Crossmedia File System Metafs Exploiting Performance Characteristics from Flash Storage and HDD
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Development of a Verified Flash File System ⋆
Development of a Verified Flash File System ? Gerhard Schellhorn, Gidon Ernst, J¨orgPf¨ahler,Dominik Haneberg, and Wolfgang Reif Institute for Software & Systems Engineering University of Augsburg, Germany fschellhorn,ernst,joerg.pfaehler,haneberg,reifg @informatik.uni-augsburg.de Abstract. This paper gives an overview over the development of a for- mally verified file system for flash memory. We describe our approach that is based on Abstract State Machines and incremental modular re- finement. Some of the important intermediate levels and the features they introduce are given. We report on the verification challenges addressed so far, and point to open problems and future work. We furthermore draw preliminary conclusions on the methodology and the required tool support. 1 Introduction Flaws in the design and implementation of file systems already lead to serious problems in mission-critical systems. A prominent example is the Mars Explo- ration Rover Spirit [34] that got stuck in a reset cycle. In 2013, the Mars Rover Curiosity also had a bug in its file system implementation, that triggered an au- tomatic switch to safe mode. The first incident prompted a proposal to formally verify a file system for flash memory [24,18] as a pilot project for Hoare's Grand Challenge [22]. We are developing a verified flash file system (FFS). This paper reports on our progress and discusses some of the aspects of the project. We describe parts of the design, the formal models, and proofs, pointing out challenges and solutions. The main characteristic of flash memory that guides the design is that data cannot be overwritten in place, instead space can only be reused by erasing whole blocks. -
ZBD: Using Transparent Compression at the Block Level to Increase Storage Space Efficiency
ZBD: Using Transparent Compression at the Block Level to Increase Storage Space Efficiency Thanos Makatos∗†, Yannis Klonatos∗†, Manolis Marazakis∗, Michail D. Flouris∗, and Angelos Bilas∗† ∗ Foundation for Research and Technology - Hellas (FORTH) Institute of Computer Science (ICS) 100 N. Plastira Av., Vassilika Vouton, Heraklion, GR-70013, Greece † Department of Computer Science, University of Crete P.O. Box 2208, Heraklion, GR 71409, Greece {mcatos, klonatos, maraz, flouris, bilas}@ics.forth.gr Abstract—In this work we examine how transparent compres- • Logical to physical block mapping: Block-level compres- sion in the I/O path can improve space efficiency for online sion imposes a many-to-one mapping from logical to storage. We extend the block layer with the ability to compress physical blocks, as multiple compressed logical blocks and decompress data as they flow between the file-system and the disk. Achieving transparent compression requires extensive must be stored in the same physical block. This requires metadata management for dealing with variable block sizes, dy- using a translation mechanism that imposes low overhead namic block mapping, block allocation, explicit work scheduling in the common I/O path and scales with the capacity and I/O optimizations to mitigate the impact of additional I/Os of the underlying devices as well as a block alloca- and compression overheads. Preliminary results show that online tion/deallocation mechanism that affects data placement. transparent compression is a viable option for improving effective • storage capacity, it can improve I/O performance by reducing Increased number of I/Os: Using compression increases I/O traffic and seek distance, and has a negative impact on the number of I/Os required on the critical path during performance only when single-thread I/O latency is critical. -
Recursive Updates in Copy-On-Write File Systems - Modeling and Analysis
2342 JOURNAL OF COMPUTERS, VOL. 9, NO. 10, OCTOBER 2014 Recursive Updates in Copy-on-write File Systems - Modeling and Analysis Jie Chen*, Jun Wang†, Zhihu Tan*, Changsheng Xie* *School of Computer Science and Technology Huazhong University of Science and Technology, China *Wuhan National Laboratory for Optoelectronics, Wuhan, Hubei 430074, China [email protected], {stan, cs_xie}@hust.edu.cn †Dept. of Electrical Engineering and Computer Science University of Central Florida, Orlando, Florida 32826, USA [email protected] Abstract—Copy-On-Write (COW) is a powerful technique recursive update. Recursive updates can lead to several for data protection in file systems. Unfortunately, it side effects to a storage system, such as write introduces a recursively updating problem, which leads to a amplification (also can be referred as additional writes) side effect of write amplification. Studying the behaviors of [4], I/O pattern alternation [5], and performance write amplification is important for designing, choosing and degradation [6]. This paper focuses on the side effects of optimizing the next generation file systems. However, there are many difficulties for evaluation due to the complexity of write amplification. file systems. To solve this problem, we proposed a typical Studying the behaviors of write amplification is COW file system model based on BTRFS, verified its important for designing, choosing, and optimizing the correctness through carefully designed experiments. By next generation file systems, especially when the file analyzing this model, we found that write amplification is systems uses a flash-memory-based underlying storage greatly affected by the distributions of files being accessed, system under online transaction processing (OLTP) which varies from 1.1x to 4.2x. -
F2punifycr: a Flash-Friendly Persistent Burst-Buffer File System
F2PUnifyCR: A Flash-friendly Persistent Burst-Buffer File System ThanOS Department of Computer Science Florida State University Tallahassee, United States I. ABSTRACT manifold depending on the workloads it is handling for With the increased amount of supercomputing power, applications. In order to leverage the capabilities of burst it is now possible to work with large scale data that buffers to the utmost level, it is very important to have a pose a continuous opportunity for exascale computing standardized software interface across systems. It has to that puts immense pressure on underlying persistent data deal with an immense amount of data during the runtime storage. Burst buffers, a distributed array of node-local of the applications. persistent flash storage devices deployed on most of Using node-local burst buffer can achieve scalable the leardership supercomputers, are means to efficiently write bandwidth as it lets each process write to the handling the bursty I/O invoked through cutting-edge local flash drive, but when the files are shared across scientific applications. In order to manage these burst many processes, it puts the management of metadata buffers, many ephemeral user level file system solutions, and object data of the files under huge challenge. In like UnifyCR, are present in the research and industry order to handle all the challenges posed by the bursty arena. Because of the intrinsic nature of the flash devices and random I/O requests by the Scientific Applica- due to background processing overhead, like Garbage tions running on leadership Supercomputing clusters, Collection, peak write bandwidth is hard to get. -
No Slide Title
An Embedded Storage Framework Abstracting Each Raw Flash Device as An MTD Wei Wang, Deng Zhou, and Tao Xie, San Diego State University, San Diego, CA 92182 The 8th ACM International Systems and Storage Conference (SYSTOR 2015, Full Paper), Haifa, Israel, May 26-28, 2015 Introduction Our Design1: MTD Proxy Middleware mobile devices such as smart- phones and 3-D digital cameras The MTD proxy middleware has normally use raw flash memory device directly managed by an the following components: embedded flash file system, a dedicated file system designed for address mapping, access storing files on raw flash memory devices. Thus, in addition to queuing management, multiple provide normal file system functions and interface to up layer work thread layer, proxy system, flash file systems are also designed to directly control raw interface module, With the flash memory devices, they can address the inherent constraints of support of the four components, flash (e.g., wear out issue and the erase-before-write problem). the MTD proxy middleware Although existing embedded flash storage systems are effective for enables an existing flash file traditional mobile applications, they are becoming increasingly system to communicate with an inadequate for emerging data- intensive mobile applications due to array of MTD devices without the following limitations: no modifications of existing (1) Insufficient storage capacity: One of the most remarkable trends flash file systems, which is an of mobile computing is that emerging mobile applications are attractive feature for system creating huge volume of data. design and optimization. Figure 2. MTD Proxy Middleware. (2) Incompetent performance: current flash file system only supports serial IO access. -
Architecture and Performance of Perlmutter's 35 PB Clusterstor
Lawrence Berkeley National Laboratory Recent Work Title Architecture and Performance of Perlmutter’s 35 PB ClusterStor E1000 All-Flash File System Permalink https://escholarship.org/uc/item/90r3s04z Authors Lockwood, Glenn K Chiusole, Alberto Gerhardt, Lisa et al. Publication Date 2021-06-18 Peer reviewed eScholarship.org Powered by the California Digital Library University of California Architecture and Performance of Perlmutter’s 35 PB ClusterStor E1000 All-Flash File System Glenn K. Lockwood, Alberto Chiusole, Lisa Gerhardt, Kirill Lozinskiy, David Paul, Nicholas J. Wright Lawrence Berkeley National Laboratory fglock, chiusole, lgerhardt, klozinskiy, dpaul, [email protected] Abstract—NERSC’s newest system, Perlmutter, features a 35 1,536 GPU nodes 16 Lustre MDSes PB all-flash Lustre file system built on HPE Cray ClusterStor 1x AMD Epyc 7763 1x AMD Epyc 7502 4x NVIDIA A100 2x Slingshot NICs E1000. We present its architecture, early performance figures, 4x Slingshot NICs Slingshot Network 24x 15.36 TB NVMe and performance considerations unique to this architecture. We 200 Gb/s demonstrate the performance of E1000 OSSes through low-level 2-level dragonfly 16 Lustre OSSes 3,072 CPU nodes Lustre tests that achieve over 90% of the theoretical bandwidth 1x AMD Epyc 7502 2x AMD Epyc 7763 2x Slingshot NICs of the SSDs at the OST and LNet levels. We also show end-to-end 1x Slingshot NICs performance for both traditional dimensions of I/O performance 24x 15.36 TB NVMe (peak bulk-synchronous bandwidth) and non-optimal workloads endemic to production computing (small, incoherent I/Os at 24 Gateway nodes 2 Arista 7804 routers 2x Slingshot NICs 400 Gb/s/port random offsets) and compare them to NERSC’s previous system, 2x 200G HCAs > 10 Tb/s routing Cori, to illustrate that Perlmutter achieves the performance of a burst buffer and the resilience of a scratch file system. -
UBI - Unsorted Block Images
UBI - Unsorted Block Images Thomas Gleixner Frank Haverkamp Artem Bityutskiy UBI - Unsorted Block Images by Thomas Gleixner, Frank Haverkamp, and Artem Bityutskiy Copyright © 2006 International Business Machines Corp. Revision History Revision v1.0.0 2006-06-09 Revised by: haver Release Version. Table of Contents 1. Document conventions...........................................................................................................................1 2. Introduction............................................................................................................................................2 UBI Volumes......................................................................................................................................2 Static Volumes ..........................................................................................................................2 Dynamic Volumes.....................................................................................................................3 3. MTD integration ....................................................................................................................................4 Simple partitioning.............................................................................................................................4 Complex partitioning .........................................................................................................................5 4. UBI design ..............................................................................................................................................6 -
Journaling File Systems
JOURNALING FILE SYSTEMS CS124 – Operating Systems Spring 2021, Lecture 26 2 File System Robustness • The operating system keeps a cache of filesystem data • Secondary storage devices are much slower than main memory • Caching frequently-used disk blocks in memory yields significant performance improvements by avoiding disk-IO operations • ProBlem 1: Operating systems crash. Hardware fails. • ProBlem 2: Many filesystem operations involve multiple steps • Example: deleting a file minimally involves removing a directory entry, and updating the free map • May involve several other steps depending on filesystem design • If only some of these steps are successfully written to disk, filesystem corruption is highly likely 3 File System Robustness (2) • The OS should try to maintain the filesystem’s correctness • …at least, in some minimal way… • Example: ext2 filesystems maintain a “mount state” in the filesystem’s superBlock on disk • When filesystem is mounted, this value is set to indicate how the filesystem is mounted (e.g. read-only, etc.) • When the filesystem is cleanly unmounted, the mount-state is set to EXT2_VALID_FS to record that the filesystem is trustworthy • When OS starts up, if it sees an ext2 drive’s mount-state as not EXT2_VALID_FS, it knows something happened • The OS can take steps to verify the filesystem, and fix it if needed • Typically, this involves running the fsck system utility • “File System Consistency checK” • (Frequently, OSes also run scheduled filesystem checks too) 4 The fsck Utility • To verify the filesystem, -
Designing an All-Flash Lustre File System for the 2020 NERSC Perlmutter System
Designing an All-Flash Lustre File System for the 2020 NERSC Perlmutter System Glenn K. Lockwood, Kirill Lozinskiy, Lisa Gerhardt, Ravi Cheema, Damian Hazen, Nicholas J. Wright National Energy Research Scientific Computing Center Lawrence Berkeley National Laboratory fglock, klozinskiy, lgerhardt, rcheema, dhazen, [email protected] Abstract—New experimental and AI-driven workloads are of traditional checkpoint-restart and do not perform optimally moving into the realm of extreme-scale HPC systems at the same on today’s production, disk-based parallel file systems. time that high-performance flash is becoming cost-effective to Fortunately, the cost of flash-based solid-state disks (SSDs) deploy at scale. This confluence poses a number of new technical and economic challenges and opportunities in designing the next has reached a point where it is now cost-effective to integrate generation of HPC storage and I/O subsystems to achieve the flash into large-scale HPC systems to work around many right balance of bandwidth, latency, endurance, and cost. In of the limitations intrinsic to disk-based high-performance this paper, we present the quantitative approach to requirements storage systems [12]–[14]. The current state of the art is to definition that resulted in the 30 PB all-flash Lustre file system integrate flash as a burst buffer which logically resides between that will be deployed with NERSC’s upcoming Perlmutter system in 2020. By integrating analysis of current workloads and user applications and lower-performing disk-based parallel file projections of future performance and throughput, we were systems. Burst buffers have already been shown to benefit able to constrain many critical design space parameters and experimental and observational data analysis in a multitude quantitatively demonstrate that Perlmutter will not only deliver of science domains including high-energy physics, astronomy, high performance, but effectively balance cost with capacity, bioinformatics, and climate [6], [8], [15]–[17]. -
Flash File System Considerations
Flash File System Considerations Charles Manning 2014-08-18 We have been developing flash file system for embedded systems since 1995. Dur- ing that time, we have gained a wealth of knowledge and experience. This document outlines some of the major issues that must be considered when selecting a Flash File system for embedded use. It also explains how using the Yaffs File System increases reliability, reduces risk and saves money. Introduction As embedded system complexity increases and flash storage prices decrease, we see more use of embedded file systems to store data, and so data corruption and loss has become an important cause of system failure. When Aleph One began the development of Yaffs in late 2001, we built on experience in flash file system design since 1995. This experience helped to identify the key factors in mak- ing Yaffs a fast and robust flash file system now being widely used around the world. Although it was originally developed for Linux, Yaffs was designed to be highly portable. This has allowed Yaffs to be ported to many different OSs (including Linux, BSD, Windows CE) and numerous RTOSs (including VxWorks, eCos and pSOS). Yaffs is written in fully portable C code and has been used on many different CPU architec- tures – both little- and big-endian. These include ARM, x86 and PowerPC, soft cores such as NIOS and Microblaze and even various DSP architectures. We believe that the Yaffs code base has been used on more OS types and more CPU types than any other file system code base. Since its introduction, Yaffs has been used in hundreds of different products and hundreds of millions of different devices in widely diverse application areas from mining to aerospace and everything in between. -
Linux Kernel Series
Linux Kernel Series By Devyn Collier Johnson More Linux Related Stuff on: http://www.linux.org Linux Kernel – The Series by Devyn Collier Johnson (DevynCJohnson) [email protected] Introduction In 1991, a Finnish student named Linus Benedict Torvalds made the kernel of a now popular operating system. He released Linux version 0.01 on September 1991, and on February 1992, he licensed the kernel under the GPL license. The GNU General Public License (GPL) allows people to use, own, modify, and distribute the source code legally and free of charge. This permits the kernel to become very popular because anyone may download it for free. Now that anyone can make their own kernel, it may be helpful to know how to obtain, edit, configure, compile, and install the Linux kernel. A kernel is the core of an operating system. The operating system is all of the programs that manages the hardware and allows users to run applications on a computer. The kernel controls the hardware and applications. Applications do not communicate with the hardware directly, instead they go to the kernel. In summary, software runs on the kernel and the kernel operates the hardware. Without a kernel, a computer is a useless object. There are many reasons for a user to want to make their own kernel. Many users may want to make a kernel that only contains the code needed to run on their system. For instance, my kernel contains drivers for FireWire devices, but my computer lacks these ports. When the system boots up, time and RAM space is wasted on drivers for devices that my system does not have installed. -
DMF 7 & Tier Zero: Scalable Architecture & Roadmap
DMF 7 & Tier Zero: Scalable Architecture & Roadmap Jan 2017 For Hewlett Packard Enterprise Internal and Channel Partner Use Only HPC (Compute/Storage) Roadmap Forward-Looking Statements This document contains forward looking statements regarding future operations, product development, product capabilities and availability dates. This information is subject to substantial uncertainties and is subject to change at any time without prior notification. Statements contained in this document concerning these matters only reflect Hewlett-Packard Enterprise's predictions and / or expectations as of the date of this document and actual results and future plans of Hewlett-Packard Enterprise may differ significantly as a result of, among other things, changes in product strategy resulting from technological, internal corporate, market and other changes. This is not a commitment to deliver any material, code or functionality and should not be relied upon in making purchasing decisions. HPE Confidential | NDA Required HPC Workflows | Solving Challenges Inspiration – It’s not just about FLOPs anymore – It’s about efficiently sharing active HPC data sets – Understanding job I/O requirements – Accelerates performance – Improves successful completion – Enables co-scheduling to optimize utilization – Placing data in proper tiers is key – Have data available in high-performance tier when job is starting – Store results in high resiliency tier when ready – Remove data from high-performance tier when done HPC Workflows | Data Tiering Model Active & Dormant