Parallelization of Tim Sort Algorithm Using Mpi and Cuda
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Sort Algorithms 15-110 - Friday 2/28 Learning Objectives
Sort Algorithms 15-110 - Friday 2/28 Learning Objectives • Recognize how different sorting algorithms implement the same process with different algorithms • Recognize the general algorithm and trace code for three algorithms: selection sort, insertion sort, and merge sort • Compute the Big-O runtimes of selection sort, insertion sort, and merge sort 2 Search Algorithms Benefit from Sorting We use search algorithms a lot in computer science. Just think of how many times a day you use Google, or search for a file on your computer. We've determined that search algorithms work better when the items they search over are sorted. Can we write an algorithm to sort items efficiently? Note: Python already has built-in sorting functions (sorted(lst) is non-destructive, lst.sort() is destructive). This lecture is about a few different algorithmic approaches for sorting. 3 Many Ways of Sorting There are a ton of algorithms that we can use to sort a list. We'll use https://visualgo.net/bn/sorting to visualize some of these algorithms. Today, we'll specifically discuss three different sorting algorithms: selection sort, insertion sort, and merge sort. All three do the same action (sorting), but use different algorithms to accomplish it. 4 Selection Sort 5 Selection Sort Sorts From Smallest to Largest The core idea of selection sort is that you sort from smallest to largest. 1. Start with none of the list sorted 2. Repeat the following steps until the whole list is sorted: a) Search the unsorted part of the list to find the smallest element b) Swap the found element with the first unsorted element c) Increment the size of the 'sorted' part of the list by one Note: for selection sort, swapping the element currently in the front position with the smallest element is faster than sliding all of the numbers down in the list. -
Overview Parallel Merge Sort
CME 323: Distributed Algorithms and Optimization, Spring 2015 http://stanford.edu/~rezab/dao. Instructor: Reza Zadeh, Matriod and Stanford. Lecture 4, 4/6/2016. Scribed by Henry Neeb, Christopher Kurrus, Andreas Santucci. Overview Today we will continue covering divide and conquer algorithms. We will generalize divide and conquer algorithms and write down a general recipe for it. What's nice about these algorithms is that they are timeless; regardless of whether Spark or any other distributed platform ends up winning out in the next decade, these algorithms always provide a theoretical foundation for which we can build on. It's well worth our understanding. • Parallel merge sort • General recipe for divide and conquer algorithms • Parallel selection • Parallel quick sort (introduction only) Parallel selection involves scanning an array for the kth largest element in linear time. We then take the core idea used in that algorithm and apply it to quick-sort. Parallel Merge Sort Recall the merge sort from the prior lecture. This algorithm sorts a list recursively by dividing the list into smaller pieces, sorting the smaller pieces during reassembly of the list. The algorithm is as follows: Algorithm 1: MergeSort(A) Input : Array A of length n Output: Sorted A 1 if n is 1 then 2 return A 3 end 4 else n 5 L mergeSort(A[0, ..., 2 )) n 6 R mergeSort(A[ 2 , ..., n]) 7 return Merge(L, R) 8 end 1 Last lecture, we described one way where we can take our traditional merge operation and translate it into a parallelMerge routine with work O(n log n) and depth O(log n). -
Data Structures & Algorithms
DATA STRUCTURES & ALGORITHMS Tutorial 6 Questions SORTING ALGORITHMS Required Questions Question 1. Many operations can be performed faster on sorted than on unsorted data. For which of the following operations is this the case? a. checking whether one word is an anagram of another word, e.g., plum and lump b. findin the minimum value. c. computing an average of values d. finding the middle value (the median) e. finding the value that appears most frequently in the data Question 2. In which case, the following sorting algorithm is fastest/slowest and what is the complexity in that case? Explain. a. insertion sort b. selection sort c. bubble sort d. quick sort Question 3. Consider the sequence of integers S = {5, 8, 2, 4, 3, 6, 1, 7} For each of the following sorting algorithms, indicate the sequence S after executing each step of the algorithm as it sorts this sequence: a. insertion sort b. selection sort c. heap sort d. bubble sort e. merge sort Question 4. Consider the sequence of integers 1 T = {1, 9, 2, 6, 4, 8, 0, 7} Indicate the sequence T after executing each step of the Cocktail sort algorithm (see Appendix) as it sorts this sequence. Advanced Questions Question 5. A variant of the bubble sorting algorithm is the so-called odd-even transposition sort . Like bubble sort, this algorithm a total of n-1 passes through the array. Each pass consists of two phases: The first phase compares array[i] with array[i+1] and swaps them if necessary for all the odd values of of i. -
Selected Sorting Algorithms
Selected Sorting Algorithms CS 165: Project in Algorithms and Data Structures Michael T. Goodrich Some slides are from J. Miller, CSE 373, U. Washington Why Sorting? • Practical application – People by last name – Countries by population – Search engine results by relevance • Fundamental to other algorithms • Different algorithms have different asymptotic and constant-factor trade-offs – No single ‘best’ sort for all scenarios – Knowing one way to sort just isn’t enough • Many to approaches to sorting which can be used for other problems 2 Problem statement There are n comparable elements in an array and we want to rearrange them to be in increasing order Pre: – An array A of data records – A value in each data record – A comparison function • <, =, >, compareTo Post: – For each distinct position i and j of A, if i < j then A[i] ≤ A[j] – A has all the same data it started with 3 Insertion sort • insertion sort: orders a list of values by repetitively inserting a particular value into a sorted subset of the list • more specifically: – consider the first item to be a sorted sublist of length 1 – insert the second item into the sorted sublist, shifting the first item if needed – insert the third item into the sorted sublist, shifting the other items as needed – repeat until all values have been inserted into their proper positions 4 Insertion sort • Simple sorting algorithm. – n-1 passes over the array – At the end of pass i, the elements that occupied A[0]…A[i] originally are still in those spots and in sorted order. -
Chapter 19 Searching, Sorting and Big —Solutions
With sobs and tears he sorted out Those of the largest size … —Lewis Carroll Attempt the end, and never stand to doubt; Nothing’s so hard, but search will find it out. —Robert Herrick ’Tis in my memory lock’d, And you yourself shall keep the key of it. —William Shakespeare It is an immutable law in business that words are words, explanations are explanations, promises are promises — but only performance is reality. —Harold S. Green In this Chapter you’ll learn: ■ To search for a given value in an array using linear search and binary search. ■ To sort arrays using the iterative selection and insertion sort algorithms. ■ To sort arrays using the recursive merge sort algorithm. ■ To determine the efficiency of searching and sorting algorithms. © 2010 Pearson Education, Inc., Upper Saddle River, NJ. All Rights Reserved. 2 Chapter 19 Searching, Sorting and Big —Solutions Self-Review Exercises 19.1 Fill in the blanks in each of the following statements: a) A selection sort application would take approximately times as long to run on a 128-element array as on a 32-element array. ANS: 16, because an O(n2) algorithm takes 16 times as long to sort four times as much in- formation. b) The efficiency of merge sort is . ANS: O(n log n). 19.2 What key aspect of both the binary search and the merge sort accounts for the logarithmic portion of their respective Big Os? ANS: Both of these algorithms incorporate “halving”—somehow reducing something by half. The binary search eliminates from consideration one-half of the array after each comparison. -
Lecture 8.Key
CSC 391/691: GPU Programming Fall 2015 Parallel Sorting Algorithms Copyright © 2015 Samuel S. Cho Sorting Algorithms Review 2 • Bubble Sort: O(n ) 2 • Insertion Sort: O(n ) • Quick Sort: O(n log n) • Heap Sort: O(n log n) • Merge Sort: O(n log n) • The best we can expect from a sequential sorting algorithm using p processors (if distributed evenly among the n elements to be sorted) is O(n log n) / p ~ O(log n). Compare and Exchange Sorting Algorithms • Form the basis of several, if not most, classical sequential sorting algorithms. • Two numbers, say A and B, are compared between P0 and P1. P0 P1 A B MIN MAX Bubble Sort • Generic example of a “bad” sorting 0 1 2 3 4 5 algorithm. start: 1 3 8 0 6 5 0 1 2 3 4 5 Algorithm: • after pass 1: 1 3 0 6 5 8 • Compare neighboring elements. • Swap if neighbor is out of order. 0 1 2 3 4 5 • Two nested loops. after pass 2: 1 0 3 5 6 8 • Stop when a whole pass 0 1 2 3 4 5 completes without any swaps. after pass 3: 0 1 3 5 6 8 0 1 2 3 4 5 • Performance: 2 after pass 4: 0 1 3 5 6 8 Worst: O(n ) • 2 • Average: O(n ) fin. • Best: O(n) "The bubble sort seems to have nothing to recommend it, except a catchy name and the fact that it leads to some interesting theoretical problems." - Donald Knuth, The Art of Computer Programming Odd-Even Transposition Sort (also Brick Sort) • Simple sorting algorithm that was introduced in 1972 by Nico Habermann who originally developed it for parallel architectures (“Parallel Neighbor-Sort”). -
Sorting Algorithm 1 Sorting Algorithm
Sorting algorithm 1 Sorting algorithm In computer science, a sorting algorithm is an algorithm that puts elements of a list in a certain order. The most-used orders are numerical order and lexicographical order. Efficient sorting is important for optimizing the use of other algorithms (such as search and merge algorithms) that require sorted lists to work correctly; it is also often useful for canonicalizing data and for producing human-readable output. More formally, the output must satisfy two conditions: 1. The output is in nondecreasing order (each element is no smaller than the previous element according to the desired total order); 2. The output is a permutation, or reordering, of the input. Since the dawn of computing, the sorting problem has attracted a great deal of research, perhaps due to the complexity of solving it efficiently despite its simple, familiar statement. For example, bubble sort was analyzed as early as 1956.[1] Although many consider it a solved problem, useful new sorting algorithms are still being invented (for example, library sort was first published in 2004). Sorting algorithms are prevalent in introductory computer science classes, where the abundance of algorithms for the problem provides a gentle introduction to a variety of core algorithm concepts, such as big O notation, divide and conquer algorithms, data structures, randomized algorithms, best, worst and average case analysis, time-space tradeoffs, and lower bounds. Classification Sorting algorithms used in computer science are often classified by: • Computational complexity (worst, average and best behaviour) of element comparisons in terms of the size of the list . For typical sorting algorithms good behavior is and bad behavior is . -
Arxiv:1812.03318V1 [Cs.SE] 8 Dec 2018 Rived from Merge Sort and Insertion Sort, Designed to Work Well on Many Kinds of Real-World Data
A Verified Timsort C Implementation in Isabelle/HOL Yu Zhang1, Yongwang Zhao1 , and David Sanan2 1 School of Computer Science and Engineering, Beihang University, Beijing, China [email protected] 2 School of Computer Science and Engineering, Nanyang Technological University, Singapore Abstract. Formal verification of traditional algorithms are of great significance due to their wide application in state-of-the-art software. Timsort is a complicated and hybrid stable sorting algorithm, derived from merge sort and insertion sort. Although Timsort implementation in OpenJDK has been formally verified, there is still not a standard and formally verified Timsort implementation in C programming language. This paper studies Timsort implementation and its formal verification using a generic imperative language - Simpl in Isabelle/HOL. Then, we manually generate an C implementation of Timsort from the verified Simpl specification. Due to the C-like concrete syntax of Simpl, the code generation is straightforward. The C implementation has also been tested by a set of random test cases. Keywords: Program Verification · Timsort · Isabelle/HOL 1 Introduction Formal verification has been considered as a promising way to the reliability of programs. With development of verification tools, it is possible to perform fully formal verification of large and complex programs in recent years [2,3]. Formal verification of traditional algorithms are of great significance due to their wide application in state-of-the-art software. The goal of this paper is the functional verification of sorting algorithms as well as generation of C source code. We investigated Timsort algorithm which is a hybrid stable sorting algorithm, de- arXiv:1812.03318v1 [cs.SE] 8 Dec 2018 rived from merge sort and insertion sort, designed to work well on many kinds of real-world data. -
Fast Parallel GPU-Sorting Using a Hybrid Algorithm
Fast Parallel GPU-Sorting Using a Hybrid Algorithm Erik Sintorn Ulf Assarsson Department of Computer Science and Engineering Department of Computer Science and Engineering Chalmers University Of Technology Chalmers University Of Technology Gothenburg, Sweden Gothenburg, Sweden Email: [email protected] Email: uffe at chalmers dot se Abstract— This paper presents an algorithm for fast sorting of that supports scattered writing. The GPU-sorting algorithms large lists using modern GPUs. The method achieves high speed are highly bandwidth-limited, which is illustrated for instance by efficiently utilizing the parallelism of the GPU throughout the by the fact that sorting of 8-bit values [10] are nearly four whole algorithm. Initially, a parallel bucketsort splits the list into enough sublists then to be sorted in parallel using merge-sort. The times faster than for 32-bit values [2]. To improve the speed of parallel bucketsort, implemented in NVIDIA’s CUDA, utilizes the memory reads, we therefore design a vector-based mergesort, synchronization mechanisms, such as atomic increment, that is using CUDA and log n render passes, to work on four 32- available on modern GPUs. The mergesort requires scattered bit floats simultaneously, resulting in a nearly 4 times speed writing, which is exposed by CUDA and ATI’s Data Parallel improvement compared to merge-sorting on single floats. The Virtual Machine[1]. For lists with more than 512k elements, the algorithm performs better than the bitonic sort algorithms, which Vector-Mergesort of two four-float vectors is achieved by using have been considered to be the fastest for GPU sorting, and is a custom designed parallel compare-and-swap algorithm, on more than twice as fast for 8M elements. -
How to Sort out Your Life in O(N) Time
How to sort out your life in O(n) time arel Číže @kaja47K funkcionaklne.cz I said, "Kiss me, you're beautiful - These are truly the last days" Godspeed You! Black Emperor, The Dead Flag Blues Everyone, deep in their hearts, is waiting for the end of the world to come. Haruki Murakami, 1Q84 ... Free lunch 1965 – 2022 Cramming More Components onto Integrated Circuits http://www.cs.utexas.edu/~fussell/courses/cs352h/papers/moore.pdf He pays his staff in junk. William S. Burroughs, Naked Lunch Sorting? quicksort and chill HS 1964 QS 1959 MS 1945 RS 1887 quicksort, mergesort, heapsort, radix sort, multi- way merge sort, samplesort, insertion sort, selection sort, library sort, counting sort, bucketsort, bitonic merge sort, Batcher odd-even sort, odd–even transposition sort, radix quick sort, radix merge sort*, burst sort binary search tree, B-tree, R-tree, VP tree, trie, log-structured merge tree, skip list, YOLO tree* vs. hashing Robin Hood hashing https://cs.uwaterloo.ca/research/tr/1986/CS-86-14.pdf xs.sorted.take(k) (take (sort xs) k) qsort(lotOfIntegers) It may be the wrong decision, but fuck it, it's mine. (Mark Z. Danielewski, House of Leaves) I tell you, my man, this is the American Dream in action! We’d be fools not to ride this strange torpedo all the way out to the end. (HST, FALILV) Linear time sorting? I owe the discovery of Uqbar to the conjunction of a mirror and an Encyclopedia. (Jorge Luis Borges, Tlön, Uqbar, Orbis Tertius) Sorting out graph processing https://github.com/frankmcsherry/blog/blob/master/posts/2015-08-15.md Radix Sort Revisited http://www.codercorner.com/RadixSortRevisited.htm Sketchy radix sort https://github.com/kaja47/sketches (thinking|drinking|WTF)* I know they accuse me of arrogance, and perhaps misanthropy, and perhaps of madness. -
GPU Sample Sort We Should Mention That Hybrid Sort [15] and Bbsort [4] Involve a Distribution Phase Assuming That the Keys Are Uniformly Distributed
GPU Sample Sort Nikolaj Leischner∗ Vitaly Osipov† Peter Sanders‡ Abstract In this paper, we present the design of a sample sort algorithm for manycore GPUs. Despite being one of the most efficient comparison-based sorting algorithms for distributed memory architectures its performance on GPUs was previously unknown. For uniformly distributed keys our sample sort is at least 25% and on average 68% faster than the best comparison-based sorting algorithm, GPU Thrust merge sort, and on average more than 2 times faster than GPU quicksort. Moreover, for 64-bit integer keys it is at least 63% and on average 2 times faster than the highly optimized GPU Thrust radix sort that directly manipulates the binary representation of keys. Our implementation is robust to different distributions and entropy levels of keys and scales almost linearly with the input size. These results indicate that multi-way techniques in general and sample sort in particular achieve substantially better performance than two-way merge sort and quicksort. 1 Introduction Sorting is one of the most widely researched computational problems in computer science. It is an essential building block for numerous algorithms, whose performance depends on the efficiency of sorting. It is also an internal primitive utilized by database operations, and therefore, any applica- tion that uses a database may benefit from an efficient sorting algorithm. Geographic information systems, computational biology, and search engines are further fields that involve sorting. Hence, it is of utmost importance to provide efficient sort primitives for emerging architectures, which arXiv:0909.5649v1 [cs.DS] 30 Sep 2009 exploit architectural attributes, such as increased parallelism that were not available before. -
Gsoc 2018 Project Proposal
GSoC 2018 Project Proposal Description: Implement the project idea sorting algorithms benchmark and implementation (2018) Applicant Information: Name: Kefan Yang Country of Residence: Canada University: Simon Fraser University Year of Study: Third year Major: Computing Science Self Introduction: I am Kefan Yang, a third-year computing science student from Simon Fraser University, Canada. I have rich experience as a full-stack web developer, so I am familiar with different kinds of database, such as PostgreSQL, MySQL and MongoDB. I have a much better understand of database system other than how to use it. In the database course I took in the university, I implemented a simple SQL database. It supports basic SQL statements like select, insert, delete and update, and uses a B+ tree to index the records by default. The size of each node in the B+ tree is set the disk block size to maximize performance of disk operation. Also, 1 several kinds of merging algorithms are used to perform a cross table query. More details about this database project can be found here. Additionally, I have very solid foundation of basic algorithms and data structure. I’ve participated in division 1 contest of 2017 ACM-ICPC Pacific Northwest Regionals as a representative of Simon Fraser University, which clearly shows my talents in understanding and applying different kinds of algorithms. I believe the contest experience will be a big help for this project. Benefits to the PostgreSQL Community: Sorting routine is an important part of many modules in PostgreSQL. Currently, PostgreSQL is using median-of-three quicksort introduced by Bentley and Mcllroy in 1993 [1], which is somewhat outdated.