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Article Evolutionary Dynamics of the OR Gene Repertoire in Teleost Fishes
bioRxiv preprint doi: https://doi.org/10.1101/2021.03.09.434524; this version posted March 10, 2021. The copyright holder for this preprint (which was not certified by peer review) is the author/funder. All rights reserved. No reuse allowed without permission. Article Evolutionary dynamics of the OR gene repertoire in teleost fishes: evidence of an association with changes in olfactory epithelium shape Maxime Policarpo1, Katherine E Bemis2, James C Tyler3, Cushla J Metcalfe4, Patrick Laurenti5, Jean-Christophe Sandoz1, Sylvie Rétaux6 and Didier Casane*,1,7 1 Université Paris-Saclay, CNRS, IRD, UMR Évolution, Génomes, Comportement et Écologie, 91198, Gif-sur-Yvette, France. 2 NOAA National Systematics Laboratory, National Museum of Natural History, Smithsonian Institution, Washington, D.C. 20560, U.S.A. 3Department of Paleobiology, National Museum of Natural History, Smithsonian Institution, Washington, D.C., 20560, U.S.A. 4 Independent Researcher, PO Box 21, Nambour QLD 4560, Australia. 5 Université de Paris, Laboratoire Interdisciplinaire des Energies de Demain, Paris, France 6 Université Paris-Saclay, CNRS, Institut des Neurosciences Paris-Saclay, 91190, Gif-sur- Yvette, France. 7 Université de Paris, UFR Sciences du Vivant, F-75013 Paris, France. * Corresponding author: e-mail: [email protected]. !1 bioRxiv preprint doi: https://doi.org/10.1101/2021.03.09.434524; this version posted March 10, 2021. The copyright holder for this preprint (which was not certified by peer review) is the author/funder. All rights reserved. No reuse allowed without permission. Abstract Teleost fishes perceive their environment through a range of sensory modalities, among which olfaction often plays an important role. -
An Endangered Seahorse Selectively Chooses an Artificial Structure
Environ Biol Fish (2018) 101:723–733 https://doi.org/10.1007/s10641-018-0732-4 An endangered seahorse selectively chooses an artificial structure Louw Claassens & Anthony J. Booth & Alan N. Hodgson Received: 4 October 2017 /Accepted: 15 January 2018 /Published online: 22 January 2018 # Springer Science+Business Media B.V., part of Springer Nature 2018 Abstract The development of a residential marina es- Keywords Zostera Capensis . Hippocampus capensis . tate within the Knysna estuary, South Africa, introduced Habitat choice . Estuary. Reno mattress Reno mattresses (horizontal wire cages filled with rocks) as a novel habitat for the endangered Knysna seahorse Hippocampus capensis. Consistently high Introduction seahorse densities on these artificial structures, despite the availability of seagrass habitat, begged the question The coastal zone is known for its high population den- of whether this habitat was chosen by the seahorse in sity and development pressures (Nicholls and Small preference to natural vegetation. An in situ habitat 2002), and a major challenge for conservationists is to choice experiment was conducted which focused on conserve despite these pressures. Specifically, urban the choice made by adult H. capensis between natural sprawl has spread into our coastal and estuarine envi- vegetation (Zostera capensis) and artificial (Reno mat- ronments and this phenomenon has been dubbed ‘ocean tress) habitat within a choice chamber. Seahorses were sprawl’ (Firth et al. 2016a). Ocean sprawl can be defined significantly more likely to move away from Z. capensis as: Bthe proliferation of artificial structures associated onto a Reno mattress structure or remain on this struc- with coastal protection, shipping, aquaculture, and other ture. -
Pacific Plate Biogeography, with Special Reference to Shorefishes
Pacific Plate Biogeography, with Special Reference to Shorefishes VICTOR G. SPRINGER m SMITHSONIAN CONTRIBUTIONS TO ZOOLOGY • NUMBER 367 SERIES PUBLICATIONS OF THE SMITHSONIAN INSTITUTION Emphasis upon publication as a means of "diffusing knowledge" was expressed by the first Secretary of the Smithsonian. In his formal plan for the Institution, Joseph Henry outlined a program that included the following statement: "It is proposed to publish a series of reports, giving an account of the new discoveries in science, and of the changes made from year to year in all branches of knowledge." This theme of basic research has been adhered to through the years by thousands of titles issued in series publications under the Smithsonian imprint, commencing with Smithsonian Contributions to Knowledge in 1848 and continuing with the following active series: Smithsonian Contributions to Anthropology Smithsonian Contributions to Astrophysics Smithsonian Contributions to Botany Smithsonian Contributions to the Earth Sciences Smithsonian Contributions to the Marine Sciences Smithsonian Contributions to Paleobiology Smithsonian Contributions to Zoo/ogy Smithsonian Studies in Air and Space Smithsonian Studies in History and Technology In these series, the Institution publishes small papers and full-scale monographs that report the research and collections of its various museums and bureaux or of professional colleagues in the world cf science and scholarship. The publications are distributed by mailing lists to libraries, universities, and similar institutions throughout the world. Papers or monographs submitted for series publication are received by the Smithsonian Institution Press, subject to its own review for format and style, only through departments of the various Smithsonian museums or bureaux, where the manuscripts are given substantive review. -
Some Questions Concerning the Syngnathidae Brood Pouch
BULLETIN OF MARINE SCIENCE, 49(3): 741-747,1991 SOME QUESTIONS CONCERNING THE SYNGNATHIDAE BROOD POUCH Marie Y. Azzarello ABSTRACT For more than a century the physiological role of the Syngnathidae brood pouch has been the subject of scientific interest and debate. Some of the earliest investigators purported that the highly vascular brood pouch was physiologically adapted for the reception of fertilized eggs and for the sustenance of the embryos (i.e., a "pseudo-placenta"). Others posited that the brood pouch served as an osmoregulatory organ for the developing embryos. To determine whether the primary physiological role of the brood pouch is one of nutrition or osmoreg- ulation, Syngnathus scove/li embryos were removed from the brood pouch at different de- velopmental stages (4.0-13.0 mm TL), placed in sterilized, aerated, artificial seawater hyper- or iso-osmotic to the blood and pouch fluid, to which no nutritive substances were added. In hyperosmotic media 25.7% of the in vitro embryos completed their normal gestation versus 18.7% in iso-osmotic media. These results appear to indicate that the male Syng- nathidae brood pouch serves neither as the primary nutritional source nor as an osmotic buffer for the developing embryos after a length of 4.0 mm TL is achieved. Members of the Syngnathidae manifest atypical reproductive behavior and parental care. Reproduction is ovoviviparous with a complete reversal of the usual maternal and paternal brooding roles. Large telolecithal eggs produced by the female are fertilized by the male the moment they are deposited in his brood pouch. Embryos are then incubated throughout their entire gestation period, which varies depending upon genus and species, in the paternal brood pouch (Gill, 1905; Hubbs, 1943; Breder and Rosen, 1966). -
Fishes of Terengganu East Coast of Malay Peninsula, Malaysia Ii Iii
i Fishes of Terengganu East coast of Malay Peninsula, Malaysia ii iii Edited by Mizuki Matsunuma, Hiroyuki Motomura, Keiichi Matsuura, Noor Azhar M. Shazili and Mohd Azmi Ambak Photographed by Masatoshi Meguro and Mizuki Matsunuma iv Copy Right © 2011 by the National Museum of Nature and Science, Universiti Malaysia Terengganu and Kagoshima University Museum All rights reserved. No part of this publication may be reproduced or transmitted in any form or by any means without prior written permission from the publisher. Copyrights of the specimen photographs are held by the Kagoshima Uni- versity Museum. For bibliographic purposes this book should be cited as follows: Matsunuma, M., H. Motomura, K. Matsuura, N. A. M. Shazili and M. A. Ambak (eds.). 2011 (Nov.). Fishes of Terengganu – east coast of Malay Peninsula, Malaysia. National Museum of Nature and Science, Universiti Malaysia Terengganu and Kagoshima University Museum, ix + 251 pages. ISBN 978-4-87803-036-9 Corresponding editor: Hiroyuki Motomura (e-mail: [email protected]) v Preface Tropical seas in Southeast Asian countries are well known for their rich fish diversity found in various environments such as beautiful coral reefs, mud flats, sandy beaches, mangroves, and estuaries around river mouths. The South China Sea is a major water body containing a large and diverse fish fauna. However, many areas of the South China Sea, particularly in Malaysia and Vietnam, have been poorly studied in terms of fish taxonomy and diversity. Local fish scientists and students have frequently faced difficulty when try- ing to identify fishes in their home countries. During the International Training Program of the Japan Society for Promotion of Science (ITP of JSPS), two graduate students of Kagoshima University, Mr. -
THE FAMILY SYNGNATHIDAE (PISCES: SYNGNATHIFORMES) of Taiwanl
Bull. Inst. Zool., Academia Sinica 22(1): 67-82 (1983) THE FAMILY SYNGNATHIDAE (PISCES: SYNGNATHIFORMES) OF TAIWANl SIN-CHE LEE Institlile of Zoology, Academia Sinica, Taipei, Taiwan lI5t Republic of China (Received October 12, 1982) Sin-Che Lee (1983) The family Syngnathidae (Pisces: Syngnathiformes) of Tai wan. Bull. Inst. Zool., Academia Sinica 22(1): 67-82. A systematic review of the syn gnathid fishes found in the waters of Taiwan and its adjacent islands documents a total of 22 species in 16 genera. Among them,. Dunckerocampus dactyliophorus, Coelo notus liaspis, Halicampus koilomatodon, Microphis manadensis, Hippichthys heptagon us, H. spidfer, Syngnathus pelagicus, Corythoichthys f!avofasdatus, Solegnathus hardwickii, Haliichthys taeniophorous and Hippocampus erinaceus are new records for the Taiwan area. A family diagnosis. key to genera and species, brief synonyms, diagnosis, remarks and illustrations of each species are given. trimaculatus and both H. kelloggi and H. atteri The syngnathids including the pipefishes mus are synonyms of H. kuda. Solegnathus and seahorses are small fishes of tropical and guntheri and Syngnathus argyristictus are pro moderately warm temperate shallow coastal visionally removed from the list since no· data waters. Seahorses are more highly specialized are available. Thus only 8 valid species are than pipefishes but most seahorses are confined remained in Chen's list of Taiwan syngnathids. to marine waters and restricted to particular Neverthless, after a period of intensive collec habitat. On the other hand pipefishes have a tion the present author has found 13 addi wider distribution; they can tolerate greater fional species making a total 21 syngnathid temperature and salinity ranges. -
Teleostei, Syngnathidae)
ZooKeys 934: 141–156 (2020) A peer-reviewed open-access journal doi: 10.3897/zookeys.934.50924 RESEARCH ARTICLE https://zookeys.pensoft.net Launched to accelerate biodiversity research Hippocampus nalu, a new species of pygmy seahorse from South Africa, and the first record of a pygmy seahorse from the Indian Ocean (Teleostei, Syngnathidae) Graham Short1,2,3, Louw Claassens4,5,6, Richard Smith4, Maarten De Brauwer7, Healy Hamilton4,8, Michael Stat9, David Harasti4,10 1 Research Associate, Ichthyology, Australian Museum Research Institute, Sydney, Australia 2 Ichthyology, California Academy of Sciences, San Francisco, USA 3 Ichthyology, Burke Museum, Seattle, USA 4 IUCN Seahorse, Pipefish Stickleback Specialist Group, University of British Columbia, Vancouver, Canada5 Rhodes University, Grahamstown, South Africa 6 Knysna Basin Project, Knysna, South Africa 7 University of Leeds, Leeds, UK 8 NatureServe, Arlington, Virginia, USA 9 University of Newcastle, Callaghan, NSW, Australia 10 Port Stephens Fisheries Institute, NSW, Australia Corresponding author: Graham Short ([email protected]) Academic editor: Nina Bogutskaya | Received 13 February 2020 | Accepted 12 April 2020 | Published 19 May 2020 http://zoobank.org/E9104D84-BB71-4533-BB7A-2DB3BD4E4B5E Citation: Short G, Claassens L, Smith R, De Brauwer M, Hamilton H, Stat M, Harasti D (2020) Hippocampus nalu, a new species of pygmy seahorse from South Africa, and the first record of a pygmy seahorse from the Indian Ocean (Teleostei, Syngnathidae). ZooKeys 934: 141–156. https://doi.org/10.3897/zookeys.934.50924 Abstract A new species and the first confirmed record of a true pygmy seahorse from Africa,Hippocampus nalu sp. nov., is herein described on the basis of two specimens, 18.9–22 mm SL, collected from flat sandy coral reef at 14–17 meters depth from Sodwana Bay, South Africa. -
Early Life History of Syngnathus Abaster
Journal of Fish Biology (2006) 68, 80–86 doi:10.1111/j.1095-8649.2005.00878.x,availableonlineathttp://www.blackwell-synergy.com Early life history of Syngnathus abaster K. SILVA*†‡, N. M. MONTEIRO*†, V. C. ALMADA§ AND M. N. VIEIRA*† *Departamento de Zoologia e Antropologia da Faculdade de Cieˆncias da Universidade do Porto, Prac¸ a Gomes Teixeira, 4099-002 Porto, Portugal,†CIIMAR, Rua dos Bragas 177, 4050-123 Porto, Portugal and §ISPA, Rua Jardim do Tabaco 34, 1149-041 Lisboa, Portugal (Received 2 February 2005, Accepted 15 June 2005) The embryonic and larval development of the pipefish Syngnathus abaster is described, based on ex situ observations. The full development sequence lasted 24–32 days (at 18–19 C), which was shortened to 21 days at higher temperatures (21–22 C). Newborn juveniles, with a uniform dark brown colouration, immediately assumed a benthic spatial distribution. This vertical distribution pattern remained unchanged at least during the first 4 weeks, after the release from the marsupium. The apparent absence of a pelagic life phase might have important repercussions in terms of population connectivity given increasing fragmentation and degrada- tion of the eelgrass habitat in the species’ range. # 2006 The Fisheries Society of the British Isles INTRODUCTION The Syngnathidae (pipefishes, pipehorses, seadragons and seahorses) exhibits one of the most specialized forms of parental care, with females depositing eggs in a specialized incubating area, located either on the abdomen (Gastrophori) or tail (Urophori) of the males (Herald, 1959). Even though male pregnancy is a widespread characteristic in all syngnathids, the anatomical complexity of the brooding structures varies among species, from the simplest incubating ventral surface of the Nerophinae, where eggs are glued without any protective plates or membranes, to the Hippocampinae sealed brood pouch. -
Reproductive Biology of the Opossum Pipefish, Microphis Brachyurus Lineatus, in Tecolutla Estuary, Veracruz, Mexico
Gulf and Caribbean Research Volume 16 Issue 1 January 2004 Reproductive Biology of the Opossum Pipefish, Microphis brachyurus lineatus, in Tecolutla Estuary, Veracruz, Mexico Martha Edith Miranda-Marure Universidad Nacional Autonoma de Mexico Jose Antonio Martinez-Perez Universidad Nacional Autonoma de Mexico Nancy J. Brown-Peterson University of Southern Mississippi, [email protected] Follow this and additional works at: https://aquila.usm.edu/gcr Part of the Marine Biology Commons Recommended Citation Miranda-Marure, M. E., J. A. Martinez-Perez and N. J. Brown-Peterson. 2004. Reproductive Biology of the Opossum Pipefish, Microphis brachyurus lineatus, in Tecolutla Estuary, Veracruz, Mexico. Gulf and Caribbean Research 16 (1): 101-108. Retrieved from https://aquila.usm.edu/gcr/vol16/iss1/17 DOI: https://doi.org/10.18785/gcr.1601.17 This Article is brought to you for free and open access by The Aquila Digital Community. It has been accepted for inclusion in Gulf and Caribbean Research by an authorized editor of The Aquila Digital Community. For more information, please contact [email protected]. Gulf and Caribbean Research Vol 16, 101–108, 2004 Manuscript received September 25, 2003; accepted December 12, 2003 REPRODUCTIVE BIOLOGY OF THE OPOSSUM PIPEFISH, MICROPHIS BRACHYURUS LINEATUS, IN TECOLUTLA ESTUARY, VERACRUZ, MEXICO Martha Edith Miranda-Marure, José Antonio Martínez-Pérez, and Nancy J. Brown-Peterson1 Laboratorio de Zoología, Universidad Nacional Autónoma de México, Facultad de Estudios Superiores Iztacala. Av., de los Barrios No.1, Los Reyes Iztacala, Tlalnepantla, Estado de México, C.P. 05490 Mexico 1Department of Coastal Sciences, The University of Southern Mississippi, 703 East Beach Drive, Ocean Springs, MS 39564 USA ABSTRACT The reproductive biology of the opossum pipefish, Microphis brachyurus lineatus, was investigated in Tecolutla estuary, Veracruz, Mexico, to determine sex ratio, size at maturity, gonadal and brood pouch histology, reproductive seasonality, and fecundity of this little-known syngnathid. -
Order GASTEROSTEIFORMES PEGASIDAE Eurypegasus Draconis
click for previous page 2262 Bony Fishes Order GASTEROSTEIFORMES PEGASIDAE Seamoths (seadragons) by T.W. Pietsch and W.A. Palsson iagnostic characters: Small fishes (to 18 cm total length); body depressed, completely encased in Dfused dermal plates; tail encircled by 8 to 14 laterally articulating, or fused, bony rings. Nasal bones elongate, fused, forming a rostrum; mouth inferior. Gill opening restricted to a small hole on dorsolat- eral surface behind head. Spinous dorsal fin absent; soft dorsal and anal fins each with 5 rays, placed posteriorly on body. Caudal fin with 8 unbranched rays. Pectoral fins large, wing-like, inserted horizon- tally, composed of 9 to 19 unbranched, soft or spinous-soft rays; pectoral-fin rays interconnected by broad, transparent membranes. Pelvic fins thoracic, tentacle-like,withI spine and 2 or 3 unbranched soft rays. Colour: in life highly variable, apparently capable of rapid colour change to match substrata; head and body light to dark brown, olive-brown, reddish brown, or almost black, with dorsal and lateral surfaces usually darker than ventral surface; dorsal and lateral body surface often with fine, dark brown reticulations or mottled lines, sometimes with irregular white or yellow blotches; tail rings often encircled with dark brown bands; pectoral fins with broad white outer margin and small brown spots forming irregular, longitudinal bands; unpaired fins with small brown spots in irregular rows. dorsal view lateral view Habitat, biology, and fisheries: Benthic, found on sand, gravel, shell-rubble, or muddy bottoms. Collected incidentally by seine, trawl, dredge, or shrimp nets; postlarvae have been taken at surface lights at night. -
The Genome of the Gulf Pipefish Enables Understanding of Evolutionary Innovations C
Small et al. Genome Biology (2016) 17:258 DOI 10.1186/s13059-016-1126-6 RESEARCH Open Access The genome of the Gulf pipefish enables understanding of evolutionary innovations C. M. Small1†, S. Bassham1†, J. Catchen1,2†, A. Amores3, A. M. Fuiten1, R. S. Brown1,4, A. G. Jones5 and W. A. Cresko1* Abstract Background: Evolutionary origins of derived morphologies ultimately stem from changes in protein structure, gene regulation, and gene content. A well-assembled, annotated reference genome is a central resource for pursuing these molecular phenomena underlying phenotypic evolution. We explored the genome of the Gulf pipefish (Syngnathus scovelli), which belongs to family Syngnathidae (pipefishes, seahorses, and seadragons). These fishes have dramatically derived bodies and a remarkable novelty among vertebrates, the male brood pouch. Results: We produce a reference genome, condensed into chromosomes, for the Gulf pipefish. Gene losses and other changes have occurred in pipefish hox and dlx clusters and in the tbx and pitx gene families, candidate mechanisms for the evolution of syngnathid traits, including an elongated axis and the loss of ribs, pelvic fins, and teeth. We measure gene expression changes in pregnant versus non-pregnant brood pouch tissue and characterize the genomic organization of duplicated metalloprotease genes (patristacins) recruited into the function of this novel structure. Phylogenetic inference using ultraconserved sequences provides an alternative hypothesis for the relationship between orders Syngnathiformes and Scombriformes. Comparisons of chromosome structure among percomorphs show that chromosome number in a pipefish ancestor became reduced via chromosomal fusions. Conclusions: The collected findings from this first syngnathid reference genome open a window into the genomic underpinnings of highly derived morphologies, demonstrating that de novo production of high quality and useful reference genomes is within reach of even small research groups. -
Reef Fishes of the Bird's Head Peninsula, West
Check List 5(3): 587–628, 2009. ISSN: 1809-127X LISTS OF SPECIES Reef fishes of the Bird’s Head Peninsula, West Papua, Indonesia Gerald R. Allen 1 Mark V. Erdmann 2 1 Department of Aquatic Zoology, Western Australian Museum. Locked Bag 49, Welshpool DC, Perth, Western Australia 6986. E-mail: [email protected] 2 Conservation International Indonesia Marine Program. Jl. Dr. Muwardi No. 17, Renon, Denpasar 80235 Indonesia. Abstract A checklist of shallow (to 60 m depth) reef fishes is provided for the Bird’s Head Peninsula region of West Papua, Indonesia. The area, which occupies the extreme western end of New Guinea, contains the world’s most diverse assemblage of coral reef fishes. The current checklist, which includes both historical records and recent survey results, includes 1,511 species in 451 genera and 111 families. Respective species totals for the three main coral reef areas – Raja Ampat Islands, Fakfak-Kaimana coast, and Cenderawasih Bay – are 1320, 995, and 877. In addition to its extraordinary species diversity, the region exhibits a remarkable level of endemism considering its relatively small area. A total of 26 species in 14 families are currently considered to be confined to the region. Introduction and finally a complex geologic past highlighted The region consisting of eastern Indonesia, East by shifting island arcs, oceanic plate collisions, Timor, Sabah, Philippines, Papua New Guinea, and widely fluctuating sea levels (Polhemus and the Solomon Islands is the global centre of 2007). reef fish diversity (Allen 2008). Approximately 2,460 species or 60 percent of the entire reef fish The Bird’s Head Peninsula and surrounding fauna of the Indo-West Pacific inhabits this waters has attracted the attention of naturalists and region, which is commonly referred to as the scientists ever since it was first visited by Coral Triangle (CT).