Hybridization Occurs Between Drosophila Simulans and D
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Polymorphism and Divergence of Novel Gene Expression Patterns in Drosophila Melanogaster
HIGHLIGHTED ARTICLE | INVESTIGATION Polymorphism and Divergence of Novel Gene Expression Patterns in Drosophila melanogaster Julie M. Cridland,1 Alex C. Majane, Hayley K. Sheehy, and David J. Begun Department of Evolution and Ecology, University of California, Davis, California 95616 ABSTRACT Transcriptomes may evolve by multiple mechanisms, including the evolution of novel genes, the evolution of transcript abundance, and the evolution of cell, tissue, or organ expression patterns. Here, we focus on the last of these mechanisms in an investigation of tissue and organ shifts in gene expression in Drosophila melanogaster. In contrast to most investigations of expression evolution, we seek to provide a framework for understanding the mechanisms of novel expression patterns on a short population genetic timescale. To do so, we generated population samples of D. melanogaster transcriptomes from five tissues: accessory gland, testis, larval salivary gland, female head, and first-instar larva. We combined these data with comparable data from two outgroups to characterize gains and losses of expression, both polymorphic and fixed, in D. melanogaster. We observed a large number of gain- or loss-of-expression phenotypes, most of which were polymorphic within D. melanogaster. Several polymorphic, novel expression phenotypes were strongly influenced by segregating cis-acting variants. In support of previous literature on the evolution of novelties functioning in male reproduction, we observed many more novel expression phenotypes in the testis and accessory gland than in other tissues. Additionally, genes showing novel expression phenotypes tend to exhibit greater tissue-specific expression. Finally, in addition to qualitatively novel expression phenotypes, we identified genes exhibiting major quantitative expression divergence in the D. -
Evaluating the Role of Natural Selection in the Evolution of Gene Regulation
Heredity (2008) 100, 191–199 & 2008 Nature Publishing Group All rights reserved 0018-067X/08 $30.00 www.nature.com/hdy SHORT REVIEW Evaluating the role of natural selection in the evolution of gene regulation JC Fay1 and PJ Wittkopp2 1Department of Genetics, Washington University School of Medicine, St Louis, MO, USA and 2Department of Ecology and Evolutionary Biology and Department of Molecular, Cellular, and Developmental Biology, University of Michigan, Ann Arbor, MI, USA Surveys of gene expression reveal extensive variability both also discuss properties of regulatory systems relevant to within and between a wide range of species. Compelling neutral models of gene expression. Despite some potential cases have been made for adaptive changes in gene caveats, published studies provide considerable evidence for regulation, but the proportion of expression divergence adaptive changes in gene expression. Future challenges for attributable to natural selection remains unclear. Distinguish- studies of regulatory evolution will be to quantify the ing adaptive changes driven by positive selection from frequency of adaptive changes, identify the genetic basis of neutral divergence resulting from mutation and genetic drift expression divergence and associate changes in gene is critical for understanding the evolution of gene expression. expression with specific organismal phenotypes. Here, we review the various methods that have been used to Heredity (2008) 100, 191–199; doi:10.1038/sj.hdy.6801000; test for signs of selection in genomic expression -
Wolbachia, Normally a Symbiont of Drosophila, Can Be Virulent, Causing Degeneration and Early Death (Symbiosis͞microbial Infection͞parasite͞rickettsia͞life-Span)
Proc. Natl. Acad. Sci. USA Vol. 94, pp. 10792–10796, September 1997 Genetics Wolbachia, normally a symbiont of Drosophila, can be virulent, causing degeneration and early death (symbiosisymicrobial infectionyparasiteyRickettsiaylife-span) KYUNG-TAI MIN AND SEYMOUR BENZER* Division of Biology 156-29, California Institute of Technology, Pasadena, CA 91125 Contributed by Seymour Benzer, July 21, 1997 ABSTRACT Wolbachia, a maternally transmitted micro- tions pose the question of what bacterium–host interactions are organism of the Rickettsial family, is known to cause cyto- at play. Therefore it would be desirable to have a system for plasmic incompatibility, parthenogenesis, or feminization in genetic analysis of these interactions. various insect species. The bacterium–host relationship is usually symbiotic: incompatibility between infected males and MATERIALS AND METHODS uninfected females can enhance reproductive isolation and evolution, whereas the other mechanisms enhance progeny Electron Microscopy (EM) and Immunohistochemistry. Flies production. We have discovered a variant Wolbachia carried were prepared by fixation in 1% paraformaldehyde, 1% glutar- by Drosophila melanogaster in which this cozy relationship is aldehyde, postfixation in 1% osmium tetroxide, dehydration in an abrogated. Although quiescent during the fly’s development, ethanol series, and embedding in Epon 812. For EM, ultrathin it begins massive proliferation in the adult, causing wide- sections (80 nm) were examined with a Philips 201 electron spread degeneration of tissues, including brain, retina, and microscope at 60 kV. Cryostat sections (10 mm) of fly ovaries muscle, culminating in early death. Tetracycline treatment of were stained with Wolbachia-specific monoclonal antibody (18) carrier flies eliminates both the bacteria and the degenera- and visualized with Cy3-conjugated mouse secondary antibody. -
Dynamics of Double and Single Wolbachia Infections in Drosophila Simulans from New Caledonia
Heredity (2002) 88, 182–189 2002 Nature Publishing Group All rights reserved 0018-067X/02 $25.00 www.nature.com/hdy Dynamics of double and single Wolbachia infections in Drosophila simulans from New Caledonia AC James1, MD Dean1,2,3, ME McMahon2 and JWO Ballard1,2 1Department of Biology, University of Iowa, Iowa City, Iowa 52242, USA; 2The Field Museum, 1400 South Lake Shore Drive, Chicago, IL 60605, USA; 3The University of Illinois-Chicago, 845 W. Taylor Street, Chicago, IL 60607, USA The bacterial symbiont Wolbachia can cause cytoplasmic either the DNA of these bacterial isolates have diverged from incompatibility in Drosophila simulans flies: if an infected those previously collected, or the genetic background of the male mates with an uninfected female, or a female with a host has lead to a reduction in the phenotype of incompati- different strain of Wolbachia, there can be a dramatic bility. Mitochondrial sequence polymorphism at two sites reduction in the number of viable eggs produced. Here we within the host genome was assayed to investigate popu- explore the dynamics associated with double and single lation structure related to infection types. There was no cor- Wolbachia infections in New Caledonia. Doubly infected relation between sequence polymorphism and infection type females were compatible with all males in the population, suggesting that double infections are the stable type, with explaining the high proportion of doubly infected flies. In this singly infected and uninfected flies arising from stochastic study, males that carry only wHa or wNo infections showed segregation of bacterial strains. Finally, we discuss the reduced incompatibility when mated to uninfected females, nomenclature of Wolbachia strain designation. -
Genome Divergence and Gene Flow Between Drosophila Simulans And
bioRxiv preprint doi: https://doi.org/10.1101/024711; this version posted August 14, 2015. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-ND 4.0 International license. Genome divergence and gene flow between Drosophila simulans and D. mauritiana Sarah B. Kingan, Anthony J. Geneva, Jeffrey P. Vedanayagam, and Daniel Garrigan Department of Biology, University of Rochester, Rochester, New York 1 bioRxiv preprint doi: https://doi.org/10.1101/024711; this version posted August 14, 2015. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-ND 4.0 International license. Running title: Gene flow between allopatric Drosophila Key words: Drosophila; genome; introgression, speciation Corresponding author: Daniel Garrigan Department of Biology University of Rochester Rochester, New York 14627 Phone: +1-585-276-4816 Email: [email protected] 2 bioRxiv preprint doi: https://doi.org/10.1101/024711; this version posted August 14, 2015. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-ND 4.0 International license. ABSTRACT The fruit fly Drosophila simulans and its sister species D. mauritiana are a model system for studying the genetic basis of reproductive isolation, primarily because interspecific crosses produce sterile hybrid males and their phylogenetic proximity to D. -
Drosophila Melanogaster and D. Simulans Rescue Strains Produce Fit
Heredity (2003) 91, 28–35 & 2003 Nature Publishing Group All rights reserved 0018-067X/03 $25.00 www.nature.com/hdy Drosophila melanogaster and D. simulans rescue strains produce fit offspring, despite divergent centromere-specific histone alleles A Sainz1,3, JA Wilder2,3, M Wolf2 and H Hollocher1 1Department of Biological Sciences, University of Notre Dame, Notre Dame, IN 46556, USA; 2Department of Ecology and Evolutionary Biology, Princeton University, Princeton, NJ 08544, USA The interaction between rapidly evolving centromere se- identifier proteins provide a barrier to reproduction remains quences and conserved kinetochore machinery appears to unknown. Interestingly, a small number of rescue lines from be mediated by centromere-binding proteins. A recent theory both D. melanogaster and D. simulans can restore hybrid proposes that the independent evolution of centromere- fitness. Through comparisons of cid sequence between binding proteins in isolated populations may be a universal nonrescue and rescue strains, we show that cid is not cause of speciation among eukaryotes. In Drosophila the involved in restoring hybrid viability or female fertility. Further, centromere-specific histone, Cid (centromere identifier), we demonstrate that divergent cid alleles are not sufficient to shows extensive sequence divergence between D. melano- cause inviability or female sterility in hybrid crosses. Our data gaster and the D. simulans clade, indicating that centromere do not dispute the rapid divergence of cid or the coevolution machinery incompatibilities may indeed be involved in of centromeric components in Drosophila; however, they reproductive isolation and speciation. However, it is presently do suggest that cid underwent adaptive evolution after unclear whether the adaptive evolution of Cid was a cause of D. -
Wolbachia Infections Are Distributed Throughout Insect Somatic and Germ Line Tissues Stephen L
Insect Biochemistry and Molecular Biology 29 (1999) 153–160 Wolbachia infections are distributed throughout insect somatic and germ line tissues Stephen L. Dobson1, a, Kostas Bourtzis a, b, Henk R. Braig 2, a, Brian F. Jones a, Weiguo Zhou3, a, Franc¸ois Rousset a, c, Scott L. O’Neill a,* a Section of Vector Biology, Department of Epidemiology and Public Health, Yale University School of Medicine, New Haven, CT 06520, USA b Insect Molecular Genetics Group, Institute of Molecular Biology and Biotechnology, Foundation for Research and Technology—Hellas, Heraklion, Crete, Greece c Laboratoire Ge´ne´tique et Environnement, Institut des Sciences de l’Evolution, Universite´ de Montpellier II, 34095 Montpellier, France Received 8 April 1998; received in revised form 2 November 1998; accepted 3 November 1998 Abstract Wolbachia are intracellular microorganisms that form maternally-inherited infections within numerous arthropod species. These bacteria have drawn much attention, due in part to the reproductive alterations that they induce in their hosts including cytoplasmic incompatibility (CI), feminization and parthenogenesis. Although Wolbachia’s presence within insect reproductive tissues has been well described, relatively few studies have examined the extent to which Wolbachia infects other tissues. We have examined Wolbachia tissue tropism in a number of representative insect hosts by western blot, dot blot hybridization and diagnostic PCR. Results from these studies indicate that Wolbachia are much more widely distributed in host tissues than previously appreciated. Furthermore, the distribution of Wolbachia in somatic tissues varied between different Wolbachia/host associations. Some associ- ations showed Wolbachia disseminated throughout most tissues while others appeared to be much more restricted, being predomi- nantly limited to the reproductive tissues. -
Wolbachia in the Drosophila Yakuba Complex: Pervasive Frequency Variation and Weak Cytoplasmic Incompatibility, but No Apparent Effect on Reproductive Isolation
| INVESTIGATION Wolbachia in the Drosophila yakuba Complex: Pervasive Frequency Variation and Weak Cytoplasmic Incompatibility, but No Apparent Effect on Reproductive Isolation Brandon S. Cooper,*,1 Paul S. Ginsberg,* Michael Turelli,* and Daniel R. Matute† *Department of Evolution and Ecology, Center for Population Biology, University of California, Davis, California 95616 and †Biology Department, University of North Carolina, Chapel Hill, North Carolina 27510 ORCID IDs: 0000-0002-8269-7731 (B.S.C.); 0000-0003-1188-9856 (M.T.); 0000-0002-7597-602X (D.R.M.) ABSTRACT Three hybridizing species—the clade [(Drosophila yakuba, D. santomea), D. teissieri]—comprise the yakuba complex in the D. melanogaster subgroup. Their ranges overlap on Bioko and São Tomé, islands off west Africa. All three species are infected with Wolbachia—maternally inherited, endosymbiotic bacteria, best known for manipulating host reproduction to favor infected females. Previous analyses reported no cytoplasmic incompatibility (CI) in these species. However, we discovered that Wolbachia from each species cause intraspecific and interspecific CI. In D. teissieri, analyses of F1 and backcross genotypes show that both host genotype and Wolbachia variation modulate CI intensity. Wolbachia-infected females seem largely protected from intraspecific and interspecific CI, irrespective of Wolbachia and host genotypes. Wolbachia do not affect host mating behavior or female fecundity, within or between species. The latter suggests little apparent effect of Wolbachia on premating or gametic reproductive isolation (RI) between host species. In nature, Wolbachia frequencies varied spatially for D. yakuba in 2009, with 76% (N = 155) infected on São Tomé, and only 3% (N = 36) infected on Bioko; frequencies also varied temporally in D. -
Thomas Hunt Morgan
NATIONAL ACADEMY OF SCIENCES T HOMAS HUNT M ORGAN 1866—1945 A Biographical Memoir by A. H . S TURTEVANT Any opinions expressed in this memoir are those of the author(s) and do not necessarily reflect the views of the National Academy of Sciences. Biographical Memoir COPYRIGHT 1959 NATIONAL ACADEMY OF SCIENCES WASHINGTON D.C. THOMAS HUNT MORGAN September 25, 1866-December 4, 1945 BY A. H. STURTEVANT HOMAS HUNT MORGAN was born September 25, 1866, at Lexing- Tton, Kentucky, the son of Charlton Hunt Morgan and Ellen Key (Howard) Morgan. In 1636 the two brothers James Morgan and Miles Morgan came to Boston from Wales. Thomas Hunt Morgan's line derives from James; from Miles descended J. Pierpont Morgan. While the rela- tionship here is remote, geneticists will recognize that a common Y chromosome is indicated. The family lived in New England^ mostly in Connecticut—until about 1800, when Gideon Morgan moved to Tennessee. His son, Luther, later settled at Huntsville, Alabama. This Luther Morgan was the grandfather of Charlton Hunt Morgan; the latter's mother (Thomas Hunt Morgan's grand- mother) was Henrietta Hunt, of Lexington, whose father, John Wesley Hunt, came from Trenton, New Jersey, and was one of the early settlers at Lexington, where he became a hemp manufacturer. Ellen Key Howard was from an old aristocratic family of Baltimore, Maryland. Her two grandfathers were John Eager Howard (Colonel in the Revolutionary Army, Governor of Maryland from 1788 to 1791) and Francis Scott Key (author of "The Star-spangled Ban- ner"). Thomas Hunt Morgan's parents were related, apparently as third cousins. -
Physical and Chemical Barriers in the Larval Midgut Confer Developmental Resistance to Virus Infection in Drosophila
viruses Article Physical and Chemical Barriers in the Larval Midgut Confer Developmental Resistance to Virus Infection in Drosophila Simon Villegas-Ospina , David J. Merritt and Karyn N. Johnson * Faculty of Science, School of Biological Sciences, The University of Queensland, Brisbane 4072, Australia; [email protected] (S.V.-O.); [email protected] (D.J.M.) * Correspondence: [email protected] Abstract: Insects can become lethally infected by the oral intake of a number of insect-specific viruses. Virus infection commonly occurs in larvae, given their active feeding behaviour; however, older larvae often become resistant to oral viral infections. To investigate mechanisms that contribute to resistance throughout the larval development, we orally challenged Drosophila larvae at different stages of their development with Drosophila C virus (DCV, Dicistroviridae). Here, we showed that DCV-induced mortality is highest when infection initiates early in larval development and decreases the later in development the infection occurs. We then evaluated the peritrophic matrix as an antiviral barrier within the gut using a Crystallin-deficient fly line (Crys−/−), whose PM is weakened and becomes more permeable to DCV-sized particles as the larva ages. This phenotype correlated with increasing mortality the later in development oral challenge occurred. Lastly, we tested in vitro the infectivity of DCV after incubation at pH conditions that may occur in the midgut. DCV virions were stable in a pH range between 3.0 and 10.5, but their infectivity decreased at least 100-fold below (1.0) and above (12.0) this range. We did not observe such acidic conditions in recently hatched larvae. -
A Phylogenetic Study of the Family Tephritidae (Insecta: Diptera) Using a Mitochondrial DNA Sequence
Proceedings of 6th International Fruit Fly Symposium 6–10 May 2002, Stellenbosch, South Africa pp. 439–443 A phylogenetic study of the family Tephritidae (Insecta: Diptera) using a mitochondrial DNA sequence P. Fernández, D. Segura, C. Callejas & M.D. Ochando* Departamento de Genética, Facultad de Ciencias Biológicas, Universidad Complutense, 28040 – Madrid, Spain Achievements in tephritid taxonomy have greatly contributed to both basic research and pest management programmes. However, despite the large amount of taxonomic data available, the higher classification of the family Tephritidae is still a matter of debate. A molecular approach could help to provide a more accurate classification. A molecular study was therefore undertaken to gain insight into the phylogenetic relationships within the family Tephritidae. A DNA region of the mitochondrial cytochrome oxidase II gene was compared in species representing six genera of the family, namely Ceratitis, Rhagoletis, Dacus, Bactrocera, Anastrepha and Toxotrypana. A dendrogram was constructed using the neighbour-joining method with Liriomyza huidobrensis and Drosophila yakuba as outgroups. Two main clusters were obtained in the tree, the first grouping being the Ceratitis species, C. capitata, C. rosa, and C. cosyra, and the second showing two main branches, one for Dacus, Bactrocera and Rhagoletis, and the other for Anastrepha and Toxotrypana. The results are discussed in relation to published phylogenies. INTRODUCTION a better understanding of the phylogenetic rela- Among the most devastating of agricultural tionships within the Tephritidae family (Han & pests, the family Tephritidae, commonly known as McPheron 1994, 1997, 2001; Malacrida et al. 1996; fruit flies, includes more than 4000 species in McPheron & Han 1997; Smith & Bush 1997; some 500 genera distributed all around the world Morrow et al. -
Interspecific Y Chromosome Introgressions Disrupt Testis-Specific Gene Expression and Male Reproductive Phenotypes in Drosophila
Interspecific Y chromosome introgressions disrupt testis-specific gene expression and male reproductive phenotypes in Drosophila Timothy B. Sackton1, Horacio Montenegro, Daniel L. Hartl1, and Bernardo Lemos1,2 Department of Organismic and Evolutionary Biology, Harvard University, Cambridge, MA 02138 Contributed by Daniel L. Hartl, September 7, 2011 (sent for review August 22, 2011) The Drosophila Y chromosome is a degenerated, heterochromatic latory variation (YRV). Collectively, these genes are more likely chromosome with few functional genes. Nonetheless, natural var- to be male-biased in expression and to diverge in expression iation on the Y chromosome in Drosophila melanogaster has sub- between species (25), and are likely mediated at least in part by stantial trans-acting effects on the regulation of X-linked and variation in rDNA sequence on the Y chromosome (28). autosomal genes. However, the contribution of Y chromosome Over longer time scales, empirical results suggest the Y chro- divergence to gene expression divergence between species is un- mosome is evolutionarily dynamic. Gene content on the Y chro- known. In this study, we constructed a series of Y chromosome mosome has changed dramatically during the course of Drosophila introgression lines, in which Y chromosomes from either Drosoph- evolution: only 3 of the 12 Y-linked genes in D. melanogaster that ila sechellia or Drosophila simulans are introgressed into a common have been studied carefully are Y-linked in all 10 sequenced D. simulans genetic background. Using these lines, we compared Drosophila genomes with homologous Y chromosomes (3). Ad- genome-wide gene expression and male reproductive phenotypes ditionally, at least part of the Y-linked gene kl-2 appears to have between heterospecific and conspecific Y chromosomes.