Unrecognized Biodiversity in a World's Hotspot: Three New Species Of
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Deterministic Shifts in Molecular Evolution Correlate with Convergence to Annualism in Killifishes
bioRxiv preprint doi: https://doi.org/10.1101/2021.08.09.455723; this version posted August 10, 2021. The copyright holder for this preprint (which was not certified by peer review) is the author/funder. All rights reserved. No reuse allowed without permission. Deterministic shifts in molecular evolution correlate with convergence to annualism in killifishes Andrew W. Thompson1,2, Amanda C. Black3, Yu Huang4,5,6 Qiong Shi4,5 Andrew I. Furness7, Ingo, Braasch1,2, Federico G. Hoffmann3, and Guillermo Ortí6 1Department of Integrative Biology, Michigan State University, East Lansing, Michigan 48823, USA. 2Ecology, Evolution & Behavior Program, Michigan State University, East Lansing, MI, USA. 3Department of Biochemistry, Molecular Biology, Entomology, & Plant Pathology, Mississippi State University, Starkville, MS 39759, USA. 4Shenzhen Key Lab of Marine Genomics, Guangdong Provincial Key Lab of Molecular Breeding in Marine Economic Animals, BGI Marine, Shenzhen 518083, China. 5BGI Education Center, University of Chinese Academy of Sciences, Shenzhen 518083, China. 6Department of Biological Sciences, The George Washington University, Washington, DC 20052, USA. 7Department of Biological and Marine Sciences, University of Hull, UK. Corresponding author: Andrew W. Thompson, [email protected] bioRxiv preprint doi: https://doi.org/10.1101/2021.08.09.455723; this version posted August 10, 2021. The copyright holder for this preprint (which was not certified by peer review) is the author/funder. All rights reserved. No reuse allowed without permission. Abstract: The repeated evolution of novel life histories correlating with ecological variables offer opportunities to test scenarios of convergence and determinism in genetic, developmental, and metabolic features. Here we leverage the diversity of aplocheiloid killifishes, a clade of teleost fishes that contains over 750 species on three continents. -
Three New Species of the Killifish Genus Melanorivulus from The
A peer-reviewed open-access journal ZooKeysThree 645: 51–70 new (2017) species of the killifish genus Melanorivulus from the central Brazilian Cerrado... 51 doi: 10.3897/zookeys.645.10920 RESEARCH ARTICLE http://zookeys.pensoft.net Launched to accelerate biodiversity research Three new species of the killifish genus Melanorivulus from the central Brazilian Cerrado savanna (Cyprinodontiformes, Aplocheilidae) Wilson J. E. M. Costa1 1 Laboratory of Systematics and Evolution of Teleost Fishes, Institute of Biology, Federal University of Rio de Janeiro, Caixa Postal 68049, CEP 21941-971, Rio de Janeiro, Brazil Corresponding author: Wilson J. E. M. Costa ([email protected]) Academic editor: J. Maldonado | Received 25 October 2016 | Accepted 13 December 2016 | Published 12 January 2017 http://zoobank.org/1CA42A09-9E5F-4CA7-B9D4-5D0557F64BDB Citation: Costa WJEM (2017) Three new species of the killifish genus Melanorivulus from the central Brazilian Cerrado savanna (Cyprinodontiformes, Aplocheilidae). ZooKeys 645: 51–70. https://doi.org/10.3897/zookeys.645.10920 Abstract Three new species are described from the Neotropical region comprising the Cerrado savannas of the cen- tral Brazilian plateaus, which is among the most important biodiversity centres in the world. These species are considered closely related to M. dapazi from the same region, with which they share the presence of a rudimentary interarcual cartilage and a dark reddish brown distal margin on the male anal fin. The group comprising M. dapazi and the three new species is here named as the M. dapazi species group. Melanori- vulus ignescens sp. n., from the upper Rio Araguaia basin, is distinguished from all other species of the M. -
Effects of Deforestation on Headwater Stream Fish Assemblages in the Upper Xingu River Basin, Southeastern Amazonia
Neotropical Ichthyology, 17(1): e180099, 2019 Journal homepage: www.scielo.br/ni DOI: 10.1590/1982-0224-20180099 Published online: 31 January 2019 (ISSN 1982-0224) Copyright © 2019 Sociedade Brasileira de Ictiologia Printed: 30 March 2019 (ISSN 1679-6225) Original article Effects of deforestation on headwater stream fish assemblages in the Upper Xingu River Basin, Southeastern Amazonia Paulo Ilha1,2, Sergio Rosso1 and Luis Schiesari3 The expansion of the Amazonian agricultural frontier represents the most extensive land cover change in the world, detrimentally affecting stream ecosystems which collectively harbor the greatest diversity of freshwater fish on the planet. Our goal was to test the hypotheses that deforestation affects the abundance, richness, and taxonomic structure of headwater stream fish assemblages in the Upper Xingu River Basin, in Southeastern Amazonia. Standardized sampling surveys in replicated first order streams demonstrated that deforestation strongly influences fish assemblage structure. Deforested stream reaches had twice the fish abundance than reference stream reaches in primary forests. These differences in assemblage structure were largely driven by increases in the abundance of a handful of species, as no influence of deforestation on species richness was observed. Stream canopy cover was the strongest predictor of assemblage structure, possibly by a combination of direct and indirect effects on the provision of forest detritus, food resources, channel morphology, and micro-climate regulation. Given the dynamic nature of change in land cover and use in the region, this article is an important contribution to the understanding of the effects of deforestation on Amazonian stream fish, and their conservation. Keywords: Arc of Deforestation, Canopy, Land use, Ichthyofauna, Vegetation cover. -
Cyprinodontiformes: Rivulidae) from the Xingu River Drainage, Brazilian Amazon
64 (2): 193 – 197 © Senckenberg Gesellschaft für Naturforschung, 2014. 25.7.2014 A new miniature killifish of the genus Melanorivulus (Cyprinodontiformes: Rivulidae) from the Xingu river drainage, Brazilian Amazon Wilson J. E. M. Costa, Pedro F. Amorim & Pedro H. N. Bragança Laboratory of Systematics and Evolution of Teleost Fishes, Institute of Biology, Federal University of Rio de Janeiro, Caixa Postal 68049, CEP 21944-970, Rio de Janeiro, Brasil; wcosta(at)acd.ufrj.br, pedro_f_a(at)hotmail.com, pedrobra88(at)gmail.com Accepted 25.v.2014. Published online at www.senckenberg.de/vertebrate-zoology on 15.vii.2014. Abstract Melanorivulus rubroreticulatus, new species, is described on the basis of material collected in the lower section of the Xingu river drain- age, Brazilian Amazon. It is a member of a group endemic to the region encompassing the southern Amazonas river tributaries and the Parnaíba river basin. The new species is distinguished from other congeners of this group by the presence of broad red bars on the caudal fin in males, bars often interconnected to form reticulations, and short red bars contrasting with intense light blue ground colour on the anal-fin base. It represents the northern-most record for the group, besides being the only species occurring in the Amazon rain forest and possibly is also the smallest one, barely surpassing 25 mm of standard length. Key words Amazon forest, Biodiversity, Killifish, Systematics, Taxonomy. Introduction Melanorivulus COSTA, 2006 is a killifish genus compris- ron-like pattern with vertex below body midline. Here ing over 40 small species occurring in a vast portion of we describe a new species of this group collected in the tropical South America (COSTA, 2011). -
Atlantirivulus, a New Subgenus of the Killifish Genus Rivulus from The
Vertebrate Zoology 58 (1) 2008 45 45 – 48 © Museum für Tierkunde Dresden, ISSN 1864-5755, 22.05.2008 Atlantirivulus, a new subgenus of the killifi sh genus Rivulus from the eastern Brazilian coastal plains (Teleostei: Cyprinodontiformes: Rivulidae) WILSON J. E. M. COSTA Laboratório de Ictiologia Geral e Aplicada, Departamento de Zoologia, Universidade Federal do Rio de Janeiro, Caixa Postal 68049, CEP 21944-970, Rio de Janeiro, RJ, Brazil wcosta(at)acd.ufrj.br Received on November 16, 2007, accepted on February 18, 2008. Published online at www.vertebrate-zoology.de on May 12, 2008. > Abstract Atlantirivulus, new subgenus of Rivulus POEY, is described to include a well defi ned, geographically isolated species assem- blage, endemic to eastern Brazil, formerly known as the Rivulus santensis species group. It includes eight species, all inhab- iting Atlantic forest habitats: R. santensis KÖHLER, the type species of the new subgenus, R. depressus COSTA, R. haraldsiolii BERKENKAMP, R. janeiroensis COSTA, R. lazzarotoi COSTA, R. luelingi SEEGERS, R. nudiventris COSTA & BRASIL, and R. simpli- cis COSTA. Atlantirivulus is diagnosed by a curved ventral process of angulo-articular and infraorbital neuromasts numerous, arranged in a zigzag pattern, morphological features that are unique among aplocheiloid fi shes. > Resumen Atlantirivulus, novo subgênero de Rivulus POEY, é descrito para incluir um agrupamento de espécies bem defi nido e isolado geografi camente, endêmico do leste do Brasil, anteriormente conhecido como grupo de espécies Rivulus santensis. Ele inclui oito espécies, todas vivendo em ambientes da Mata Atlântica: R. santensis KÖHLER, a espécie tipo do novo subgênero, R. depressus COSTA, R. haraldsiolii BERKENKAMP, R. -
New Species Discoveries in the Amazon 2014-15
WORKINGWORKING TOGETHERTOGETHER TO TO SHARE SCIENTIFICSCIENTIFIC DISCOVERIESDISCOVERIES UPDATE AND COMPILATION OF THE LIST UNTOLD TREASURES: NEW SPECIES DISCOVERIES IN THE AMAZON 2014-15 WWF is one of the world’s largest and most experienced independent conservation organisations, WWF Living Amazon Initiative Instituto de Desenvolvimento Sustentável with over five million supporters and a global network active in more than 100 countries. WWF’s Mamirauá (Mamirauá Institute of Leader mission is to stop the degradation of the planet’s natural environment and to build a future Sustainable Development) Sandra Charity in which humans live in harmony with nature, by conserving the world’s biological diversity, General director ensuring that the use of renewable natural resources is sustainable, and promoting the reduction Communication coordinator Helder Lima de Queiroz of pollution and wasteful consumption. Denise Oliveira Administrative director Consultant in communication WWF-Brazil is a Brazilian NGO, part of an international network, and committed to the Joyce de Souza conservation of nature within a Brazilian social and economic context, seeking to strengthen Mariana Gutiérrez the environmental movement and to engage society in nature conservation. In August 2016, the Technical scientific director organization celebrated 20 years of conservation work in the country. WWF Amazon regional coordination João Valsecchi do Amaral Management and development director The Instituto de Desenvolvimento Sustentável Mamirauá (IDSM – Mamirauá Coordinator Isabel Soares de Sousa Institute for Sustainable Development) was established in April 1999. It is a civil society Tarsicio Granizo organization that is supported and supervised by the Ministry of Science, Technology, Innovation, and Communications, and is one of Brazil’s major research centres. -
Atlantirivulus Santensis Köhler, 1906 (Rivulidae, Cyprinodontiformes)
RESSALVA Atendendo solicitação do(a) autor(a), o texto completo desta dissertação será disponibilizado somente a partir de 25/02/2021. UNIVERSIDADE ESTADUAL PAULISTA INSTITUTO DE BIOCIÊNCIAS DE BOTUCATU Departamento de Morfologia Laboratório de Biologia e Genética de Peixes Eric Venturini Ywamoto Revisão taxonômica e biogeografia de Atlantirivulus santensis Köhler, 1906 (Rivulidae, Cyprinodontiformes) Mestrando: Eric Venturini Ywamoto Orientador: Prof. Dr. Claudio de Oliveira Botucatu 2019 UNIVERSIDADE ESTADUAL PAULISTA INSTITUTO DE BIOCIÊNCIAS DE BOTUCATU CURSO DE PÓS-GRADUAÇÃO EM CIÊNCIAS BIOLÓGICAS: ÁREA DE CONCENTRAÇÃO: GENÉTICA Eric Venturini Ywamoto Revisão taxonômica e biogeografia de Atlantirivulus santensis Köhler, 1906 (Rivulidae, Cyprinodontiformes) Dissertação apresentada ao Programa de Pós-Graduação em Ciências Biológicas (Genética) - Instituto de Biociências, UNESP, campus de Botucatu, para obtenção do título de Mestre em Ciências Biológicas (Genética). Orientador: Prof. Dr. Claudio de Oliveira Botucatu-SP 2019 Resumo Atlantirivulus santensis é amplamente distribuída ao longo das drenagens costeiras de São Paulo, Brasil. Algumas evidências de variação morfológica dentro dessa espécie sugerem que possam existir espécies novas que ainda não tenham sido descritas. Nesse sentido, o objetivo do presente estudo é verificar se existem diferentes linhagens de A. santesis utilizando a ferramenta do DNA Barcoding, realizar a revisão taxonômica de A. santesis através de caracteres morfológicos e estabelecer os limites de distribuição desta espécie com o intuito de contribuir para futuros estudos de sistemática dos rivulídeos. Foram analisadas 68 sequências parciais da região Citocromo c Oxidase I do DNA mitocondrial (com aproximadamente 550 pares de bases) de espécimes de A. santensis (Ubatuba, Maresias, Bertioga, São Paulo, Santos, Mongaguá, Pedro de Toledo, Itanhaém e Peruíbe), além de Atlantirivulus simplicis encontrada no limite norte (Paraty-RJ) da distribuição de A. -
Three New Species of the Killifish Genus Melanorivulus from the Rio Paraná Basin, Central Brazilian Cerrado
Zoosyst. Evol. 94 (1) 2018, 17–27 | DOI 10.3897/zse.94.21321 museum für naturkunde Three new species of the killifish genusMelanorivulus from the Rio Paraná Basin, central Brazilian Cerrado (Cyprinodontiformes, Aplocheilidae) Wilson J.E.M. Costa1 1 Laboratory of Systematics and Evolution of Teleost Fishes, Institute of Biology, Federal University of Rio de Janeiro, Caixa Postal 68049, CEP 21941-971, Rio de Janeiro, Brazil http://zoobank.org/548D8BB7-0CA6-41ED-ACA6-5BA139A60516 Corresponding author: Wilson J. E. M. Costa ([email protected]) Abstract Received 29 September 2017 Three new species of Melanorivulus are described from the upper and middle Rio Paraná Accepted 14 November 2017 Basin, central Brazilian Cerrado. These species are members of the M. pictus species group, Published 2 January 2018 endemic to central Brazilian plateaus and adjacent areas, and are easily diagnosed by colour pattern characters, but their relationships with other congeners of the group are still uncer- Academic editor: tain. Melanorivulus proximus sp. n., from the middle Rio Aporé drainage, and M. nigromar- Peter Bartsch ginatus sp. n., from the Rio Corrente drainage, are possibly more closely related to other species endemic to streams draining the slopes of the Caiapó range, whereas M. linearis Key Words sp. n., from the upper Rio Pardo drainage, middle Rio Paraná Basin, is considered more closely related to M. egens, a species also endemic to this part of the Basin. This study Biodiversity hotspot corroborates the high diversity of species of Melanorivulus in the central Brazilian Cerrado colour patterns plateaus repeatedly reported in previous studies, indicating once more that different species conservation are often found restricted to short segments of the same river drainage. -
Four New Species of the Genus Atlantirivulus (Cyprinodontiformes: Rivulidae) from the Brazilian Atlantic Forest
64 (1): 9 – 21 © Senckenberg Gesellschaft für Naturforschung, 2014. 16.5.2014 Four new species of the genus Atlantirivulus (Cyprinodontiformes: Rivulidae) from the Brazilian Atlantic Forest Wilson J. E. M. Costa Laboratório de Sistemática e Evolução de Peixes Teleósteos, Instituto de Biologia, Universidade Federal do Rio de Janeiro, Caixa Postal 68049, CEP 21944 – 970, Rio de Janeiro, Brasil; wcosta(at)acd.ufrj.br Accepted 17.i.2014. Published online at www.senckenberg.de/vertebrate-zoology on 30.iv.2014. Abstract Material obtained from recent collections was used to revise taxonomy of the genus Atlantirivulus in the coastal basins of south – eastern Brazil, making possible to recognise four new species: Atlantirivulus maricensis, new species, from the rivers drainages connected to the Maricá lagoon system; Atlantirivulus guanabarensis, new species, from river drainages flowing into the Guanabara bay; Atlantirivulus paranaguensis, new species, from the river basins of the plain area adjacent to the Paranaguá bay; and Atlantirivulus ribeirensis, new spe- cies, from the Ribeira de Iguape river basin. All the new species herein described are members of the A. santensis species group, diagnosed by the lateral line being divided in two sections. Atlantirivulus maricensis is considered to be closely related to A. janeiroensis, A. jurubati bensis and A. nudiventris by all sharing a horizontally elongated female caudal spot, whereas A. guanabarensis seems to be more closely related to A. lazzarotoi and A. simplicis, by all having a high number of neuromasts in the section of infraorbital series around orbit, and A. paranaguensis seems to be more closely related to A. santensis by both having the anal and caudal fin margin highly black pigmented in males; relationships of A. -
The Evolution of Diapause in Rivulus (Laimosemion)
Zoological Journal of the Linnean Society, 2018, 184, 773–790. With 7 figures. The evolution of diapause in Rivulus (Laimosemion) Downloaded from https://academic.oup.com/zoolinnean/article-abstract/184/3/773/4992590 by University of Hull user on 28 October 2018 ANDREW I. FURNESS1*, DAVID N. REZNICK2, ANDREY TATARENKOV1 AND JOHN C. AVISE1 1Department of Ecology and Evolutionary Biology, University of California, Irvine, Irvine, CA 92697, USA 2Department of Biology, University of California, Riverside, Riverside, CA 92521, USA Received 3 May 2017; revised 21 January 2018; accepted for publication 3 March 2018 Annual killifish that are adapted to life in aquatic habitat that dries seasonally have evolved desiccation-resistant eggs capable of undergoing diapause, i.e. developmental arrest, at specific stages during embryology. Although noted for their remarkable ability to live at the land–water interface, species in the genus Rivulus are considered to be non- annual killifish that exhibit typical teleost developmental patterns and no embryonic diapause. Here, we combine a molecular phylogeny with an embryological study in order to demonstrate an independent origin of mid-embryonic diapause within a clade of Rivulus (subgenus Laimosemion) that inhabits small streams or savannah pools. We also observed that some of these species exhibit a short dispersed cell phase separating epiboly and the formation of the embryo axis, which is a feature of development observed only in annual killifish. Lastly, we incubated embryos of Laimosemion species and outgroup taxa in both water and peat moss and observed that on peat moss the embryos of all species are capable of delaying hatching for > 10 days, but when water incubated there are significant differences among species in the duration of this delay before hatching. -
A New Miniature Killifish of the Genus Melanorivulus (Cyprinodontiformes: Rivulidae) from the Xingu River Drainage, Brazilian Amazon
64 (2): 193 – 197 © Senckenberg Gesellschaft für Naturforschung, 2014. 25.7.2014 A new miniature killifish of the genus Melanorivulus (Cyprinodontiformes: Rivulidae) from the Xingu river drainage, Brazilian Amazon Wilson J. E. M. Costa, Pedro F. Amorim & Pedro H. N. Bragança Laboratory of Systematics and Evolution of Teleost Fishes, Institute of Biology, Federal University of Rio de Janeiro, Caixa Postal 68049, CEP 21944-970, Rio de Janeiro, Brasil; wcosta(at)acd.ufrj.br, pedro_f_a(at)hotmail.com, pedrobra88(at)gmail.com Accepted 25.v.2014. Published online at www.senckenberg.de/vertebrate-zoology on 15.vii.2014. Abstract Melanorivulus rubroreticulatus, new species, is described on the basis of material collected in the lower section of the Xingu river drain- age, Brazilian Amazon. It is a member of a group endemic to the region encompassing the southern Amazonas river tributaries and the Parnaíba river basin. The new species is distinguished from other congeners of this group by the presence of broad red bars on the caudal ¿n in males, bars often interconnected to form reticulations, and short red bars contrasting with intense light blue ground colour on the anal-¿n base. It represents the northern-most record for the group, besides being the only species occurring in the Amazon rain forest and possibly is also the smallest one, barely surpassing 25 mm of standard length. Key words Amazon forest, Biodiversity, .illi¿sh, 6ystematics, Ta[onomy. Introduction Melanorivulus COSTA, 2 is a Nilli¿sh genus compris- ron-like pattern with verte[ below body midline. Here ing over 40 small species occurring in a vast portion of we describe a new species of this group collected in the tropical 6outh America (COSTA, 2011). -
Rivulus Berovidesi, a New Killifish Species (Teleostei: Rivulidae) from Western Cuba
Zootaxa 3949 (2): 289–296 ISSN 1175-5326 (print edition) www.mapress.com/zootaxa/ Article ZOOTAXA Copyright © 2015 Magnolia Press ISSN 1175-5334 (online edition) http://dx.doi.org/10.11646/zootaxa.3949.2.9 http://zoobank.org/urn:lsid:zoobank.org:pub:6EE53509-2ED0-4466-986B-A9DA84413CB3 Rivulus berovidesi, a new killifish species (Teleostei: Rivulidae) from western Cuba RODET RODRIGUEZ SILVA Instituto de Ecología y Sistemática. Carretera Varona 11835 e/ Oriente y Lindero, La Habana 19, CP 11900, Calabazar, Boyeros, La Habana, Cuba. E-mail: [email protected] and [email protected] Abstract Rivulus berovidesi, a new killifish species, is described from a small stream in Sierra de Cajalbana, northwestern Cuba. It is readily distinguished from Rivulus cylindraceus Poey by the combination of an exclusive color pattern and meristic characters such as a d-type frontal scalation pattern (versus e-type pattern in Rivulus cylindraceus). The current diag- nosis of Rivulus berovidesi based on chromatic, morphological and meristic characters is consistent with a recent mo- lecular analysis of this genus in Cuba. Key words: Rivulus berovidesi, frontal scalation pattern, killifish, meristic characters Introduction The killifish genus Rivulus Poey, is the most speciose genus of the family Rivulidae including more than 125 valid species occurring in a great diversity of wetlands (Bussing 2002; Costa 2004, 2005; Valdesalici & Schindler 2011). However, based on recent molecular phylogenies, other authors consider that the genus Rivulus (sensu stricto) comprises less than five valid species (Hrbek et al. 2004; Costa 2011; Eschmeyer 2014). This group is represented by small oviparous fish (about 20-120 mm standard length) with sexual dimorphism characterized, in most cases, by the presence of an ocellated spot on the caudal fin of females (Ghedotti & Wiley 2002).