Survival Rates of Homozygotic Tp53 Knockout Rats As a Tool For
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CRISPR/Cas9-Mediated Trp53 and Brca2 Knockout
Published OnlineFirst August 16, 2016; DOI: 10.1158/0008-5472.CAN-16-1272 Cancer Tumor and Stem Cell Biology Research CRISPR/Cas9-Mediated Trp53 and Brca2 Knockout to Generate Improved Murine Models of Ovarian High-Grade Serous Carcinoma Josephine Walton1,2, Julianna Blagih3, Darren Ennis1, Elaine Leung1, Suzanne Dowson1, Malcolm Farquharson1, Laura A. Tookman4, Clare Orange5, Dimitris Athineos3, Susan Mason3, David Stevenson3, Karen Blyth3, Douglas Strathdee3, Frances R. Balkwill2, Karen Vousden3, Michelle Lockley4, and Iain A. McNeish1,4 Abstract – – There is a need for transplantable murine models of ovarian ating novel ID8 derivatives that harbored single (Trp53 / )or – – – – high-grade serous carcinoma (HGSC) with regard to mutations in double (Trp53 / ;Brca2 / ) suppressor gene deletions. In these the human disease to assist investigations of the relationships mutants, loss of p53 alone was sufficient to increase the growth between tumor genotype, chemotherapy response, and immune rate of orthotopic tumors with significant effects observed on the microenvironment. In addressing this need, we performed whole- immune microenvironment. Specifically, p53 loss increased exome sequencing of ID8, the most widely used transplantable expression of the myeloid attractant CCL2 and promoted the model of ovarian cancer, covering 194,000 exomes at a mean infiltration of immunosuppressive myeloid cell populations into – – – – depth of 400Â with 90% exons sequenced >50Â. We found no primary tumors and their ascites. In Trp53 / ;Brca2 / mutant functional mutations in genes characteristic of HGSC (Trp53, cells, we documented a relative increase in sensitivity to the PARP Brca1, Brca2, Nf1, and Rb1), and p53 remained transcriptionally inhibitor rucaparib and slower orthotopic tumor growth – – active. Homologous recombination in ID8 remained intact in compared with Trp53 / cells, with an appearance of intratumoral þ functional assays. -
THE FUTURE of SCREENS from James Stanton a Little Bit About Me
THE FUTURE OF SCREENS From james stanton A little bit about me. Hi I am James (Mckenzie) Stanton Thinker / Designer / Engineer / Director / Executive / Artist / Human / Practitioner / Gardner / Builder / and much more... Born in Essex, United Kingdom and survived a few hair raising moments and learnt digital from the ground up. Ok enough of the pleasantries I have been working in the design field since 1999 from the Falmouth School of Art and onwards to the RCA, and many companies. Ok. less about me and more about what I have seen… Today we are going to cover - SCREENS CONCEPTS - DIGITAL TRANSFORMATION - WHY ASSETS LIBRARIES - CODE LIBRARIES - COST EFFECTIVE SOLUTION FOR IMPLEMENTATION I know, I know, I know. That's all good and well, but what does this all mean to a company like mine? We are about to see a massive change in consumer behavior so let's get ready. DIGITAL TRANSFORMATION AS A USP Getting this correct will change your company forever. DIGITAL TRANSFORMATION USP-01 Digital transformation (DT) – the use of technology to radically improve performance or reach of enterprises – is becoming a hot topic for companies across the globe. VERY DIGITAL CHANGING NOT VERY DIGITAL DIGITAL TRANSFORMATION USP-02 Companies face common pressures from customers, employees and competitors to begin or speed up their digital transformation. However they are transforming at different paces with different results. VERY DIGITAL CHANGING NOT VERY DIGITAL DIGITAL TRANSFORMATION USP-03 Successful digital transformation comes not from implementing new technologies but from transforming your organisation to take advantage of the possibilities that new technologies provide. -
Knockout Rat Models Mimicking Human Atherosclerosis Created By
www.nature.com/scientificreports OPEN Knockout rat models mimicking human atherosclerosis created by Cpf1-mediated gene targeting Received: 23 September 2018 Jong Geol Lee1,2,3, Chang Hoon Ha2,4, Bohyun Yoon2, Seung-A. Cheong1, Globinna Kim1,2,4, Accepted: 8 January 2019 Doo Jae Lee2, Dong-Cheol Woo1,2,4, Young-Hak Kim5, Sang-Yoon Nam3, Sang-wook Lee1,6, Published: xx xx xxxx Young Hoon Sung1,2,4 & In-Jeoung Baek1,2,4 The rat is a time-honored traditional experimental model animal, but its use is limited due to the difculty of genetic modifcation. Although engineered endonucleases enable us to manipulate the rat genome, it is not known whether the newly identifed endonuclease Cpf1 system is applicable to rats. Here we report the frst application of CRISPR-Cpf1 in rats and investigate whether Apoe knockout rat can be used as an atherosclerosis model. We generated Apoe- and/or Ldlr-defcient rats via CRISPR-Cpf1 system, characterized by high efciency, successful germline transmission, multiple gene targeting capacity, and minimal of-target efect. The resulting Apoe knockout rats displayed hyperlipidemia and aortic lesions. In partially ligated carotid arteries of rats and mice fed with high-fat diet, in contrast to Apoe knockout mice showing atherosclerotic lesions, Apoe knockout rats showed only adventitial immune infltrates comprising T lymphocytes and mainly macrophages with no plaque. In addition, adventitial macrophage progenitor cells (AMPCs) were more abundant in Apoe knockout rats than in mice. Our data suggest that the Cpf1 system can target single or multiple genes efciently and specifcally in rats with genetic heritability and that Apoe knockout rats may help understand initial- stage atherosclerosis. -
UW-Madison Undergraduate Symposium || Abstracts 2014
ABSTRACTS 2014 Undergraduate Symposium Celebrating research, creative endeavor and service-learning We would like to thank our major sponsors and partners: Brittingham Trust General Library System Institute for Biology Education McNair Scholars Program Morgridge Center for Public Service Office of the Provost Undergraduate Academic Awards Office Undergraduate Research Scholars Program University Marketing Wisconsin Union The Writing Center 2014 Undergraduate Symposium Organizing Committee: Jane Harris Cramer, Maya Holtzman, Svetlana Karpe, Kelli Hughes, Linda Kietzer, Laurie Mayberry, Aaron Miller, Christopher Olsen, Janice Rice, Amy Sloane, Julie Stubbs, Malika Taalbi, Beth Tryon, and Berit Ness (coordinator). A special thanks is also extended to Stephanie Diaz de Leon of The Wisconsin Union; Rosemary Bodolay, Patricia Iaccarino, Carrie (Carolyn) Kruse, and Pamela O’Donnell at College Library; and Jeff Crucius of the Division of Information Technology. Cover photos courtesy Office of University Communications and the Undergraduate Symposium Committee ii Abstracts and Art Statements University of Wisconsin–Madison April 10, 2014 • Union South THE SHORT AND DIFFICULT LIFE OF WALES’ DEVOLVED GOVERNMENT: WAS IT ALWAYS A LEGITIMATE INSTITUTION? Lucille Abrams, Yoshiko Herrera (Mentor), Political Science The construction of the regional, or devolved, government of Wales, as well as its corresponding governing body, the National Assembly for Wales, was a protracted process. Through library research, I sought to find the reasons for this dif- ficulty and ask if Welsh citizens believed the Assembly to be a valid, or legitimate, political institution. The political history of the United Kingdom, Wales’ individual history, and analysis of voter turnout at the first Assembly election, contribute to answering this question. The Assembly did not suffer from a lack of legitimacy but from an apathetic and alienated constitu- ency. -
Meridium V3.6X Open Source Licenses (PDF Format)
Open Source Components Component Version License License Link Usage Home Page .NET Zip Library Unspecified SharpZipLib GPL License (GPL w/exception) http://www.icsharpcode.net/opensource/sharpziplib/ Dynamic Library http://dotnetziplib.codeplex.com/ 32feet.NET Unspecified Microsoft Public License http://opensource.org/licenses/MS-PL File + Dynamic Library http://32feet.codeplex.com AjaxControlToolkit Unspecified Microsoft Public License http://opensource.org/licenses/MS-PL Dynamic Library http://ajaxcontroltoolkit.codeplex.com/ Android - platform - external - okhttp 4.3_r1 Apache License 2.0 http://www.apache.org/licenses/LICENSE-2.0.html File http://developer.android.com/index.html angleproject Unspecified BSD 3-clause "New" or "Revised" License http://opensource.org/licenses/BSD-3-Clause Dynamic Library http://code.google.com/p/angleproject/ Apache Lucene - Lucene.Net 3.0.3-RC2 Apache License 2.0 http://www.apache.org/licenses/LICENSE-2.0.html Dynamic Library http://lucenenet.apache.org/ AttributeRouting (ASP.NET Web API) 3.5.6 MIT License http://www.opensource.org/licenses/mit-license.php File http://www.nuget.org/packages/AttributeRouting.WebApi AttributeRouting (Self-hosted Web API) 3.5.6 MIT License http://www.opensource.org/licenses/mit-license.php File http://www.nuget.org/packages/AttributeRouting.WebApi.Hosted AttributeRouting.Core 3.5.6 MIT License http://www.opensource.org/licenses/mit-license.php Component http://www.nuget.org/packages/AttributeRouting.Core AttributeRouting.Core.Http 3.5.6 MIT License http://www.opensource.org/licenses/mit-license.php -
Introducing Gene Deletions by Mouse Zygote Electroporation of Cas12a/Cpf1
Zurich Open Repository and Archive University of Zurich Main Library Strickhofstrasse 39 CH-8057 Zurich www.zora.uzh.ch Year: 2019 Introducing gene deletions by mouse zygote electroporation of Cas12a/Cpf1 Dumeau, Charles-Etienne ; Monfort, Asun ; Kissling, Lucas ; Swarts, Daan C ; Jinek, Martin ; Wutz, Anton Abstract: CRISPR-associated (Cas) nucleases are established tools for engineering of animal genomes. These programmable RNA-guided nucleases have been introduced into zygotes using expression vectors, mRNA, or directly as ribonucleoprotein (RNP) complexes by different delivery methods. Whereas mi- croinjection techniques are well established, more recently developed electroporation methods simplify RNP delivery but can provide less consistent efficiency. Previously, we have designed Cas12a-crRNA pairs to introduce large genomic deletions in the Ubn1, Ubn2, and Rbm12 genes in mouse embryonic stem cells (ESC). Here, we have optimized the conditions for electroporation of the same Cas12a RNP pairs into mouse zygotes. Using our protocol, large genomic deletions can be generated efficiently by electroporation of zygotes with or without an intact zona pellucida. Electroporation of as few as ten zygotes is sufficient to obtain a gene deletion in mice suggesting potential applicability of thismethod for species with limited availability of zygotes. DOI: https://doi.org/10.1007/s11248-019-00168-9 Posted at the Zurich Open Repository and Archive, University of Zurich ZORA URL: https://doi.org/10.5167/uzh-181145 Journal Article Published Version The following work is licensed under a Creative Commons: Attribution 4.0 International (CC BY 4.0) License. Originally published at: Dumeau, Charles-Etienne; Monfort, Asun; Kissling, Lucas; Swarts, Daan C; Jinek, Martin; Wutz, Anton (2019). -
Athe Characteristics of Glucose Metabolism in the Sulfonylurea
Zhou et al. Molecular Medicine (2019) 25:2 Molecular Medicine https://doi.org/10.1186/s10020-018-0067-9 RESEARCHARTICLE Open Access aThe characteristics of glucose metabolism in the sulfonylurea receptor 1 knockout rat model Xiaojun Zhou1†, Chunmei Xu1†, Zhiwei Zou2, Xue Shen3, Tianyue Xie3, Rui Zhang1, Lin Liao1* and Jianjun Dong2* Abstract Background: Sulfonylurea receptor 1 (SUR1) is primarily responsible for glucose regulation in normal conditions. Here, we sought to investigate the glucose metabolism characteristics of SUR1−/− rats. Methods: The TALEN technique was used to construct a SUR1 gene deficiency rat model. Rats were grouped by SUR1 gene knockout or not and sex difference. Body weight; glucose metabolism indicators, including IPGTT, IPITT, glycogen contents and so on; and other molecule changes were examined. Results: Insulin secretion was significantly inhibited by knocking out the SUR1 gene. SUR1−/− rats showed lower body weights compared to wild-type rats, and even SUR1−/− males weighed less than wild-type females. Upon SUR1 gene knockout, the rats showed a peculiar plasma glucose profile. During IPGTT, plasma glucose levels were significantly elevated in SUR1−/− rats at 15 min, which could be explained by SUR1 mainly working in the first phase of insulin secretion. Moreover, SUR1−/− male rats showed obviously impaired glucose tolerance than before and a better insulin sensitivity in the 12th week compared with females, which might be related with excess androgen secretion in adulthood. Increased glycogen content and GLUT4 expression and the inactivation of GSK3 were also observed in SUR1−/− rats, which suggested an enhancement of insulin sensitivity. Conclusions: These results reconfirm the role of SUR1 in systemic glucose metabolism. -
Javascript Frameworks for Modern Web Development the Essential Frameworks, Libraries, and Tools to Learn Right Now Second Edition
JavaScript Frameworks for Modern Web Development The Essential Frameworks, Libraries, and Tools to Learn Right Now Second Edition Sufyan bin Uzayr Nicholas Cloud Tim Ambler JavaScript Frameworks for Modern Web Development Sufyan bin Uzayr Nicholas Cloud Al Manama, United Arab Emirates Florissant, MO, USA Tim Ambler Nashville, TN, USA ISBN-13 (pbk): 978-1-4842-4994-9 ISBN-13 (electronic): 978-1-4842-4995-6 https://doi.org/10.1007/978-1-4842-4995-6 Copyright © 2019 by Sufyan bin Uzayr, Nicholas Cloud, Tim Ambler This work is subject to copyright. All rights are reserved by the Publisher, whether the whole or part of the material is concerned, specifically the rights of translation, reprinting, reuse of illustrations, recitation, broadcasting, reproduction on microfilms or in any other physical way, and transmission or information storage and retrieval, electronic adaptation, computer software, or by similar or dissimilar methodology now known or hereafter developed. Trademarked names, logos, and images may appear in this book. Rather than use a trademark symbol with every occurrence of a trademarked name, logo, or image we use the names, logos, and images only in an editorial fashion and to the benefit of the trademark owner, with no intention of infringement of the trademark. The use in this publication of trade names, trademarks, service marks, and similar terms, even if they are not identified as such, is not to be taken as an expression of opinion as to whether or not they are subject to proprietary rights. While the advice and information in this book are believed to be true and accurate at the date of publication, neither the authors nor the editors nor the publisher can accept any legal responsibility for any errors or omissions that may be made. -
Reproductive Technologies for the Generation and Maintenance Of
Journal of Reproduction and Development, Vol. 64, No 3, 2018 —SRD Innovative Technology Award 2017— Reproductive technologies for the generation and maintenance of valuable animal strains Takehito KANEKO1–3) 1)Division of Science and Engineering, Graduate School of Arts and Science, Iwate University, Iwate 020-8551, Japan 2)Department of Chemistry and Biological Sciences, Faculty of Science and Engineering, Iwate University, Iwate 020-8551, Japan 3)Soft-Path Science and Engineering Research Center (SPERC), Iwate University, Iwate 020-8551, Japan Abstract. Many types of mutant and genetically engineered strains have been produced in various animal species. Their numbers have dramatically increased in recent years, with new strains being rapidly produced using genome editing techniques. In the rat, it has been difficult to produce knockout and knock-in strains because the establishment of stem cells has been insufficient. However, a large number of knockout and knock-in strains can currently be produced using genome editing techniques, including zinc-finger nuclease (ZFN), transcription activator-like effector nuclease (TALEN), and the clustered regularly interspaced short palindromic repeats (CRISPR) and CRISPR-associated protein 9 (Cas9) system. Microinjection technique has also contributed widely to the production of various kinds of genome edited animal strains. A novel electroporation method, the “Technique for Animal Knockout system by Electroporation (TAKE)” method, is a simple and highly efficient tool that has accelerated the production of new strains. Gamete preservation is extremely useful for maintaining large numbers of these valuable strains as genetic resources in the long term. These reproductive technologies, including microinjection, TAKE method, and gamete preservation, strongly support biomedical research and the bio-resource banking of animal models. -
Generation of Hprt-Disrupted Rat Through Mouse←Rat ES Chimeras Ayako Isotani1,2, Kazuo Yamagata2,†, Masaru Okabe2 & Masahito Ikawa1,2
www.nature.com/scientificreports OPEN Generation of Hprt-disrupted rat through mouse←rat ES chimeras Ayako Isotani1,2, Kazuo Yamagata2,†, Masaru Okabe2 & Masahito Ikawa1,2 We established rat embryonic stem (ES) cell lines from a double transgenic rat line which harbours Received: 03 February 2016 CAG-GFP for ubiquitous expression of GFP in somatic cells and Acr3-EGFP for expression in sperm Accepted: 22 March 2016 (green body and green sperm: GBGS rat). By injecting the GBGS rat ES cells into mouse blastocysts Published: 11 April 2016 and transplanting them into pseudopregnant mice, rat spermatozoa were produced in mouse←rat ES chimeras. Rat spermatozoa from the chimeric testis were able to fertilize eggs by testicular sperm extraction combined with intracytoplasmic sperm injection (TESE-ICSI). In the present paper, we disrupted rat hypoxanthine-guanine phosphoribosyl transferase (Hprt) gene in ES cells and produced a Hprt-disrupted rat line using the mouse←rat ES chimera system. The mouse←rat ES chimera system demonstrated the dual advantages of space conservation and a clear indication of germ line transmission in knockout rat production. The investigation of gene functions has intensified following completion of genome projects in many species. A significant number of gene disrupted mouse lines have been produced using ES cells and the homologous recom- bination technique, for example, helping clarify the basic biology while serving as animal models for human diseases1. As a result, mice have replaced rats as the most popularly used experimental animal. However, rats retain advantages over mice as experimental animals2,3. Their bigger body size facilitates exper- imental operations and repeated collection of blood samples. -
A Critical Role for the Type I Interferon Receptor in Virus-Induced Autoimmune Diabetes in Rats
Diabetes Volume 66, January 2017 145 Natasha Qaisar,1 Suvana Lin,1 Glennice Ryan,1 Chaoxing Yang,2 Sarah R. Oikemus,3 Michael H. Brodsky,3 Rita Bortell,2 John P. Mordes,1 and Jennifer P. Wang1 A Critical Role for the Type I Interferon Receptor in Virus-Induced Autoimmune Diabetes in Rats Diabetes 2017;66:145–157 | DOI: 10.2337/db16-0462 The pathogenesis of human type 1 diabetes, character- is heritable but non-Mendelian, and genetic susceptibility loci ized by immune-mediated damage of insulin-producing are insufficient for predicting diabetes onset; most people b-cells of pancreatic islets, may involve viral infection. with risk alleles never become diabetic (2). Interaction of Essential components of the innate immune antiviral genes with environmental factors has been invoked as a response, including type I interferon (IFN) and IFN determinant of disease (3,4). Viral infection, particularly receptor–mediated signaling pathways, are candidates with enterovirus, is believed to be a key environmental mod- for determining susceptibility to human type 1 diabetes. Nu- ulator of T1D, and its possible role in pathogenesis has been PATHOPHYSIOLOGY merous aspects of human type 1 diabetes pathogenesis reviewed in detail (5,6). The mechanisms that underlie viral are recapitulated in the LEW.1WR1 rat model. Diabetes triggering of T1D remain unclear; b-cell infection, by- can be induced in LEW.1WR1 weanling rats challenged stander activation, antigenic spreading, and molecular with virus or with the viral mimetic polyinosinic:polycyti- mimicry have been proposed. Alternatively, viruses could dylic acid (poly I:C). We hypothesized that disrupting prevent T1D through immunoregulation or induction of thecognatetypeIIFNreceptor(typeIIFNa/b receptor [IFNAR]) to interrupt IFN signaling would prevent or delay protective immunity (7). -
Functional Proteome Analysis of Age Associated Prpc Knockout Mice Liver Along with Regulatory Response of Cytoskeleton Associated Tau Protein and Fatty Liver Disease
Functional proteome analysis of age associated PrPC knockout mice liver along with regulatory response of cytoskeleton associated tau protein and fatty liver disease. Dissertation For the award of the degree “Doctor rerum naturalium (Dr. rer. nat.)” in the Molecular Medicine Study Program at the Georg-August-University Göttingen Submitted by Amandeep Singh Arora From SAS Nagar (Punjab - India) Göttingen, 2015 i Members of the Thesis Committee: Supervisor: Name, Institute: Prof. Dr. Mathias Bähr, Department of Neurology, University Medical Center, Georg-August University, Göttingen Second member of the thesis committee: Name, Institute: Prof. Dr. Karsten Hanisch, Department of Neuropathology, University Medical Center, Georg-August University, Göttingen Third member of the thesis committee: Name, Institute: Prof. Dr. Mikael Simons, Max Planck Institute for Experimental Medicine, Göttingen Date of Disputation: 14-04-2015 ii DECLARATION Here I declare that my doctoral thesis entitled “Functional proteome analysis of age associated PrPC knockout mice liver along with regulatory response of cytoskeleton associated tau protein and fatty liver disease” has been written independently with no other sources and aids than quoted. Amandeep Singh Arora Göttingen, January 2015 iii Acknowledgments A long journey of more than three years has been interesting and adventurous but it would not have been possible to complete it without the blessings and support of my father Sr. Parlad singh and my mother Smt. Surinder kaur. So, I dedicate my PhD degree to my parents. Firstly, I would like to thanks my direct supervisor prof. Dr. Inga Zerr for giving me opportunity to do PhD in the prion research group and for her scientific and moral support during failures and successful of experiments.