PFKFB4 Interference Regulates Mitochondrial Membrane Fusion
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Oncorequisite Role of an Aldehyde Dehydrogenase in the Pathogenesis of T-Cell Acute Lymphoblastic Leukemia
Acute Lymphoblastic Leukemia SUPPLEMENTARY APPENDIX Oncorequisite role of an aldehyde dehydrogenase in the pathogenesis of T-cell acute lymphoblastic leukemia Chujing Zhang, 1 Stella Amanda, 1 Cheng Wang, 2 Tze King Tan, 1 Muhammad Zulfaqar Ali, 1 Wei Zhong Leong, 1 Ley Moy Ng, 1 Shojiro Kitajima, 3 Zhenhua Li, 4 Allen Eng Juh Yeoh, 1,4 Shi Hao Tan 1 and Takaomi Sanda 1,5 1Cancer Science Institute of Singapore, National University of Singapore, Singapore; 2Department of Anatomy, National University of Singapore, Singapore; 3Institute for Advanced Biosciences, Keio University, Tsuruoka, Japan; 4VIVA-NUS CenTRAL, Department of Pedi - atrics, National University of Singapore, Singapore and 5Department of Medicine, Yong Loo Lin School of Medicine, National University of Singapore, Singapore. ©2021 Ferrata Storti Foundation. This is an open-access paper. doi:10.3324/haematol. 2019.245639 Received: December 18, 2019. Accepted: May 14, 2020. Pre-published: May 15, 2020. Correspondence: TAKAOMI SANDA - [email protected] Zhang et al Roles of ALDH in T-ALL Supplementary Information Supplementary Materials and Methods Cell culture and reagents All human leukemia cell lines were cultured in RPMI-1640 medium (BioWest) supplemented with 10% FBS (BioWest). 293T cells were maintained in DMEM medium (BioWest) supplemented with 10% FBS and penicillin/streptomycin (Life Technologies). All-trans retinaldehyde was purchased from Sigma-Aldrich. Glucose free and Glutamine free RPMI- 1640 media were purchased from ThermoFisher. Patient derived xenograft (PDX) sample T-ALL patient-derived PDX sample (DFCI15) was kindly provided by Alejandro Gutierrez (Boston Children’s Hospital, Boston). Mouse studies were conducted according to the recommendations from the Institutional Animal Care and Use Committee (IACUC) and all protocols were approved by the Committee at the National University of Singapore (NUS). -
Emerging Roles of P53 Family Members in Glucose Metabolism
International Journal of Molecular Sciences Review Emerging Roles of p53 Family Members in Glucose Metabolism Yoko Itahana and Koji Itahana * Cancer and Stem Cell Biology Program, Duke-NUS Medical School, 8 College Road, Singapore 169857, Singapore; [email protected] * Correspondence: [email protected]; Tel.: +65-6516-2554; Fax: +65-6221-2402 Received: 19 January 2018; Accepted: 22 February 2018; Published: 8 March 2018 Abstract: Glucose is the key source for most organisms to provide energy, as well as the key source for metabolites to generate building blocks in cells. The deregulation of glucose homeostasis occurs in various diseases, including the enhanced aerobic glycolysis that is observed in cancers, and insulin resistance in diabetes. Although p53 is thought to suppress tumorigenesis primarily by inducing cell cycle arrest, apoptosis, and senescence in response to stress, the non-canonical functions of p53 in cellular energy homeostasis and metabolism are also emerging as critical factors for tumor suppression. Increasing evidence suggests that p53 plays a significant role in regulating glucose homeostasis. Furthermore, the p53 family members p63 and p73, as well as gain-of-function p53 mutants, are also involved in glucose metabolism. Indeed, how this protein family regulates cellular energy levels is complicated and difficult to disentangle. This review discusses the roles of the p53 family in multiple metabolic processes, such as glycolysis, gluconeogenesis, aerobic respiration, and autophagy. We also discuss how the dysregulation of the p53 family in these processes leads to diseases such as cancer and diabetes. Elucidating the complexities of the p53 family members in glucose homeostasis will improve our understanding of these diseases. -
6-Phosphofructo-2-Kinase/Fructose-2
Published OnlineFirst August 7, 2019; DOI: 10.1158/1078-0432.CCR-18-3448 Translational Cancer Mechanisms and Therapy Clinical Cancer Research 6-Phosphofructo-2-Kinase/Fructose-2,6- Biphosphatase-2 Regulates TP53-Dependent Paclitaxel Sensitivity in Ovarian and Breast Cancers Hailing Yang1, Zhang Shu1,2,Yongying Jiang3, Weiqun Mao1, Lan Pang1, Abena Redwood4, Sabrina L. Jeter-Jones4, Nicholas B. Jennings5, Argentina Ornelas6, Jinhua Zhou1, Cristian Rodriguez-Aguayo1,7, Geoffrey Bartholomeusz1, LaKesla R. Iles1, Niki M. Zacharias8, Steven W. Millward6, Gabriel Lopez-Berestein1,7, Xiao-Feng Le1, Ahmed A. Ahmed9,10, Helen Piwnica-Worms4, Anil K. Sood5,7, Robert C. Bast1, and Zhen Lu1 Abstract Purpose: Paclitaxel is an integral component of primary Results: Knockdown of PFKFB2 inhibited clonogenic therapy for breast and epithelial ovarian cancers, but less than growth and enhanced paclitaxel sensitivity in ovarian and half of these cancers respond to the drug. Enhancing the breast cancer cell lines with wild-type TP53 (wtTP53). response to primary therapy with paclitaxel could improve Silencing PFKFB2 significantly inhibited tumor growth and outcomes for women with both diseases. enhanced paclitaxel sensitivity in four xenografts derived Experimental Design: Twelve kinases that regulate from two ovarian and two breast cancer cell lines, and metabolism were depleted in multiple ovarian and breast prolonged survival in a triple-negative breast cancer PDX. cancer cell lines to determine whether they regulate sensi- Transfection of siPFKFB2 increased the glycolysis rate, but tivity to paclitaxel in Sulforhodamine B assays. The effects decreased the flow of intermediates through the pentose– of 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase phosphate pathway in cancer cells with wtTP53,decreasing 2(PFKFB2) depletion on cell metabolomics, extracellular NADPH. -
Identification and Validation of a Six-Gene Signature Associated With
Cai et al. BMC Cancer (2020) 20:1133 https://doi.org/10.1186/s12885-020-07598-3 RESEARCH ARTICLE Open Access Identification and validation of a six-gene signature associated with glycolysis to predict the prognosis of patients with cervical cancer Luya Cai1†, Chuan Hu2†, Shanshan Yu3, Lixiao Liu1, Xiaobo Yu1, Jiahua Chen1, Xuan Liu1, Fan Lin4, Cheng Zhang4, Wenfeng Li3 and Xiaojian Yan1* Abstract Background: Cervical cancer (CC) is one of the most common gynaecological cancers. The gene signature is believed to be reliable for predicting cancer patient survival. However, there is no relevant study on the relationship between the glycolysis-related gene (GRG) signature and overall survival (OS) of patients with CC. Methods: We extracted the mRNA expression profiles of 306 tumour and 13 normal tissues from the University of California Santa Cruz (UCSC) Database. Then, we screened out differentially expressed glycolysis-related genes (DEGRGs) among these mRNAs. All patients were randomly divided into training cohort and validation cohort according to the ratio of 7: 3. Next, univariate and multivariate Cox regression analyses were carried out to select the GRG with predictive ability for the prognosis of the training cohort. Additionally, risk score model was constructed and validated it in the validation cohort. Results: Six mRNAs were obtained that were associated with patient survival. The filtered mRNAs were classified into the protective type (GOT1) and the risk type (HSPA5, ANGPTL4, PFKM, IER3 and PFKFB4). Additionally, by constructing the prognostic risk score model, we found that the OS of the high-risk group was notably poorer, which showed good predictive ability both in training cohort and validation cohort. -
Glycolytic Reliance Promotes Anabolism in Photoreceptors
bioRxiv preprint doi: https://doi.org/10.1101/101964; this version posted January 21, 2017. The copyright holder for this preprint (which was not certified by peer review) is the author/funder. All rights reserved. No reuse allowed without permission. Glycolytic reliance promotes anabolism in photoreceptors Yashodhan Chinchore, Tedi Begaj, David Wu, Eugene Drokhlyansky, Constance L. Cepko* *Departments of Genetics and Ophthalmology, Howard Hughes Medical Institute, Harvard Medical School, Boston, Massachusetts 02115, USA [email protected] bioRxiv preprint doi: https://doi.org/10.1101/101964; this version posted January 21, 2017. The copyright holder for this preprint (which was not certified by peer review) is the author/funder. All rights reserved. No reuse allowed without permission. 1 Sensory neurons capture information from the environment and convert it 2 into signals that can greatly impact the survival of an organism. These systems 3 are thus under heavy selective pressure, including for the most efficient use of 4 energy to support their sensitivity and efficiency1. In this regard, the 5 vertebrate photoreceptor cells face a dual challenge. They not only need to 6 preserve their membrane excitability via ion pumps by ATP hydrolysis2 but 7 also maintain a highly membrane rich organelle, the outer segment, which is 8 the primary site of phototransduction, creating a considerable biosynthetic 9 demand. How photoreceptors manage carbon allocation to balance their 10 catabolic and anabolic demands is poorly understood. One metabolic feature 11 of the retina is its ability to convert the majority of its glucose into lactate3,4 12 even in the presence of oxygen. -
High Expression of Metabolic Enzyme PFKFB4 Is Associated with Poor
Yao et al. Cancer Cell Int (2019) 19:165 https://doi.org/10.1186/s12935-019-0882-2 Cancer Cell International PRIMARY RESEARCH Open Access High expression of metabolic enzyme PFKFB4 is associated with poor prognosis of operable breast cancer Ling Yao1,2,3†, Lei Wang1,2,3†, Zhi‑Gang Cao1,2,3, Xin Hu1,2,3* and Zhi‑Ming Shao1,2,3,4* Abstract Background: Enhanced glycolysis in tumors, known as the Warburg efect, provides the metabolic basis of enhanced cancer cell proliferation and metastasis. The Warburg pathway enzyme 6‑phosphofructo‑2‑kinase/fructose‑ 2,6‑bisphosphatase 4 (PFKFB4) is a newly identifed key kinase that regulates transcriptional reprogramming and cell proliferation. Here we show the prognostic value of PFKFB4 expression in patients with operable breast cancer. Methods: PFKFB4 expression was evaluated by immunohistochemistry in surgical specimens retrospectively col‑ lected from 200 patients with histologically proven invasive ductal breast cancer. Kaplan–Meier survival analysis and Cox regression analysis were performed to assess the prognostic signifcance of PFKFB4 expression. Results: Kaplan–Meier survival analysis revealed that breast cancer patients with high PFKFB4 expression demon‑ strated unfavorable disease‑free survival (p 0.008) and overall survival (p 0.002). PFKFB4 had an hazard ratio (HR) of 7.38 (95% CI 1.69–32.3; p 0.008) in univariate= Cox analysis and retained prognostic= power (HR 7.44, 95% CI 1.67–33.2; p 0.009) when adjusted= by tumor size, lymph node status, grade, estrogen receptor status, human epidermal growth= factor receptor 2 status and subtype, which indicated PFKFB4 was an independent prognostic factor in breast cancer. -
Altered Gene Expression Along the Glycolysis– Cholesterol Synthesis Axis Is Associated with Outcome in Pancreatic Cancer Joanna M
Published OnlineFirst September 3, 2019; DOI: 10.1158/1078-0432.CCR-19-1543 Precision Medicine and Imaging Clinical Cancer Research Altered Gene Expression along the Glycolysis– Cholesterol Synthesis Axis Is Associated with Outcome in Pancreatic Cancer Joanna M. Karasinska1, James T. Topham1, Steve E. Kalloger1,2, Gun Ho Jang3, Robert E. Denroche3, Luka Culibrk4, Laura M.Williamson4, Hui-Li Wong5, Michael K.C. Lee5, Grainne M. O'Kane6, Richard A. Moore4, Andrew J. Mungall4, Malcolm J. Moore5, Cassia Warren1, Andrew Metcalfe1, Faiyaz Notta3, Jennifer J. Knox6, Steven Gallinger3,6, Janessa Laskin4,5, Marco A. Marra4,7, Steven J.M. Jones4,7, Daniel J. Renouf1,5,8, and David F. Schaeffer1,2,9 Abstract Purpose: Identification of clinically actionable molecular groups were identified: quiescent, glycolytic, cholestero- subtypes of pancreatic ductal adenocarcinoma (PDAC) is key genic, and mixed. Glycolytic tumors were associated with to improving patient outcome. Intertumoral metabolic hetero- the shortest median survival in resectable (log-rank test geneity contributes to cancer survival and the balance between P ¼ 0.018) and metastatic settings (log-rank test P ¼ distinct metabolic pathways may influence PDAC outcome. We 0.027). Patients with cholesterogenic tumors had the lon- hypothesized that PDAC can be stratified into prognostic gest median survival. KRAS and MYC-amplified tumors metabolic subgroups based on alterations in the expression of had higher expression of glycolytic genes than tumors with genes involved in glycolysis and cholesterol synthesis. normal or lost copies of the oncogenes (Wilcoxon rank Experimental Design: We performed bioinformatics analy- sum test P ¼ 0.015). Glycolytic tumors had the lowest sis of genomic, transcriptomic, and clinical data in an integrated expression of mitochondrial pyruvate carriers MPC1 and cohort of 325 resectable and nonresectable PDAC. -
Caffeic Acid Targets AMPK Signaling and Regulates Tricarboxylic
nutrients Article Caffeic Acid Targets AMPK Signaling and Regulates Tricarboxylic Acid Cycle Anaplerosis while Metformin Downregulates HIF-1α-Induced Glycolytic Enzymes in Human Cervical Squamous Cell Carcinoma Lines Malgorzata Tyszka-Czochara 1,* ID , Karolina Bukowska-Strakova 2, Kinga A. Kocemba-Pilarczyk 3 and Marcin Majka 4,* ID 1 Department of Food Chemistry and Nutrition, Faculty of Pharmacy, Jagiellonian University Medical College, Medyczna 9, 30-688 Krakow, Poland 2 Department of Clinical Immunology, Institute of Pediatrics, Jagiellonian University Medical College, Wielicka 265, 30-663 Krakow, Poland; [email protected] 3 Faculty of Medicine, Jagiellonian University-Medical College, Kopernika 7, 31-034 Krakow, Poland; [email protected] 4 Department of Department of Transplantation, Faculty of Medicine, Jagiellonian University Medical College, Wielicka 258, 30-688 Krakow, Poland * Correspondence: [email protected] (M.T.-C.); [email protected] (M.M.); Tel.: +48-(12)6205670 (M.T.-C.); +48-(12)6591593 (M.M.) Received: 22 May 2018; Accepted: 25 June 2018; Published: 28 June 2018 Abstract: The small molecules, natural antioxidant Caffeic Acid (trans-3,4-Dihydroxycinnamic acid CA) and anti-diabetic drug Metformin (Met), activate 50-adenosine monophosphate-activated protein kinase (AMPK) and interfere with metabolic reprogramming in human cervical squamous carcinoma cells. Here, to gain more insight into the ability of CA, Met and the combination of both compounds to impair aerobic glycolysis (the “Warburg effect”) and disrupt bioenergetics of cancer cells, we employed the cervical tumor cell lines C-4I and HTB-35/SiHa. In epithelial C-4I cells derived from solid tumors, CA alleviated glutamine anaplerosis by downregulation of Glutaminase (GLS) and Malic Enzyme 1 (ME1), which resulted in the reduction of NADPH levels. -
The Metabolic Role of PFKFB4 in Androgen-Independent Growth In
Li et al. BMC Urology (2020) 20:61 https://doi.org/10.1186/s12894-020-00635-0 RESEARCH ARTICLE Open Access The metabolic role of PFKFB4 in androgen- independent growth in vitro and PFKFB4 expression in human prostate cancer tissue Ximing Li1,2, Zhi Chen1, Zuan Li1, Guihai Huang1, Junhao Lin1, Qiang Wei3, Jianbo Liang1 and Wei Li1* Abstract Background: It is well known that androgen-deprivation therapy (ADT) can inevitably drive prostate cancer (PCa) cells into a castration-resistant state. According to the “Warburg effect”, the metabolism of aggressive tumor cells increases significantly. The growth of cancer cells depends on glycolysis, which may be a potential target for cancer control. 6-Phosphofructo-2-kinase/fructose-2,6-biphosphatase 4 (PFKFB4) plays key roles in the proliferation and metastasis of PCa cells. However, there is very limited knowledge on the role of PFKFB4 in the conversion to castration resistance. The present study aimed to determine the changes in glucose consumption and PFKFB4 expression in LNCaP cells and androgen-independent LNCaP (LNCaP-AI) cells during the whole process of androgen-independent growth. Additionally, PFKFB4 expression in human PCa tissues was evaluated. Methods: We established an androgen-independent LNCaP-AI cell line derived from LNCaP cells to mimic the traits of castration resistance in vitro. LNCaP-AI and LNCaP cells were cultured in the corresponding medium containing the same amount of glucose. At the end of experiments, the medium supernatant and blank medium were collected, and absorbance was measured. LNCaP-AI and LNCaP cells were harvested to detect PFKFB4 expression by Western blotting. -
Analysis of Malignant Melanoma Cell Lines Exposed to Hypoxia Reveals the Importance of PFKFB4 Overexpression for Disease Progression SONIA E
ANTICANCER RESEARCH 38 : 6745-6752 (2018) doi:10.21873/anticanres.13044 Analysis of Malignant Melanoma Cell Lines Exposed to Hypoxia Reveals the Importance of PFKFB4 Overexpression for Disease Progression SONIA E. TROJAN 1, MONIKA PIWOWAR 2, BARBARA OSTROWSKA 1, PIOTR LAIDLER 1* and KINGA A. KOCEMBA-PILARCZYK 1* 1Chair of Medical Biochemistry, 2Department of Bioinformatics and Telemedicine, Faculty of Medicine, Jagiellonian University – Medical College, Cracow, Poland Abstract. Background/Aim: Most melanomas develop in for melanin production. One of the major risk factors for hypoxic conditions. Since hypoxia via HIF-1 induces glycolysis, melanoma is chronic sun exposure of the skin, leading to a process essential for malignant melanoma growth/survival, UV- induced melanocyte mutations, especially within NRAS, the goal of this study was to analyze the influence of hypoxia BRAF and cKIT protooncogenes (5). On the other hand, a on the expression of HIF-1 target genes involved in glucose considerable group of melanoma patients reports a family metabolism. Materials and Methods: The response of melanoma history of disease, pointing out the hereditary background of cell lines to hypoxic conditions was analyzed by RT-PCR and this highly lethal cancer, characterized predominantly by western blotting. A Kaplan–Meier survival analysis for patients BRAF mutations (5, 6). In general, mutations in the genes with high and low expression level of PFKFB4 was performed. involved in proliferation, apoptosis, metabolism and cell Further analysis of patients’ data was performed using the cycle constitute the main cause of malignant melanoma R/Bioconductor environment. Results: Induction of PFKFB4 transformations (5). gene expression can be considered a crucial mechanism behind Although the genetic alterations in melanocytic DNA are glycolysis enhancement in hypoxic melanoma cells. -
Cyclin and Growth Arrest-Specific Genes
ISSN: 0975-8585 Research Journal of Pharmaceutical, Biological and Chemical Sciences Expression of Genes Encoded 6-phosphofructo-2-kinase/fructose-2, 6- bisphosphatase and 6-phosphofructo-1-kinase in U87 Glioma Cells with ERN1 Loss of Function: Hypoxic Regulation 1,2Minchenko DM, 1Lypova NM, 1Harmash YA, 3Kulinich AO, 1Marunych RY, 1Karbovskyi LL, 1*Minchenko ОH 1Palladin Institute of Biochemistry National Academy of Science of Ukraine, Kyiv, Ukraine. 2National O.O. Bohomolets Medical University, Kyiv 01601, Ukraine. 3Dnipropetrovs’k State Medical Academy, Dnipropetrovs’k 49600, Ukraine. ABSTRACT The endoplasmic reticulum–nuclei-1 (ERN1) sensing and signaling enzyme mediates a set of complex intracellular signaling events known as the unfolded protein response. We have studied the effect of hypoxia on the expression of genes encoded different 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase (PFKFB1, PFKFB2, PFKFB3 and PFKFB4) and 6-phosphofructo-1-kinase (PFKL, PFKM and PFKP) as well as lactate dehydrogenase (LDHA) in glioma U87 cells and its subline with suppressed function of ERN1 signaling enzyme. It was shown that blockade a function of ERN1 enzyme, the key endoplasmic reticulum stress sensor, leads to an increase in the expression levels of PFKFB1, PFKFB2, PFKFB3 and PFKFB4 mRNA, being more significant for PFKFB4 and PFKFB2. Moreover, the expression level of PFKL and PFKP as well as LDHA mRNA also increases in cells with ERN1 loss of function, being more significant for PFKL. At the same time, the expression level of PFKM mRNA significantly decreases at this experimental condition. Exposure cells under hypoxic conditions leads to an increase of the expression level of PFKFB3 and PFKFB4 mRNA both in control glioma cells and cells with ERN1 loss of function, being more significant for PFKFB4. -
Genome-Wide CRISPR-Cas9 Screens Reveal Loss of Redundancy Between PKMYT1 and WEE1 in Glioblastoma Stem-Like Cells
Article Genome-wide CRISPR-Cas9 Screens Reveal Loss of Redundancy between PKMYT1 and WEE1 in Glioblastoma Stem-like Cells Graphical Abstract Authors Chad M. Toledo, Yu Ding, Pia Hoellerbauer, ..., Bruce E. Clurman, James M. Olson, Patrick J. Paddison Correspondence [email protected] (J.M.O.), [email protected] (P.J.P.) In Brief Patient-derived glioblastoma stem-like cells (GSCs) can be grown in conditions that preserve patient tumor signatures and their tumor initiating capacity. Toledo et al. use these conditions to perform genome-wide CRISPR-Cas9 lethality screens in both GSCs and non- transformed NSCs, revealing PKMYT1 as a candidate GSC-lethal gene. Highlights d CRISPR-Cas9 lethality screens performed in patient brain- tumor stem-like cells d PKMYT1 is identified in GSCs, but not NSCs, as essential for facilitating mitosis d PKMYT1 and WEE1 act redundantly in NSCs, where their inhibition is synthetic lethal d PKMYT1 and WEE1 redundancy can be broken by over- activation of EGFR and AKT Toledo et al., 2015, Cell Reports 13, 2425–2439 December 22, 2015 ª2015 The Authors http://dx.doi.org/10.1016/j.celrep.2015.11.021 Cell Reports Article Genome-wide CRISPR-Cas9 Screens Reveal Loss of Redundancy between PKMYT1 and WEE1 in Glioblastoma Stem-like Cells Chad M. Toledo,1,2,14 Yu Ding,1,14 Pia Hoellerbauer,1,2 Ryan J. Davis,1,2,3 Ryan Basom,4 Emily J. Girard,3 Eunjee Lee,5 Philip Corrin,1 Traver Hart,6,7 Hamid Bolouri,1 Jerry Davison,4 Qing Zhang,4 Justin Hardcastle,1 Bruce J. Aronow,8 Christopher L.