Association of Genetic Polymorphisms in SOD2, SOD3, GPX3, and GSTT1
Total Page:16
File Type:pdf, Size:1020Kb
Load more
Recommended publications
-
A Computational Approach for Defining a Signature of Β-Cell Golgi Stress in Diabetes Mellitus
Page 1 of 781 Diabetes A Computational Approach for Defining a Signature of β-Cell Golgi Stress in Diabetes Mellitus Robert N. Bone1,6,7, Olufunmilola Oyebamiji2, Sayali Talware2, Sharmila Selvaraj2, Preethi Krishnan3,6, Farooq Syed1,6,7, Huanmei Wu2, Carmella Evans-Molina 1,3,4,5,6,7,8* Departments of 1Pediatrics, 3Medicine, 4Anatomy, Cell Biology & Physiology, 5Biochemistry & Molecular Biology, the 6Center for Diabetes & Metabolic Diseases, and the 7Herman B. Wells Center for Pediatric Research, Indiana University School of Medicine, Indianapolis, IN 46202; 2Department of BioHealth Informatics, Indiana University-Purdue University Indianapolis, Indianapolis, IN, 46202; 8Roudebush VA Medical Center, Indianapolis, IN 46202. *Corresponding Author(s): Carmella Evans-Molina, MD, PhD ([email protected]) Indiana University School of Medicine, 635 Barnhill Drive, MS 2031A, Indianapolis, IN 46202, Telephone: (317) 274-4145, Fax (317) 274-4107 Running Title: Golgi Stress Response in Diabetes Word Count: 4358 Number of Figures: 6 Keywords: Golgi apparatus stress, Islets, β cell, Type 1 diabetes, Type 2 diabetes 1 Diabetes Publish Ahead of Print, published online August 20, 2020 Diabetes Page 2 of 781 ABSTRACT The Golgi apparatus (GA) is an important site of insulin processing and granule maturation, but whether GA organelle dysfunction and GA stress are present in the diabetic β-cell has not been tested. We utilized an informatics-based approach to develop a transcriptional signature of β-cell GA stress using existing RNA sequencing and microarray datasets generated using human islets from donors with diabetes and islets where type 1(T1D) and type 2 diabetes (T2D) had been modeled ex vivo. To narrow our results to GA-specific genes, we applied a filter set of 1,030 genes accepted as GA associated. -
Timing of Antioxidant Gene Therapy: Implications for Treating Dry AMD
Biochemistry and Molecular Biology Timing of Antioxidant Gene Therapy: Implications for Treating Dry AMD Manas R. Biswal,1 Pingyang Han,1 Ping Zhu,2 Zhaoyang Wang,3 Hong Li,1 Cristhian J. Ildefonso,2 and Alfred S. Lewin1 1Department of Molecular Genetics and Microbiology, University of Florida College of Medicine, Gainesville, Florida, United States 2Department of Ophthalmology, University of Florida College of Medicine, Gainesville, Florida, United States 3Department of Ophthalmology, Shanghai Ninth People’s Hospital, Shanghai Jiaotong University School of Medicine, Huangpu District, Shanghai, China Correspondence: Manas R. Biswal, PURPOSE. To investigate whether antioxidant gene therapy protects the structure and function Department of Molecular Genetics of retina in a murine model of RPE atrophy, and to determine whether antioxidant gene and Microbiology, University of Flor- therapy can prevent degeneration once it has begun. ida College of Medicine, 1200 New- ell Drive, Gainesville, FL 32610, USA; METHODS. We induced mitochondrial oxidative stress in RPE by conditional deletion of Sod2, Biswal@ufl.edu. the gene for manganese superoxide dismutase (MnSOD). These mice exhibited localized Submitted: December 9, 2016 atrophy of the RPE and overlying photoreceptors. We restored Sod2 to the RPE of one eye Accepted: January 23, 2017 using adeno-associated virus (AAV) by subretinal injection at an early (6 weeks) and a late Citation: Biswal MR, Han P, Zhu P, et stage (6 months), injecting the other eye with an AAV vector expressing green fluorescent al. Timing of antioxidant gene thera- protein (GFP). Retinal degeneration was monitored over a period of 9 months by py: implications for treating dry AMD. electroretinography (ERG) and spectral-domain optical coherence tomography (SD-OCT). -
A Label-Free Cellular Proteomics Approach to Decipher the Antifungal Action of Dimiq, a Potent Indolo[2,3- B]Quinoline Agent, Against Candida Albicans Biofilms
A Label-Free Cellular Proteomics Approach to Decipher the Antifungal Action of DiMIQ, a Potent Indolo[2,3- b]Quinoline Agent, against Candida albicans Biofilms Robert Zarnowski 1,2*, Anna Jaromin 3*, Agnieszka Zagórska 4, Eddie G. Dominguez 1,2, Katarzyna Sidoryk 5, Jerzy Gubernator 3 and David R. Andes 1,2 1 Department of Medicine, School of Medicine & Public Health, University of Wisconsin-Madison, Madison, WI 53706, USA; [email protected] (E.G.D.); [email protected] (D.R.A.) 2 Department of Medical Microbiology, School of Medicine & Public Health, University of Wisconsin-Madison, Madison, WI 53706, USA 3 Department of Lipids and Liposomes, Faculty of Biotechnology, University of Wroclaw, 50-383 Wroclaw, Poland; [email protected] 4 Department of Medicinal Chemistry, Jagiellonian University Medical College, 30-688 Cracow, Poland; [email protected] 5 Department of Pharmacy, Cosmetic Chemicals and Biotechnology, Team of Chemistry, Łukasiewicz Research Network-Industrial Chemistry Institute, 01-793 Warsaw, Poland; [email protected] * Correspondence: [email protected] (R.Z.); [email protected] (A.J.); Tel.: +1-608-265-8578 (R.Z.); +48-71-3756203 (A.J.) Label-Free Cellular Proteomics of Candida albicans biofilms treated with DiMIQ Identified Proteins Accession # Alternate ID Gene names (ORF ) WT DIMIQ Z SCORE Proteins induced by DiMIQ Arginase (EC 3.5.3.1) A0A1D8PP00 CAR1 CAALFM_C504490CA 0.000 6.648 drug induced Glucan 1,3-beta-glucosidase BGL2 (EC 3.2.1.58) (Exo-1Q5AMT2 BGL2 CAALFM_C402250CA -
Overexpression of Superoxide Dismutase 3 Gene Blocks High-Fat Diet-Induced Obesity, Fatty Liver and Insulin Resistance
Gene Therapy (2014) 21, 840–848 © 2014 Macmillan Publishers Limited All rights reserved 0969-7128/14 www.nature.com/gt ORIGINAL ARTICLE Overexpression of superoxide dismutase 3 gene blocks high-fat diet-induced obesity, fatty liver and insulin resistance RCui1,2, M Gao2,SQu1 and D Liu2 Oxidative stress has an important role in the development of obesity and obesity-associated metabolic disorders. As an endogenous antioxidant enzyme, superoxide dismutase 3 (SOD3) has the potential to affect diet-induced obesity and obesity- associated complications. In the current work, we overexpressed SOD3 in C57BL/6 mice fed a high-fat diet (HFD) to study its effect on HFD-induced obesity, fatty liver and insulin resistance. We demonstrated that the Sod3 gene transfer blocked HFD-induced obesity, fatty liver and insulin resistance. Real-time PCR analysis of adipose and liver tissues revealed that overexpression of the Sod3 gene suppressed expression of pro-inflammatory genes in adipose tissue including F4/80, Tnfα, Cd11c, Mcp1 and Il6, and increased expression of anti-inflammatory genes such as adiponectin. In the liver, high levels of SOD3 activity in animals enhanced expression of the genes responsible for energy expenditure including Cpt1α, Cpt1β, Pgc1α, Pgc1β and Ucp2. These results suggest that overexpression of the Sod3 gene through gene transfer is an effective approach in preventing diet-induced obesity and obesity-associated complications. Gene Therapy (2014) 21, 840–848; doi:10.1038/gt.2014.64; published online 17 July 2014 INTRODUCTION hydrodynamic Sod3 gene transfer blocked HFD-induced weight Obesity is a causative factor in the development of several gain, insulin resistance and alleviated fatty liver. -
Review on Parkinson's Disease, a Neurodegenerative Disorder And
ISSN: 2349-8889 International Journal for Research in Applied Sciences and Biotechnology Volume-8, Issue-4 (July 2021) www.ijrasb.com https://doi.org/10.31033/ijrasb.8.4.11 Review on Parkinson’s Disease, a Neurodegenerative Disorder and The Role of Ceruloplasmin Protein in It Ajay Chaudhary1, Noopur Khare2, Yamini Dixit3 and Abhimanyu Kumar Jha4 1Department of Biotechnology, Faculty of Life Sciences, Institute of Applied Medicines and Research, Ghaziabad, Uttar Pradesh, INDIA 2Shri Ramswaroop Memorial University, Barbanki, Uttar Pradesh, INDIA 3Department of Biotechnology, Faculty of Life Sciences, Institute of Applied Medicines and Research, Ghaziabad, Uttar Pradesh, INDIA 4Department of Biotechnology, Faculty of Life Sciences, Institute of Applied Medicines and Research, Ghaziabad, Uttar Pradesh, INDIA 3Corresponding Author: [email protected] ABSTRACT neurodegenerative disease [Gitler et al., 2017]. Increasing Parkinson’s disease (PD), a neurodegenerative Age is the one of the most common risk factor associated disease is becoming major health concern mainly for elder with neurodegenerative disease, especially in case of people of age over 60 years. The main cause of PD is Alzheimer’s and Parkinson’s disease [Przedborski et al., permanent loss/death of dopaminergic nerve cells present in 2003]. In this study, main focus will be the cause of PD brain part called substantia nigra, which is responsible for and ceruloplasmin role in it. dopamine synthesis. MAO-B, monoamine oxidase B, regulates dopamine metabolism and increased activity of Parkinson’s disease MAO-B causes dopamine degradation which in turn Parkinson’s disease (PD) is the second most promotes the accumulation of glutamate and oxidative stress occurring disease after Alzheimer’s disease in elder with free radical liberation. -
Biddau, M. and Sheiner, L. (2019) Targeting the Apicoplast in Malaria. Biochemical Society Transactions, 47(4), Pp. 973-983. (Doi: 10.1042/BST20170563)
\ Biddau, M. and Sheiner, L. (2019) Targeting the apicoplast in malaria. Biochemical Society Transactions, 47(4), pp. 973-983. (doi: 10.1042/BST20170563) The material cannot be used for any other purpose without further permission of the publisher and is for private use only. There may be differences between this version and the published version. You are advised to consult the publisher’s version if you wish to cite from it. http://eprints.gla.ac.uk/191922/ Deposited on 07 August 2019 Enlighten – Research publications by members of the University of Glasgow http://eprints.gla.ac.uk 1 Targeting the apicoplast in malaria 2 3 Marco Biddau1* and Lilach Sheiner1* 4 5 1 Wellcome Centre for Integrative Parasitology, University of Glasgow, 120 University Place 6 Glasgow, United Kingdom. 7 8 *corresponding authors: [email protected]; [email protected] 9 10 Abbreviations aaRS aminoacyl-tRNA synthetase ABCF1 ATP-binding cassette protein F1 ACT Artemisinin-based combination therapy ATG Autophagy-related protein ATrxs Apicoplast thioredoxins Clp Caseinolytic protease DMT2 Divalent metal transporter 2 EF-G Elongator factor G EF-Tu Elongator factor thermo unstable FASII Fatty acid synthesis type II GGPP Geranylgeranyl pyrophosphate IPP Isopentenyl pyrophosphate ISC Iron-Sulfur cluster biosynthesis MMV Medicines for Malaria Venture 11 12 Abstract 13 Malaria continues to be one of the leading causes of human mortality in the world, and 14 the therapies available are insufficient for eradication. Malaria is caused by the 15 apicomplexan parasite Plasmodium. Apicomplexan parasites, including the 16 Plasmodium spp., are descendants of photosynthetic algae, and therefore they possess 17 an essential plastid organelle, named the apicoplast. -
Role of Rim101p in the Ph Response in Candida Albicans Michael Weyler
Role of Rim101p in the pH response in Candida albicans Michael Weyler To cite this version: Michael Weyler. Role of Rim101p in the pH response in Candida albicans. Biomolecules [q-bio.BM]. Université Paris Sud - Paris XI, 2007. English. tel-00165802 HAL Id: tel-00165802 https://tel.archives-ouvertes.fr/tel-00165802 Submitted on 27 Jul 2007 HAL is a multi-disciplinary open access L’archive ouverte pluridisciplinaire HAL, est archive for the deposit and dissemination of sci- destinée au dépôt et à la diffusion de documents entific research documents, whether they are pub- scientifiques de niveau recherche, publiés ou non, lished or not. The documents may come from émanant des établissements d’enseignement et de teaching and research institutions in France or recherche français ou étrangers, des laboratoires abroad, or from public or private research centers. publics ou privés. UNIVERSITE PARISXI UFR SCIENTIFIQUE D’ORSAY THESE présentée par Michael Weyler pour obtenir le grade de DOCTEUR EN SCIENCES DE L’UNIVERSITE PARISXI-ORSAY LE RÔLE DE RIM101p DANS LA RÉPONSE AU pH CHEZ CANDIDA ALBICANS Soutenance prévue le 6 juillet 2007 devant le jury composé de: Pr. Dr. H. Delacroix Président Dr. J-M. Camadro Rapporteur Pr. Dr. F. M. Klis Rapporteur Dr. G. Janbon Examinateur Dr. M. Lavie-Richard Examinateur Pr. Dr. C. Gaillardin Examinateur Remerciements Tout d’abord je voudrais remercier vivement mon directeur de thèse, Prof. Claude Gaillardin, pour m’avoir permis d’effectuer ce travail au sein de son laboratoire, pour ses conseils et sa disponibilité malgré son calendrier bien remplis. Je lui remercie également pour m’avoir laissé beaucoup de liberté dans mon travail, et pour la possibilité de participer aux différents congrès au cours de ma formation de thèse. -
Mitochondrial Genetics
Mitochondrial genetics Patrick Francis Chinnery and Gavin Hudson* Institute of Genetic Medicine, International Centre for Life, Newcastle University, Central Parkway, Newcastle upon Tyne NE1 3BZ, UK Introduction: In the last 10 years the field of mitochondrial genetics has widened, shifting the focus from rare sporadic, metabolic disease to the effects of mitochondrial DNA (mtDNA) variation in a growing spectrum of human disease. The aim of this review is to guide the reader through some key concepts regarding mitochondria before introducing both classic and emerging mitochondrial disorders. Sources of data: In this article, a review of the current mitochondrial genetics literature was conducted using PubMed (http://www.ncbi.nlm.nih.gov/pubmed/). In addition, this review makes use of a growing number of publically available databases including MITOMAP, a human mitochondrial genome database (www.mitomap.org), the Human DNA polymerase Gamma Mutation Database (http://tools.niehs.nih.gov/polg/) and PhyloTree.org (www.phylotree.org), a repository of global mtDNA variation. Areas of agreement: The disruption in cellular energy, resulting from defects in mtDNA or defects in the nuclear-encoded genes responsible for mitochondrial maintenance, manifests in a growing number of human diseases. Areas of controversy: The exact mechanisms which govern the inheritance of mtDNA are hotly debated. Growing points: Although still in the early stages, the development of in vitro genetic manipulation could see an end to the inheritance of the most severe mtDNA disease. Keywords: mitochondria/genetics/mitochondrial DNA/mitochondrial disease/ mtDNA Accepted: April 16, 2013 Mitochondria *Correspondence address. The mitochondrion is a highly specialized organelle, present in almost all Institute of Genetic Medicine, International eukaryotic cells and principally charged with the production of cellular Centre for Life, Newcastle energy through oxidative phosphorylation (OXPHOS). -
Arsenic Hexoxide Has Differential Effects on Cell Proliferation And
www.nature.com/scientificreports OPEN Arsenic hexoxide has diferential efects on cell proliferation and genome‑wide gene expression in human primary mammary epithelial and MCF7 cells Donguk Kim1,7, Na Yeon Park2,7, Keunsoo Kang3, Stuart K. Calderwood4, Dong‑Hyung Cho2, Ill Ju Bae5* & Heeyoun Bunch1,6* Arsenic is reportedly a biphasic inorganic compound for its toxicity and anticancer efects in humans. Recent studies have shown that certain arsenic compounds including arsenic hexoxide (AS4O6; hereafter, AS6) induce programmed cell death and cell cycle arrest in human cancer cells and murine cancer models. However, the mechanisms by which AS6 suppresses cancer cells are incompletely understood. In this study, we report the mechanisms of AS6 through transcriptome analyses. In particular, the cytotoxicity and global gene expression regulation by AS6 were compared in human normal and cancer breast epithelial cells. Using RNA‑sequencing and bioinformatics analyses, diferentially expressed genes in signifcantly afected biological pathways in these cell types were validated by real‑time quantitative polymerase chain reaction and immunoblotting assays. Our data show markedly diferential efects of AS6 on cytotoxicity and gene expression in human mammary epithelial normal cells (HUMEC) and Michigan Cancer Foundation 7 (MCF7), a human mammary epithelial cancer cell line. AS6 selectively arrests cell growth and induces cell death in MCF7 cells without afecting the growth of HUMEC in a dose‑dependent manner. AS6 alters the transcription of a large number of genes in MCF7 cells, but much fewer genes in HUMEC. Importantly, we found that the cell proliferation, cell cycle, and DNA repair pathways are signifcantly suppressed whereas cellular stress response and apoptotic pathways increase in AS6‑treated MCF7 cells. -
The Thyroid Hormone Mediation
Sabatino et al. Vessel Plus 2021;5:3 Vessel Plus DOI: 10.20517/2574-1209.2020.62 Review Open Access Oxidative stress and heart disease: the thyroid hormone mediation Laura Sabatino1, Rudina Ndreu1, Cristina Vassalle2 1National Research Council, Institute of Clinical Physiology, CNR, Pisa 56124, Italy. 2Fondazione CNR-Regione Toscana Gabriele Monasterio, Pisa 56124, Italy. Correspondence to: Dr. Laura Sabatino, Institute of Clinical Physiology, CNR, Via Moruzzi 1, Pisa 56124, Italy. E-mail: [email protected] How to cite this article: Sabatino L, Ndreu R, Vassalle C. Oxidative stress and heart disease: the thyroid hormone mediation. Vessel Plus 2021;5:3. http://dx.doi.org/10.20517/2574-1209.2020.62. Received: 30 Oct 2020 First Decision: 30 Nov 2020 Revised: 5 Dec 2020 Accepted: 16 Dec 2020 Published: 15 Jan 2021 Academic Editor: Sampath Parthasarathy, Narasimham L. Parinandi Copy Editor: Miao Zhang Production Editor: Jing Yu Abstract Received: First Decision: Revised: Accepted: Published: x The heart is one of the principal targets of thyroid hormones (TH) action, affecting cardiac contractility, heart rate, and diastolic function. Oxidative damage is pivotal for onset and development of cardiovascular disease (CVD) and Science Editor: Copy Editor: Production Editor: Jing Yu heart failure. Specifically, free radical generation is associated to hyper-metabolic state in hyperthyroidism, whereas hypo-metabolic state induced by hypothyroidism leads to a decrease of oxidative stress. In the present review, the role of oxidative damage in CVD and failing heart-TH interplay will be considered. The main oxidative events leading to cardiac dysfunction and TH cardiac regulation at genomic and non-genomic levels will be discussed, as well as role of TH in cardioprotection and reversion of cardiac remodeling. -
Extracellular Superoxide Dismutase Protects Against Pulmonary Emphysema by Attenuating Oxidative Fragmentation of ECM
Extracellular superoxide dismutase protects against pulmonary emphysema by attenuating oxidative fragmentation of ECM Hongwei Yaoa, Gnanapragasam Arunachalama, Jae-woong Hwanga, Sangwoon Chunga, Isaac K. Sundara, Vuokko L. Kinnulab, James D. Crapoc, and Irfan Rahmana,1 aDepartment of Environmental Medicine, Lung Biology and Disease Program, University of Rochester Medical Center, Rochester, NY 14642; bPulmonary Division, Department of Medicine, University of Helsinki and Helsinki University Hospital, FIN-00029 Helsinki, Finland; and cDepartment of Medicine, National Jewish Medical and Research Center, Denver, CO 80206 Edited by Irwin Fridovich, Duke University Medical Center, Durham, NC, and approved July 27, 2010 (received for review June 3, 2010) Extracellular superoxide dismutase (ECSOD or SOD3) is highly celerated decline in lung function. In addition to being a direct • ─ expressed in lungs and functions as a scavenger of O2 . ECM exogenous source of reactive oxygen species (ROS), CS also fragmentation, which can be triggered by oxidative stress, partic- induces endogenous production of ROS from activated inflam- ipates in the pathogenesis of chronic obstructive pulmonary dis- matory cells in the lung. ROS can fragment ECM components, such ease (COPD) through attracting inflammatory cells into the lungs. as elastin, heparan sulfate, and hyaluronan, which is an important The level of SOD3 is significantly decreased in lungs of patients factor in triggering lung inflammation and causing subsequent with COPD. However, the role of endogenous SOD3 in the devel- airspace enlargement (15–18). SOD3 has been shown to bind to opment/progression of emphysema is unknown. We hypothesized ECM through its positively charged C-terminal, thereby preventing that SOD3 protects against emphysema by attenuating oxidative oxidative fragmentation of ECM components (15, 19). -
Oxidative Stress and Immune System Dysfunction in Autism Spectrum Disorders
International Journal of Molecular Sciences Review Oxidative Stress and Immune System Dysfunction in Autism Spectrum Disorders Luca Pangrazzi *, Luigi Balasco and Yuri Bozzi Center for Mind/Brain Sciences (CIMeC), University of Trento, 38068 Rovereto, Italy; [email protected] (L.B.); [email protected] (Y.B.) * Correspondence: [email protected] Received: 10 April 2020; Accepted: 4 May 2020; Published: 6 May 2020 Abstract: Autism Spectrum Disorders (ASDs) represent a group of neurodevelopmental disorders associated with social and behavioral impairments. Although dysfunctions in several signaling pathways have been associated with ASDs, very few molecules have been identified as potentially effective drug targets in the clinic. Classically, research in the ASD field has focused on the characterization of pathways involved in neural development and synaptic plasticity, which support the pathogenesis of this group of diseases. More recently, immune system dysfunctions have been observed in ASD. In addition, high levels of reactive oxygen species (ROS), which cause oxidative stress, are present in ASD patients. In this review, we will describe the major alterations in the expression of genes coding for enzymes involved in the ROS scavenging system, in both ASD patients and ASD mouse models. In addition, we will discuss, in the context of the most recent literature, the possibility that oxidative stress, inflammation and immune system dysfunction may be connected to, and altogether support, the pathogenesis and/or severity of ASD. Finally, we will discuss the possibility of novel treatments aimed at counteracting the interplay between ROS and inflammation in people with ASD. Keywords: ROS; inflammation; ASD; autism; immune system 1.