SEPT12 Interacts with SEPT6 and This Interaction Alters the Filament Structure of SEPT6 in Hela Cells
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Protein Kinase A-Mediated Septin7 Phosphorylation Disrupts Septin Filaments and Ciliogenesis
cells Article Protein Kinase A-Mediated Septin7 Phosphorylation Disrupts Septin Filaments and Ciliogenesis Han-Yu Wang 1,2, Chun-Hsiang Lin 1, Yi-Ru Shen 1, Ting-Yu Chen 2,3, Chia-Yih Wang 2,3,* and Pao-Lin Kuo 1,2,4,* 1 Department of Obstetrics and Gynecology, College of Medicine, National Cheng Kung University, Tainan 701, Taiwan; [email protected] (H.-Y.W.); [email protected] (C.-H.L.); [email protected] (Y.-R.S.) 2 Institute of Basic Medical Sciences, College of Medicine, National Cheng Kung University, Tainan 701, Taiwan; [email protected] 3 Department of Cell Biology and Anatomy, College of Medicine, National Cheng Kung University, Tainan 701, Taiwan 4 Department of Obstetrics and Gynecology, National Cheng-Kung University Hospital, Tainan 704, Taiwan * Correspondence: [email protected] (C.-Y.W.); [email protected] (P.-L.K.); Tel.: +886-6-2353535 (ext. 5338); (C.-Y.W.)+886-6-2353535 (ext. 5262) (P.-L.K.) Abstract: Septins are GTP-binding proteins that form heteromeric filaments for proper cell growth and migration. Among the septins, septin7 (SEPT7) is an important component of all septin filaments. Here we show that protein kinase A (PKA) phosphorylates SEPT7 at Thr197, thus disrupting septin filament dynamics and ciliogenesis. The Thr197 residue of SEPT7, a PKA phosphorylating site, was conserved among different species. Treatment with cAMP or overexpression of PKA catalytic subunit (PKACA2) induced SEPT7 phosphorylation, followed by disruption of septin filament formation. Constitutive phosphorylation of SEPT7 at Thr197 reduced SEPT7-SEPT7 interaction, but did not affect SEPT7-SEPT6-SEPT2 or SEPT4 interaction. -
1 Supporting Information for a Microrna Network Regulates
Supporting Information for A microRNA Network Regulates Expression and Biosynthesis of CFTR and CFTR-ΔF508 Shyam Ramachandrana,b, Philip H. Karpc, Peng Jiangc, Lynda S. Ostedgaardc, Amy E. Walza, John T. Fishere, Shaf Keshavjeeh, Kim A. Lennoxi, Ashley M. Jacobii, Scott D. Rosei, Mark A. Behlkei, Michael J. Welshb,c,d,g, Yi Xingb,c,f, Paul B. McCray Jr.a,b,c Author Affiliations: Department of Pediatricsa, Interdisciplinary Program in Geneticsb, Departments of Internal Medicinec, Molecular Physiology and Biophysicsd, Anatomy and Cell Biologye, Biomedical Engineeringf, Howard Hughes Medical Instituteg, Carver College of Medicine, University of Iowa, Iowa City, IA-52242 Division of Thoracic Surgeryh, Toronto General Hospital, University Health Network, University of Toronto, Toronto, Canada-M5G 2C4 Integrated DNA Technologiesi, Coralville, IA-52241 To whom correspondence should be addressed: Email: [email protected] (M.J.W.); yi- [email protected] (Y.X.); Email: [email protected] (P.B.M.) This PDF file includes: Materials and Methods References Fig. S1. miR-138 regulates SIN3A in a dose-dependent and site-specific manner. Fig. S2. miR-138 regulates endogenous SIN3A protein expression. Fig. S3. miR-138 regulates endogenous CFTR protein expression in Calu-3 cells. Fig. S4. miR-138 regulates endogenous CFTR protein expression in primary human airway epithelia. Fig. S5. miR-138 regulates CFTR expression in HeLa cells. Fig. S6. miR-138 regulates CFTR expression in HEK293T cells. Fig. S7. HeLa cells exhibit CFTR channel activity. Fig. S8. miR-138 improves CFTR processing. Fig. S9. miR-138 improves CFTR-ΔF508 processing. Fig. S10. SIN3A inhibition yields partial rescue of Cl- transport in CF epithelia. -
Analyzing the Genes Related to Alzheimer's Disease Via a Network
Hu et al. Alzheimer's Research & Therapy (2017) 9:29 DOI 10.1186/s13195-017-0252-z RESEARCH Open Access Analyzing the genes related to Alzheimer’s disease via a network and pathway-based approach Yan-Shi Hu1, Juncai Xin1, Ying Hu1, Lei Zhang2* and Ju Wang1* Abstract Background: Our understanding of the molecular mechanisms underlying Alzheimer’s disease (AD) remains incomplete. Previous studies have revealed that genetic factors provide a significant contribution to the pathogenesis and development of AD. In the past years, numerous genes implicated in this disease have been identified via genetic association studies on candidate genes or at the genome-wide level. However, in many cases, the roles of these genes and their interactions in AD are still unclear. A comprehensive and systematic analysis focusing on the biological function and interactions of these genes in the context of AD will therefore provide valuable insights to understand the molecular features of the disease. Method: In this study, we collected genes potentially associated with AD by screening publications on genetic association studies deposited in PubMed. The major biological themes linked with these genes were then revealed by function and biochemical pathway enrichment analysis, and the relation between the pathways was explored by pathway crosstalk analysis. Furthermore, the network features of these AD-related genes were analyzed in the context of human interactome and an AD-specific network was inferred using the Steiner minimal tree algorithm. Results: We compiled 430 human genes reported to be associated with AD from 823 publications. Biological theme analysis indicated that the biological processes and biochemical pathways related to neurodevelopment, metabolism, cell growth and/or survival, and immunology were enriched in these genes. -
SEPT12-Microtubule Complexes Are Required for Sperm Head and Tail Formation
Int. J. Mol. Sci. 2013, 14, 22102-22116; doi:10.3390/ijms141122102 OPEN ACCESS International Journal of Molecular Sciences ISSN 1422-0067 www.mdpi.com/journal/ijms Article SEPT12-Microtubule Complexes Are Required for Sperm Head and Tail Formation Pao-Lin Kuo 1,†, Han-Sun Chiang 2,†, Ya-Yun Wang 1, Yung-Che Kuo 3, Mei-Feng Chen 4, I-Shing Yu 5, Yen-Ni Teng 6, Shu-Wha Lin 7 and Ying-Hung Lin 2,* 1 Department of Obstetrics & Gynaecology, National Cheng Kung University, No. 1, University Road, Tainan City 701, Taiwan; E-Mails: [email protected] (P.-L.K.); [email protected] (Y.-Y.W.) 2 Graduate Institute of Basic Medicine, Fu Jen Catholic University, No. 510, Zhongzheng Road, Xinzhuang District, New Taipei City 242, Taiwan; E-Mail: [email protected] 3 Graduate Institute of Basic Medical Sciences, National Cheng Kung University, No. 1, University Road, Tainan City 701, Taiwan; E-Mail: [email protected] 4 Research Center for Emerging Viral Infections, Chang Gung University, No. 259 Wen-Hwa 1st Road, Kwei-Shan Taoyuan 333, Taiwan; E-Mail: [email protected] 5 Laboratory Animal Center, National Taiwan University College of Medicine, No. 1, Sec. 4, Roosevelt Road, Taipei 106, Taiwan; E-Mail: [email protected] 6 Department of Biological Sciences and Technology, National University of Tainan, No. 33, Sec. 2, Shulin Street, West Central District, Tainan City 700, Taiwan; E-Mail: [email protected] 7 Clinical Laboratory Sciences and Medical Biotechnology, National Taiwan University, National Taiwan University Hospital, No. -
The Potential Role of SEPT6 in Liver Fibrosis and Human Hepatocellular Carcinoma. Arch Gastroenterol Res
https://www.scientificarchives.com/journal/archives-of-gastroenterology-research Archives of Gastroenterology Research Commentary The Potential Role of SEPT6 in Liver Fibrosis and Human Hepatocellular Carcinoma Yuhui Fan1,2,3*, Mei Liu3* 1Department of Medicine II, Liver Center Munich, University Hospital, Ludwig-Maximilians-University of Munich, Munich, Germany 2Comprehensive Cancer Center München TUM, Klinikum rechts der Isar, Technical University of Munich (TUM), Munich, Germany 3Institute of Liver and Gastrointestinal Diseases, Department of Gastroenterology, Tongji Hospital of Tongji Medical College, Huazhong University of Science and Technology, Wuhan, Hubei 430030, China *Correspondence should be addressed to Yuhui Fan; [email protected], Mei Liu; [email protected] Received date: May 19, 2020, Accepted date: May 26, 2020 Copyright: © 2020 Fan Y, et al. This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited. Liver fibrosis is a reversible wound-healing response in and chemotactic has been regarded as the main driver which a variety of cells and factors are involved in and of liver fibrosis [7], thus ECM production is enhanced results in excessive deposition of extracellular matrix [8]. Paracrine signals from damaged epithelial cells, (ECM) [1]. Cirrhosis is one of the significant causes of fibrotic tissue microenvironment, disorders of immunity portal hypertension and end-stage liver disease, and it is and systemic metabolism, intestinal dysbiosis and the 14th most common cause of death around the world. hepatitis virus products can directly or indirectly induce Approximately 1.03 million people worldwide die from HSCs activation [9]. -
SEPT12–NDC1 Complexes Are Required for Mammalian Spermiogenesis
International Journal of Molecular Sciences Article SEPT12–NDC1 Complexes Are Required for Mammalian Spermiogenesis Tsung-Hsuan Lai 1,2,3, Ying-Yu Wu 4, Ya-Yun Wang 5, Mei-Feng Chen 6, Pei Wang 2, Tsung-Ming Chen 7, Yi-No Wu 4, Han-Sun Chiang 4, Pao-Lin Kuo 8 and Ying-Hung Lin 4,* 1 Department of Obstetrics and Gynecology, Cathay General Hospital, Taipei 106, Taiwan; [email protected] 2 School of Medicine, Fu Jen Catholic University, New Taipei City 242, Taiwan; [email protected] 3 Institute of Systems Biology and Bioinformatics, National Central University, Jhongli City, Taoyuan Country 320, Taiwan 4 Graduate Institute of Biomedical and Pharmaceutical Science, Fu Jen Catholic University, New Taipei City 242, Taiwan; [email protected] (Y.-Y.W.); [email protected] (Y.-N.W.); [email protected] (H.-S.C.) 5 Department of Chemistry, Fu Jen Catholic University, New Taipei City 242, Taiwan; [email protected] 6 Bone and Joint Research Center, Chang Gung Memorial Hospital, Taoyuan 333, Taiwan; [email protected] 7 Department and Graduate Institute of Aquaculture, National Kaohsiung Marine University, Kaohsiung 811, Taiwan; [email protected] 8 Department of Obstetrics & Gynecology, College of Medicine, National Cheng Kung University, Tainan 701, Taiwan; [email protected] * Correspondence: [email protected]; Tel.: +886-2-2905-3399; Fax: +886-2-2905-3415 Academic Editor: William Chi-shing Cho Received: 8 September 2016; Accepted: 7 November 2016; Published: 16 November 2016 Abstract: Male factor infertility accounts for approximately 50 percent of infertile couples. -
A Comprehensive Transcriptome Analysis of Skeletal Muscles in Two Polish Pig Breeds Differing in Fat and Meat Quality Traits
Genetics and Molecular Biology, 41, 1, 125-136 (2018) Copyright © 2018, Sociedade Brasileira de Genética. Printed in Brazil DOI: http://dx.doi.org/10.1590/1678-4685-GMB-2016-0101 Research Article A comprehensive transcriptome analysis of skeletal muscles in two Polish pig breeds differing in fat and meat quality traits Katarzyna Piórkowska1 , Kacper òukowski3, Katarzyna Ropka-Molik1, Miros»aw Tyra2 and Artur Gurgul1 1Department of Animal Molecular Biology, National Research Institute of Animal Production, Balice, Poland. 2Department of Pig Breeding, National Research Institute of Animal Production, Balice, Poland. 3Department of Cattle Breeding, National Research Institute of Animal Production, Balice, Poland. Abstract Pork is the most popular meat in the world. Unfortunately, the selection pressure focused on high meat content led to a reduction in pork quality. The present study used RNA-seq technology to identify metabolic process genes related to pork quality traits and fat deposition. Differentially expressed genes (DEGs) were identified between pigs of Pulawska and Polish Landrace breeds for two the most important muscles (semimembranosus and longissimus dorsi). A total of 71 significant DEGs were reported: 15 for longissimus dorsi and 56 for semimembranosus muscles. The genes overexpressed in Pulawska pigs were involved in lipid metabolism (APOD, LXRA, LIPE, AP2B1, ENSSSCG00000028753 and OAS2) and proteolysis (CST6, CTSD, ISG15 and UCHL1). In Polish Landrace pigs, genes playing a role in biological adhesion (KIT, VCAN, HES1, SFRP2, CDH11, SSX2IP and PCDH17), actin cytoskeletal organisation (FRMD6, LIMK1, KIF23 and CNN1) and calcium ion binding (PVALB, CIB2, PCDH17, VCAN and CDH11) were transcriptionally more active. The present study allows for better understanding of the physiological processes associated with lipid metabolism and muscle fiber organization. -
A Proteome-Scale Map of the Human Interactome Network
Resource A Proteome-Scale Map of the Human Interactome Network Thomas Rolland,1,2,19 Murat Tasxan,1,3,4,5,19 Benoit Charloteaux,1,2,19 Samuel J. Pevzner,1,2,6,7,19 Quan Zhong,1,2,8,19 Nidhi Sahni,1,2,19 Song Yi,1,2,19 Irma Lemmens,9 Celia Fontanillo,10 Roberto Mosca,11 Atanas Kamburov,1,2 Susan D. Ghiassian,1,12 Xinping Yang,1,2 Lila Ghamsari,1,2 Dawit Balcha,1,2 Bridget E. Begg,1,2 Pascal Braun,1,2 Marc Brehme,1,2 Martin P. Broly,1,2 Anne-Ruxandra Carvunis,1,2 Dan Convery-Zupan,1,2 Roser Corominas,13 Jasmin Coulombe-Huntington,1,14 Elizabeth Dann,1,2 Matija Dreze,1,2 Ame´ lie Dricot,1,2 Changyu Fan,1,2 Eric Franzosa,1,14 Fana Gebreab,1,2 Bryan J. Gutierrez,1,2 Madeleine F. Hardy,1,2 Mike Jin,1,2 Shuli Kang,13 Ruth Kiros,1,2 Guan Ning Lin,13 Katja Luck,1,2 Andrew MacWilliams,1,2 Jo¨ rg Menche,1,12 Ryan R. Murray,1,2 Alexandre Palagi,1,2 Matthew M. Poulin,1,2 Xavier Rambout,1,2,15 John Rasla,1,2 Patrick Reichert,1,2 Viviana Romero,1,2 Elien Ruyssinck,9 Julie M. Sahalie,1,2 Annemarie Scholz,1,2 Akash A. Shah,1,2 Amitabh Sharma,1,12 Yun Shen,1,2 Kerstin Spirohn,1,2 Stanley Tam,1,2 Alexander O. Tejeda,1,2 Shelly A. Trigg,1,2 Jean-Claude Twizere,1,2,15 Kerwin Vega,1,2 Jennifer Walsh,1,2 Michael E. -
Identification of Key Genes and Pathways for Alzheimer's Disease
Biophys Rep 2019, 5(2):98–109 https://doi.org/10.1007/s41048-019-0086-2 Biophysics Reports RESEARCH ARTICLE Identification of key genes and pathways for Alzheimer’s disease via combined analysis of genome-wide expression profiling in the hippocampus Mengsi Wu1,2, Kechi Fang1, Weixiao Wang1,2, Wei Lin1,2, Liyuan Guo1,2&, Jing Wang1,2& 1 CAS Key Laboratory of Mental Health, Institute of Psychology, Chinese Academy of Sciences, Beijing 100101, China 2 Department of Psychology, University of Chinese Academy of Sciences, Beijing 10049, China Received: 8 August 2018 / Accepted: 17 January 2019 / Published online: 20 April 2019 Abstract In this study, combined analysis of expression profiling in the hippocampus of 76 patients with Alz- heimer’s disease (AD) and 40 healthy controls was performed. The effects of covariates (including age, gender, postmortem interval, and batch effect) were controlled, and differentially expressed genes (DEGs) were identified using a linear mixed-effects model. To explore the biological processes, func- tional pathway enrichment and protein–protein interaction (PPI) network analyses were performed on the DEGs. The extended genes with PPI to the DEGs were obtained. Finally, the DEGs and the extended genes were ranked using the convergent functional genomics method. Eighty DEGs with q \ 0.1, including 67 downregulated and 13 upregulated genes, were identified. In the pathway enrichment analysis, the 80 DEGs were significantly enriched in one Kyoto Encyclopedia of Genes and Genomes (KEGG) pathway, GABAergic synapses, and 22 Gene Ontology terms. These genes were mainly involved in neuron, synaptic signaling and transmission, and vesicle metabolism. These processes are all linked to the pathological features of AD, demonstrating that the GABAergic system, neurons, and synaptic function might be affected in AD. -
Novel Targets of Apparently Idiopathic Male Infertility
International Journal of Molecular Sciences Review Molecular Biology of Spermatogenesis: Novel Targets of Apparently Idiopathic Male Infertility Rossella Cannarella * , Rosita A. Condorelli , Laura M. Mongioì, Sandro La Vignera * and Aldo E. Calogero Department of Clinical and Experimental Medicine, University of Catania, 95123 Catania, Italy; [email protected] (R.A.C.); [email protected] (L.M.M.); [email protected] (A.E.C.) * Correspondence: [email protected] (R.C.); [email protected] (S.L.V.) Received: 8 February 2020; Accepted: 2 March 2020; Published: 3 March 2020 Abstract: Male infertility affects half of infertile couples and, currently, a relevant percentage of cases of male infertility is considered as idiopathic. Although the male contribution to human fertilization has traditionally been restricted to sperm DNA, current evidence suggest that a relevant number of sperm transcripts and proteins are involved in acrosome reactions, sperm-oocyte fusion and, once released into the oocyte, embryo growth and development. The aim of this review is to provide updated and comprehensive insight into the molecular biology of spermatogenesis, including evidence on spermatogenetic failure and underlining the role of the sperm-carried molecular factors involved in oocyte fertilization and embryo growth. This represents the first step in the identification of new possible diagnostic and, possibly, therapeutic markers in the field of apparently idiopathic male infertility. Keywords: spermatogenetic failure; embryo growth; male infertility; spermatogenesis; recurrent pregnancy loss; sperm proteome; DNA fragmentation; sperm transcriptome 1. Introduction Infertility is a widespread condition in industrialized countries, affecting up to 15% of couples of childbearing age [1]. It is defined as the inability to achieve conception after 1–2 years of unprotected sexual intercourse [2]. -
Genome-Wide Insights on Gastrointestinal Nematode
www.nature.com/scientificreports OPEN Genome‑wide insights on gastrointestinal nematode resistance in autochthonous Tunisian sheep A. M. Ahbara1,2, M. Rouatbi3,4, M. Gharbi3,4, M. Rekik1, A. Haile1, B. Rischkowsky1 & J. M. Mwacharo1,5* Gastrointestinal nematode (GIN) infections have negative impacts on animal health, welfare and production. Information from molecular studies can highlight the underlying genetic mechanisms that enhance host resistance to GIN. However, such information often lacks for traditionally managed indigenous livestock. Here, we analysed 600 K single nucleotide polymorphism genotypes of GIN infected and non‑infected traditionally managed autochthonous Tunisian sheep grazing communal natural pastures. Population structure analysis did not fnd genetic diferentiation that is consistent with infection status. However, by contrasting the infected versus non‑infected cohorts using ROH, LR‑GWAS, FST and XP‑EHH, we identifed 35 candidate regions that overlapped between at least two methods. Nineteen regions harboured QTLs for parasite resistance, immune capacity and disease susceptibility and, ten regions harboured QTLs for production (growth) and meat and carcass (fatness and anatomy) traits. The analysis also revealed candidate regions spanning genes enhancing innate immune defence (SLC22A4, SLC22A5, IL‑4, IL‑13), intestinal wound healing/repair (IL‑4, VIL1, CXCR1, CXCR2) and GIN expulsion (IL‑4, IL‑13). Our results suggest that traditionally managed indigenous sheep have evolved multiple strategies that evoke and enhance GIN resistance and developmental stability. They confrm the importance of obtaining information from indigenous sheep to investigate genomic regions of functional signifcance in understanding the architecture of GIN resistance. Small ruminants (sheep and goats) make immense socio-economic and cultural contributions across the globe. -
SEPT12 Orchestrates the Formation of Mammalian Sperm Annulus By
ß 2015. Published by The Company of Biologists Ltd | Journal of Cell Science (2015) 128, 923–934 doi:10.1242/jcs.158998 RESEARCH ARTICLE SEPT12 orchestrates the formation of mammalian sperm annulus by organizing core octameric complexes with other SEPT proteins Yung-Che Kuo1,2,*, Yi-Ru Shen3,*, Hau-Inh Chen4,5, Ying-Hung Lin6, Ya-Yun Wang3, Yet-Ran Chen7, Chia-Yih Wang2,8 and Pao-Lin Kuo2,3,4,` ABSTRACT pathways involved in this process have been elucidated in the past decade, the etiologies of most cases of male infertility remain Male infertility has become a worldwide health problem, but the unclear. etiologies of most cases are still unknown. SEPT12, a GTP-binding SEPT12, a GTP-binding protein with GTPase activity, has been protein, is involved in male fertility. Two SEPT12 mutations T89M D197N implicated in sperm morphogenesis and male infertility. Mouse (SEPT12 and SEPT12 ) have been identified in infertile Sept12 (Mm.87382) expression is restricted to spermatogenic cells men who have a defective sperm annulus with a bent tail. The (Hong et al., 2005; Lin et al., 2009). Sept12+/2 chimeric mice function of SEPT12 in the sperm annulus is still unclear. Here, we (generated by gene targeting) are sterile with various sperm found that SEPT12 formed a filamentous structure with SEPT7, defects, including a bent tail and maturation arrest at the round SEPT 6, SEPT2 and SEPT4 at the sperm annulus. The SEPT12- spermatid stage (Lin et al., 2009). In addition, two SEPT12 based septin core complex was assembled as octameric filaments mutations (SEPT12T89M and SEPT12D197N) and one sequence comprising the SEPT proteins 12-7-6-2-2-6-7-12 or 12-7-6-4-4-6-7- variant (c.474G.A) have been identified in infertile men with 12.