Test Chemical Solubility Protocol
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Solubility and Aggregation of Selected Proteins Interpreted on the Basis of Hydrophobicity Distribution
International Journal of Molecular Sciences Article Solubility and Aggregation of Selected Proteins Interpreted on the Basis of Hydrophobicity Distribution Magdalena Ptak-Kaczor 1,2, Mateusz Banach 1 , Katarzyna Stapor 3 , Piotr Fabian 3 , Leszek Konieczny 4 and Irena Roterman 1,2,* 1 Department of Bioinformatics and Telemedicine, Jagiellonian University—Medical College, Medyczna 7, 30-688 Kraków, Poland; [email protected] (M.P.-K.); [email protected] (M.B.) 2 Faculty of Physics, Astronomy and Applied Computer Science, Jagiellonian University, Łojasiewicza 11, 30-348 Kraków, Poland 3 Institute of Computer Science, Silesian University of Technology, Akademicka 16, 44-100 Gliwice, Poland; [email protected] (K.S.); [email protected] (P.F.) 4 Chair of Medical Biochemistry—Jagiellonian University—Medical College, Kopernika 7, 31-034 Kraków, Poland; [email protected] * Correspondence: [email protected] Abstract: Protein solubility is based on the compatibility of the specific protein surface with the polar aquatic environment. The exposure of polar residues to the protein surface promotes the protein’s solubility in the polar environment. The aquatic environment also influences the folding process by favoring the centralization of hydrophobic residues with the simultaneous exposure to polar residues. The degree of compatibility of the residue distribution, with the model of the concentration of hydrophobic residues in the center of the molecule, with the simultaneous exposure of polar residues is determined by the sequence of amino acids in the chain. The fuzzy oil drop model enables the quantification of the degree of compatibility of the hydrophobicity distribution Citation: Ptak-Kaczor, M.; Banach, M.; Stapor, K.; Fabian, P.; Konieczny, observed in the protein to a form fully consistent with the Gaussian 3D function, which expresses L.; Roterman, I. -
Solubility & Density
Natural Resources - Water WHAT’S SO SPECIAL ABOUT WATER: SOLUBILITY & DENSITY Activity Plan – Science Series ACTpa025 BACKGROUND Project Skills: Water is able to “dissolve” other substances. The molecules of water attract and • Discovery of chemical associate with the molecules of the substance that dissolves in it. Youth will have fun and physical properties discovering and using their critical thinking to determine why water can dissolve some of water. things and not others. Life Skills: • Critical thinking – Key vocabulary words: develops wider • Solvent is a substance that dissolves other substances, thus forming a solution. comprehension, has Water dissolves more substances than any other and is known as the “universal capacity to consider solvent.” more information • Density is a term to describe thickness of consistency or impenetrability. The scientific formula to determine density is mass divided by volume. Science Skills: • Hypothesis is an explanation for a set of facts that can be tested. (American • Making hypotheses Heritage Dictionary) • The atom is the smallest unit of matter that can take part in a chemical reaction. Academic Standards: It is the building block of matter. The activity complements • A molecule consists of two or more atoms chemically bonded together. this academic standard: • Science C.4.2. Use the WHAT TO DO science content being Activity: Density learned to ask questions, 1. Take a clear jar, add ¼ cup colored water, ¼ cup vegetable oil, and ¼ cup dark plan investigations, corn syrup slowly. Dark corn syrup is preferable to light so that it can easily be make observations, make distinguished from the oil. predictions and offer 2. -
THE SOLUBILITY of GASES in LIQUIDS Introductory Information C
THE SOLUBILITY OF GASES IN LIQUIDS Introductory Information C. L. Young, R. Battino, and H. L. Clever INTRODUCTION The Solubility Data Project aims to make a comprehensive search of the literature for data on the solubility of gases, liquids and solids in liquids. Data of suitable accuracy are compiled into data sheets set out in a uniform format. The data for each system are evaluated and where data of sufficient accuracy are available values are recommended and in some cases a smoothing equation is given to represent the variation of solubility with pressure and/or temperature. A text giving an evaluation and recommended values and the compiled data sheets are published on consecutive pages. The following paper by E. Wilhelm gives a rigorous thermodynamic treatment on the solubility of gases in liquids. DEFINITION OF GAS SOLUBILITY The distinction between vapor-liquid equilibria and the solubility of gases in liquids is arbitrary. It is generally accepted that the equilibrium set up at 300K between a typical gas such as argon and a liquid such as water is gas-liquid solubility whereas the equilibrium set up between hexane and cyclohexane at 350K is an example of vapor-liquid equilibrium. However, the distinction between gas-liquid solubility and vapor-liquid equilibrium is often not so clear. The equilibria set up between methane and propane above the critical temperature of methane and below the criti cal temperature of propane may be classed as vapor-liquid equilibrium or as gas-liquid solubility depending on the particular range of pressure considered and the particular worker concerned. -
Absolute Measurement of the Abundance of Atmospheric Carbon Monoxide C
Absolute measurement of the abundance of atmospheric carbon monoxide C. Brenninkmeijer, C. Koeppel, T. Röckmann, D. Scharffe, Maya Bräunlich, Valerie Gros To cite this version: C. Brenninkmeijer, C. Koeppel, T. Röckmann, D. Scharffe, Maya Bräunlich, et al.. Absolute mea- surement of the abundance of atmospheric carbon monoxide. Journal of Geophysical Research: At- mospheres, American Geophysical Union, 2001, 106 (D9), pp.10003-10010. 10.1029/2000JD900342. hal-03117189 HAL Id: hal-03117189 https://hal.archives-ouvertes.fr/hal-03117189 Submitted on 8 Feb 2021 HAL is a multi-disciplinary open access L’archive ouverte pluridisciplinaire HAL, est archive for the deposit and dissemination of sci- destinée au dépôt et à la diffusion de documents entific research documents, whether they are pub- scientifiques de niveau recherche, publiés ou non, lished or not. The documents may come from émanant des établissements d’enseignement et de teaching and research institutions in France or recherche français ou étrangers, des laboratoires abroad, or from public or private research centers. publics ou privés. JOURNAL OF GEOPHYSICAL RESEARCH, VOL. 106, NO. D9, PAGES 10,003-10,010, MAY 16, 2001 Absolute measurement of the abundance of atmospheric carbon monoxide C. A.M. Brenninkmeijer,C. Koeppel,T. R6ckmann,D. S. Scharffe, Maya Br•iunlich,and Valerie Gros AtmosphericChemistry Division, Max PlanckInstitute for Chemistry,Mainz, Germany Abstract.The main aspects of anabsolute method for measurementof the mixing ratio of atmos- phericcarbon monoxide (CO) are presented. The method is based on cryogenic extraction of CO fromair afteroxidation to CO2followed by accuratevolumetric determination. Gravimetric meas- urementis usedto determinethe quantity of sampleair processed.In routineoperation the overall errorcan be kept below 1%. -
Carbon Dioxide Capture by Chemical Absorption: a Solvent Comparison Study
Carbon Dioxide Capture by Chemical Absorption: A Solvent Comparison Study by Anusha Kothandaraman B. Chem. Eng. Institute of Chemical Technology, University of Mumbai, 2005 M.S. Chemical Engineering Practice Massachusetts Institute of Technology, 2006 SUBMITTED TO THE DEPARTMENT OF CHEMICAL ENGINEERING IN PARTIAL FULFILLMENT OF THE REQUIREMENTS FOR THE DEGREE OF DOCTOR OF PHILOSOPHY IN CHEMICAL ENGINEERING PRACTICE AT THE MASSACHUSETTS INSTITUTE OF TECHNOLOGY JUNE 2010 © 2010 Massachusetts Institute of Technology All rights reserved. Signature of Author……………………………………………………………………………………… Department of Chemical Engineering May 20, 2010 Certified by……………………………………………………….………………………………… Gregory J. McRae Hoyt C. Hottel Professor of Chemical Engineering Thesis Supervisor Accepted by……………………………………………………………………………….................... William M. Deen Carbon P. Dubbs Professor of Chemical Engineering Chairman, Committee for Graduate Students 1 2 Carbon Dioxide Capture by Chemical Absorption: A Solvent Comparison Study by Anusha Kothandaraman Submitted to the Department of Chemical Engineering on May 20, 2010 in partial fulfillment of the requirements of the Degree of Doctor of Philosophy in Chemical Engineering Practice Abstract In the light of increasing fears about climate change, greenhouse gas mitigation technologies have assumed growing importance. In the United States, energy related CO2 emissions accounted for 98% of the total emissions in 2007 with electricity generation accounting for 40% of the total1. Carbon capture and sequestration (CCS) is one of the options that can enable the utilization of fossil fuels with lower CO2 emissions. Of the different technologies for CO2 capture, capture of CO2 by chemical absorption is the technology that is closest to commercialization. While a number of different solvents for use in chemical absorption of CO2 have been proposed, a systematic comparison of performance of different solvents has not been performed and claims on the performance of different solvents vary widely. -
THE SOLUBILITY of GASES in LIQUIDS INTRODUCTION the Solubility Data Project Aims to Make a Comprehensive Search of the Lit- Erat
THE SOLUBILITY OF GASES IN LIQUIDS R. Battino, H. L. Clever and C. L. Young INTRODUCTION The Solubility Data Project aims to make a comprehensive search of the lit erature for data on the solubility of gases, liquids and solids in liquids. Data of suitable accuracy are compiled into data sheets set out in a uni form format. The data for each system are evaluated and where data of suf ficient accuracy are available values recommended and in some cases a smoothing equation suggested to represent the variation of solubility with pressure and/or temperature. A text giving an evaluation and recommended values and the compiled data sheets are pUblished on consecutive pages. DEFINITION OF GAS SOLUBILITY The distinction between vapor-liquid equilibria and the solUbility of gases in liquids is arbitrary. It is generally accepted that the equilibrium set up at 300K between a typical gas such as argon and a liquid such as water is gas liquid solubility whereas the equilibrium set up between hexane and cyclohexane at 350K is an example of vapor-liquid equilibrium. However, the distinction between gas-liquid solUbility and vapor-liquid equilibrium is often not so clear. The equilibria set up between methane and propane above the critical temperature of methane and below the critical temperature of propane may be classed as vapor-liquid equilibrium or as gas-liquid solu bility depending on the particular range of pressure considered and the par ticular worker concerned. The difficulty partly stems from our inability to rigorously distinguish between a gas, a vapor, and a liquid, which has been discussed in numerous textbooks. -
Effects on Accuracy and Detection Limits
WHITE Sensitivity, Background, Noise, and Calibration in Atomic PAPER Spectroscopy: Effects on Accuracy and Detection Limits Introduction Proper calibration in atomic spectroscopy and an understanding The three most common atomic spectroscopy techniques of uncertainty is fundamental to achieving accurate results. This are atomic absorption (AA) spectroscopy, ICP optical emission paper provides a practical discussion of the effects of noise, error spectroscopy (ICP-OES) and ICP mass spectrometry (ICP-MS). and concentration range of calibration curves on the ability to Of these, ICP-OES and ICP-MS are very linear; that is, a plot determine the concentration of a given element with reasonable of concentration vs. intensity forms a straight line over a accuracy. The determination of lower limits of quantitation and wide range of concentrations (Figure 1). AA is linear over a lower limits of detection will also be discussed. much smaller range and begins to curve downward at higher Results accuracy is highly dependent on blank contamination, concentrations (Figure 2). Linear ranges are well understood, linearity of calibration standards, curve-fitting choices and the and, for AA, a rule of thumb can be applied to estimate the range of concentrations chosen for calibration. Additional factors maximum working range using a non-linear algorithm. include the use of internal standards (and proper selection of This paper will discuss the contributions of sensitivity, internal standards) and instrumental settings. background, noise, calibration range, calibration mathematics This paper is not intended to be a rigorous treatment of statistics and contamination on the ability to achieve best accuracy and in calibration; many references are available for this, such as lowest detection limits. -
Combined Wastestream Formula (CWF)
UnitedStates PermitsDivision and September1985 EnvironmentalProtection IndustrialTechnology Division Agency Washington,DC 20460 Water EPA Guidance Manual Pretreatment for the Use of Production-Based Pretreatment Standards and the Combined Wastestream Formula UNITED STATES ENVIRONMENTAL PROTECTION AGENCY WASHINGTON, D.C. 20460 SEP 19 1985 OFFICEOF WATER MEMORANDUM SUBJECT: Pretreatment Program Guidance FROM: Rebecca W. Hanmer, Director Office of Water Enforcement and Permits (EN-335) James M. Conlon, Acting Director Office of Water Regulations and Standards (WH-551) TO: Users of the Guidance Manual for the Use of Production- Based Categorical Pretreatment Standards and the Combined Wastestream Formula This guidance manual has been developed by EPA to explain how to implement two important elements of the national pretreatment program: categorical standards and the combined wastestream formula. The manual is divided into two sections. The first section explains how to apply production-based categorical standards in a permit, contract, or similar mechanism. The second part explains how to use the combined wastestream formula, providing definitions and examples. The manual is one of a series of guidance documents intended to simplify and improve understanding of various aspects of the pretreatment program. Other documents in this series which have either been recently issued or will be issued in the near future will provide guidance on: 1) Removal Credits 2) Total Toxic Organics (TTO) Monitoring 3) RCRA Notification Requirements 4) Local Limits 5) POTW Interference The need for guidance on the use of categorical standards and the combined wastestream formula was recognized by the Pretreatment Implementation Review Task Force (PIRT). PIRT was set up by the EPA Administrator to make recommendations concerning the problems faced by POTWs, states, and industry in implementing the national pretreatment program. -
Biotransformation: Basic Concepts (1)
Chapter 5 Absorption, Distribution, Metabolism, and Elimination of Toxics Biotransformation: Basic Concepts (1) • Renal excretion of chemicals Biotransformation: Basic Concepts (2) • Biological basis for xenobiotic metabolism: – To convert lipid-soluble, non-polar, non-excretable forms of chemicals to water-soluble, polar forms that are excretable in bile and urine. – The transformation process may take place as a result of the interaction of the toxic substance with enzymes found primarily in the cell endoplasmic reticulum, cytoplasm, and mitochondria. – The liver is the primary organ where biotransformation occurs. Biotransformation: Basic Concepts (3) Biotransformation: Basic Concepts (4) • Interaction with these enzymes may change the toxicant to either a less or a more toxic form. • Generally, biotransformation occurs in two phases. – Phase I involves catabolic reactions that break down the toxicant into various components. • Catabolic reactions include oxidation, reduction, and hydrolysis. – Oxidation occurs when a molecule combines with oxygen, loses hydrogen, or loses one or more electrons. – Reduction occurs when a molecule combines with hydrogen, loses oxygen, or gains one or more electrons. – Hydrolysis is the process in which a chemical compound is split into smaller molecules by reacting with water. • In most cases these reactions make the chemical less toxic, more water soluble, and easier to excrete. Biotransformation: Basic Concepts (5) – Phase II reactions involves the binding of molecules to either the original toxic molecule or the toxic molecule metabolite derived from the Phase I reactions. The final product is usually water soluble and, therefore, easier to excrete from the body. • Phase II reactions include glucuronidation, sulfation, acetylation, methylation, conjugation with glutathione, and conjugation with amino acids (such as glycine, taurine, and glutamic acid). -
Design Guidelines for Carbon Dioxide Scrubbers I
"NCSCTECH MAN 4110-1-83 I (REVISION A) S00 TECHNICAL MANUAL tow DESIGN GUIDELINES FOR CARBON DIOXIDE SCRUBBERS I MAY 1983 REVISED JULY 1985 Prepared by M. L. NUCKOLS, A. PURER, G. A. DEASON I OF * Approved for public release; , J 1"73 distribution unlimited NAVAL COASTAL SYSTEMS CENTER PANAMA CITY, FLORIDA 32407 85. .U 15 (O SECURITY CLASSIFICATION OF TNIS PAGE (When Data Entered) R O DOCULMENTATIONkB PAGE READ INSTRUCTIONS REPORT DOCUMENTATION~ PAGE BEFORE COMPLETING FORM 1. REPORT NUMBER 2a. GOVT AQCMCSION N (.SAECIP F.NTTSChALOG NUMBER "NCSC TECHMAN 4110-1-83 (Rev A) A, -NI ' 4. TITLE (and Subtitle) S. TYPE OF REPORT & PERIOD COVERED "Design Guidelines for Carbon Dioxide Scrubbers '" 6. PERFORMING ORG. REPORT N UMBER A' 7. AUTHOR(&) 8. CONTRACT OR GRANT NUMBER(S) M. L. Nuckols, A. Purer, and G. A. Deason 9. PERFORMING ORGANIZATION NAME AND ADDRESS 10. PROGRAM ELEMENT, PROJECT. TASK AREA 6t WORK UNIT NUMBERS Naval Coastal PanaaLSystems 3407Project CenterCty, S0394, Task Area Panama City, FL 32407210,WrUnt2 22102, Work Unit 02 II. CONTROLLING OFFICE NAME AND ADDRE1S t2. REPORT 3ATE May 1983 Rev. July 1985 13, NUMBER OF PAGES 69 14- MONI TORING AGENCY NAME & ADDRESS(if different from Controtling Office) 15. SECURITY CLASS. (of this report) UNCLASSIFIED ISa. OECL ASSI FICATION/DOWNGRADING _ __N•AEOULE 16. DISTRIBUTION STATEMENT (of thia Repott) Approved for public release; distribution unlimited. 17. DISTRIBUTION STATEMENT (of the abstract entered In Block 20, If different from Report) IS. SUPPLEMENTARY NOTES II. KEY WORDS (Continue on reverse side If noceassry and Identify by block number) Carbon Dioxide; Scrubbers; Absorption; Design; Life Support; Pressure; "Swimmer Diver; Environmental Effects; Diving., 20. -
3.1 Polarization Behavior of Active Passive Metals and Alloys Glossary
3.1 Polarization Behavior of Active Passive Metals and Alloys John R. Scully, Katie Lutton Center for Electrochemical Science and Engineering Department of Materials Science and Engineering University of Virginia, Charlottesville, VA, United States Glossary Symbol Explanation 퐸푃 Primary passivation potential 퐸푃2 Primary activation potential 푖푐푟푖푡 Critical current density 퐸푡푟푎푛푠 Transpassive potential 퐸푃1 First primary passivation potential 표 퐸푃 Hypothetical standard primary passivation potential based on a half-cell reaction 휏푃 Critical time for passivation 푆퐻퐸 Standard hydrogen electrode 푖푝푎푠푠 Passive current density 푖lim Limiting current density for a mass transport limited cathodic reaction Abstract The objective of this chapter is to summarize the relationships between electrochemical potential and current density for typical transition metals such as Fe, Cr, and Ni. Key parameters such as the active passive transition, primary and secondary passivation potentials, critical anodic current density, passive current density, and transpassive region are presented, defined, and interpreted to explain typical E-log(i) diagrams and polarization curves. Consideration is given to the polarization behavior of a passivating electrode resulting from both the anodic and cathodic partial currents using mixed potential theory. The impact of the reversible electrode potential and polarizability of an oxidizing reducible species on the observed E-log(i) polarization behavior of such passivated materials is discussed. The kinetics of the passive film -
Florpyrauxifen-Benzyl & Degradates in Compost
Page 16 INTRODUCTION Scope The objective of the study was to independently validate analytical method as given in the DAS study 171407 [1] for the determination of Florpyrauxifen benzyl (XDE-848 BE), X11438848 and X11966341 in compost in accordance to the guidance documents SANCO/825/00, rev. 8.1 [2] and SANCO/3029/99 rev. 4 of the European Commission [3], and OCSPP 850.6100 of the United States Environmental Protection Agency [4]. The limit of quantification was 0.00015 mg/kg for Florpyrauxifen benzyl (XDE-848 BE), 0.00045 mg/kg for X11438848 and 0.009 mg/kg for X11966341 Analytical Procedure Compost samples were extracted by shaking with acetonitrile/0.1N hydrochloric acid (90:10, v/v), centrifuging, and decanting into a separate tube containing QuEChERS Citrat kit. An aliquot of 1N HCl was added to the extract followed by centrifugation. After a portion of the organic layer was aliquoted, internal standard was added and the sample was evaporated to near dryness under a stream of nitrogen. 1N HCl was added and the samples were incubated for one hour at 80 °C. Ethyl acetate was added and the samples were transferred to a Supel QuE Z-Sep tube and centrifuged. After centrifuging, the samples were placed in a dry ice bath to flash freeze the aqueous layer and the organic layer was poured off into a glass tube. The samples were evaporated under a stream of nitrogen, reconstituted in methanol and 0.1% formic acid in water, and transferred into an autosampler vial for analysis. The samples were analyzed for XDE-848 BE and its metabolites by liquid chromatography with positive ion electrospray ionization tandem mass spectrometry Selectivity Quantification was performed by use of LC-MS/MS detection.