔﺮوه ﮔﯿﺎهﭘﺰﺷﮑﯽ، داﻧﺸﮑﺪه ﮐﺸﺎورزي، داﻧﺸﮕﺎه اروﻣﯿﻪ، اروﻣﯿﻪ، اﯾﺮان ﺧﻼﺻﻪ ROSTANIHA در ﻣﻄﺎﻟﻌﻪ ﻗﺎرچﻫﺎي ﮐﻮﭘﺮوﻓﯿﻞ (ﺳﺮﮔﯿﻦدوﺳﺖ)، ﻧﻤﻮﻧﻪﻫﺎي ﻣﺨﺘﻠﻒ از ﭘﻬﻦ ﮔﺎو، ﮔﻮﺳﻔﻨﺪ، اﺳﺐ و ﻓﻀﻠﻪﻫﺎي ﻣﻮش، از ﻣﻨﺎﻃﻖ ﻣﺨﺘﻠﻒ در اﺳﺘﺎنﻫﺎي آذرﺑﺎﯾﺠﺎن ﻏﺮﺑﯽ و ﺷﺮﻗﯽ ﺟﻤﻊآوري ﺷﺪﻧﺪ. ﺟﺪاﺳﺎزي ﻗﺎرچﻫﺎ ﺑﺮاﺳﺎس روش ﮐﺸﺖ در ﻣﺤﻔﻈﻪ ﻣﺮﻃﻮب اﻧﺠﺎم ﮔﺮﻓﺖ. ﺧﺎﻟﺺﺳﺎزي ﺟﺪاﯾﻪﻫﺎي ﻗﺎرچﻫﺎ ﺑﺮاﺳﺎس روش ﺗﮏﻫﺎگ ﮐﺮدن اﻧﺠﺎم ﮔﺮﻓﺖ. ﭼﻨﺪﯾﻦ آراﯾﻪ ﻗﺎرﭼﯽ ﻣﺨﺘﻠﻒ در اﯾﻦ ﻣﻄﺎﻟﻌﻪ ﺑﻪ دﺳﺖ آﻣﺪ. ﻋﻤﻞ ﺷﻨﺎﺳﺎﯾﯽ ﺟﺪاﯾﻪﻫﺎ در ﺳﻄﺢ ﮔﻮﻧﻪ ﺑﺮاﺳﺎس وﯾﮋﮔﯽﻫﺎي رﯾﺨﺖﺷﻨﺎﺧﺘﯽ و اﻃﻼﻋﺎت ﺑﻪ دﺳﺖ آﻣﺪه از ﺗﻮاﻟﯽﯾﺎﺑﯽ ﻧﺎﺣﯿﻪ آي.ﺗﯽ.اس. از دي.ان.اي رﯾﺒﻮزوﻣﯽ ﻫﺴﺘﻪاي اﻧﺠﺎم ﮔﺮﻓﺖ. در اﯾﻦ ﻣﻘﺎﻟﻪ، ﭘﻨﺞ آراﯾﻪ ﺷﺎﻣﻞ ,Arthrobotrys conoides Botryosporium longibrachiatum, Cephaliophora irregularis, Oedocephalum glomerulosum و Podospora pauciseta ﺑﻪ ﻋﻨﻮان آراﯾﻪﻫﺎي ﺟﺪﯾﺪ ﺑﺮاي ﺑﯿﻮﺗﺎي ﻗﺎرﭼﯽ اﯾﺮان ﮔﺰارش و ﺗﻮﺻﯿﻒ ﻣﯽﺷﻮﻧﺪ. واژهﻫﺎي ﮐﻠﯿﺪي: آﺳﮑﻮﻣﯿﮑﻮﺗﺎ، ﺑﺨﺶ روﻧﻮﯾﺴﯽ ﺷﻮﻧﺪه داﺧﻠﯽ، ﺗﻨﻮع زﯾﺴﺘﯽ، ﻗﺎرچﻫﺎي ﭘﻬﻦدوﺳﺖ، ﻣﺤﻔﻈﻪ ﻣﺮﻃﻮب www.SID.ir Archive of SID 116 Ghosta et al. / Study on coprophilous fungi …/ Rostaniha 17(2), 2016 Introduction species from 11 genera in five orders were identified Coprophilous fungi encompass a diverse (Mungai et al. 2011). According to Misra et al. (2014), ecological group of fungi which are adapted to live in 52 genera of Zygomycota (s.l.), 169 of Ascomycota, and animal feces and play an important role in the 33 of Basidiomycota have been associated with at least decomposition and recycling of nutrients, the carbon one type of dung as a substrate. Research on flow and ecosystem energetic (Angel & Wicklow 1975, coprophilous fungi in Iran is still rare and the Richardson 2001, Melo et al. 2016). These fungi have biodiversity of dung fungi was remained unexplored. The developed certain features to adapt themselves to the main objective of this study is to isolate and identify dung environment (Misra et al. 2014), are able to fungi found on various dung types in different locations withstand and in most cases, dependent on passes of West and East Azarbaijan provinces (NW Iran). through the digestive tract of the animals to facilitate spore germination (Richardson 2003, 2008). Materials and Methods Representatives of nearly all taxonomic groups of fungi - Dung samples could be found in animal dung (Crous et al. 2009) and it Samples of cow, horse and sheep dung and mouse seems that they are specialized to some extent on feces which were appeared to be relatively recent were particular types of dung (Krug et al. 2004). Dung collected from different parts of West and East contains a large quantity of readily available nutrients Azarbaijan provinces (NW Iran). Each sample was such as carbohydrates, high nitrogen content, vitamins placed in a clean paper bag, labeled and transferred to the and growth factors (Webster 1970). Some laboratory. The samples were air dried and stored at physicochemical factors such as temperature and room temperature in sealed paper bags for further moisture content, pH, stage of decay and type of animal examinations. have profound influence on dung mycobiota. Many - Fungal isolation coprophilous micro-organisms produce important Fungi isolation was done based on moist chamber chemicals that may inhibit competing and invading method. Each dung sample was placed in a sterile Petri organisms or stimulate fungal growth and are considered plate (10 cm diameter) containing a moistened sterile to have promising biological activity (Singh & Webster filter paper. Care was taken to ensure that the samples 1973, Wicklow 1988, Gloer 1997, Lehr et al. 2006). were not too wet. Petri plates were incubated at room Based on available literature, most describedROSTANIHA dung fungi temperature (20–25º C) and under ambient light for two were attained from dung of various animals in temperate months. Plates were examined periodically with a regions of the world. Diversity, distribution and different dissecting microscope for fungal growth and sporulation capabilities of coprophilous fungi have been reported in or fruit body formation. Where needed, a small amount several studies (Nyberg & Persson 2002, Bell 2005, of sterile distilled water was added to moisten the filter Piasai & Manoch 2009, Mungai et al. 2011, Prydiuk paper. The growing fungi were directly isolated using a 2011). In a study on coprophilous fungi from 32 fine sterile needle to pick up the fungal spores from the herbivore dung samples in Iceland, 81 species of dung samples and were transferred onto the PDA (potato coprophilous fungi were identified (Richardson 2004). In dextrose agar, Merck, Germany) medium. Pure cultures a latter addition to the coprophilous fungi of Iceland, 19 of the growing fungi were obtained by single spore new species were recorded (Richardson 2011). In a study method (Crous et al. 2009). Purified fungi were on the fungi from dung of four domesticated wild transferred into slants of PCA (potato carrot agar) and herbivores, 52 species were identified (Gupta 2010). PDA culture media containing a piece of filter paper for Study on coprophilous ascomycetes from northern storage. In cases that fruit bodies were formed, these Thailand showed high diversity of these fungi and fungal structures were removed individually and www.SID.ir Archive of SID Ghosta et al. / Study on coprophilous fungi …/ Rostaniha 17(2), 2016 117 mounted in pure Lactic acid or sterile distilled water for sequences were performed using the BLASTn examination at higher magnifications. Representative algorithm from GenBank (http://www.ncbi.nlm.nih.gov/) isolates were deposited in the Fungal Reference and incorporated to the analysis (Table 1). Collection of the Ministry of Jihad-e-Agriculture The multiple sequence alignment was done (“IRAN”) located at Iranian Research Institute of Plant with the program MAFFT V. 7.304 Protection, Tehran, and the Fungal Culture Collection of (http://mafft.cbrc.jp/alignment/server/index.html) (Katoh the Department of Plant Protection, Faculty of & Standley 2013), and was adjusted manually. For Agriculture, Urmia University, Urmia, Iran (UU). phylogenetic analysis, distance matrix was calculated - Identification of fungi using Kimura two parameter method (Kimura 1980), and Morphological characteristics were assessed for analyzed with the Neighbor Joining method (Saitou & 7- and 14-day-old cultures on PCA, PDA and MEA Nei 1987) in MEGA 6 (Tamura et al. 2013). The based on identification manuals (Haard 1968, Mirza & reliability of inferred phylogenetic tree was evaluated by Cain 1969, Stalpers 1974, Richardson & Watling 1997, bootstrap values with 1000 replicates (Felsenstein 1985). Bell 2005, Doveri 2008). Colony colors were described Ermothecium gossypii (GenBank accession number: based on Rayners mycological color chart (Rayner 1970). AY046216) was used as outgroup. Fifty measurements of each characteristic taxonomic structure were made. Identification was made based on Results macro- and micro-morphological characteristics and A total of 60 dung samples were processed. sequences obtained from ITS region of the nuclear A great diversity of fungal forms was seen on the ribosomal DNA. surfaces of the samples and was isolated as pure cultures. - DNA extraction, PCR amplification and sequencing In this paper, five taxa viz. Arthrobotrys conoides Isolates were grown on PDB (potato dextrose Drechsler, Botryosporium longibrachiatum (Oudem.) broth) at 22–25° C for seven days. DNA was extracted Maire, Cephaliophora irregularis Thaxt., Oedocephalum from harvested mycelia based on Zhong and Steffenson glomerulosum (Bull.) Sacc., and Podospora pauciseta method (Zhong & Steffenson 2001). The internal (Ces.) Traverso are introduced
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