Defects in the Cell Signaling Mediator Β-Catenin Cause the Retinal Vascular Condition FEVR
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Artificial Intelligence for Pediatric Ophthalmology
Artificial Intelligence for Pediatric Ophthalmology Julia E. Reid, MD m;y and Eric Eaton, PhDz Purpose of review Despite the impressive results of recent artificial intelligence (AI) applications to general ophthalmol- ogy, comparatively less progress has been made toward solving problems in pediatric ophthalmology using similar techniques. This article discusses the unique needs of pediatric ophthalmology patients and how AI techniques can address these challenges, surveys recent applications of AI to pediatric ophthalmology, and discusses future directions in the field. Recent findings The most significant advances involve the automated detection of retinopathy of prematurity (ROP), yielding results that rival experts. Machine learning (ML) has also been successfully applied to the clas- sification of pediatric cataracts, prediction of post-operative complications following cataract surgery, detection of strabismus and refractive error, prediction of future high myopia, and diagnosis of read- ing disability via eye tracking. In addition, ML techniques have been used for the study of visual development, vessel segmentation in pediatric fundus images, and ophthalmic image synthesis. Summary AI applications could significantly benefit clinical care for pediatric ophthalmology patients by opti- mizing disease detection and grading, broadening access to care, furthering scientific discovery, and improving clinical efficiency. These methods need to match or surpass physician performance in clinical trials before deployment with patients. Due to widespread use of closed-access data sets and software implementations, it is difficult to directly compare the performance of these approaches, and repro- ducibility is poor. Open-access data sets and software implementations could alleviate these issues, and encourage further AI applications to pediatric ophthalmology. Keywords pediatric ophthalmology, machine learning, artificial intelligence, deep learning INTRODUCTION atric ophthalmology, despite the pressing need. -
Supplementary Materials: Evaluation of Cytotoxicity and Α-Glucosidase Inhibitory Activity of Amide and Polyamino-Derivatives of Lupane Triterpenoids
Supplementary Materials: Evaluation of cytotoxicity and α-glucosidase inhibitory activity of amide and polyamino-derivatives of lupane triterpenoids Oxana B. Kazakova1*, Gul'nara V. Giniyatullina1, Akhat G. Mustafin1, Denis A. Babkov2, Elena V. Sokolova2, Alexander A. Spasov2* 1Ufa Institute of Chemistry of the Ufa Federal Research Centre of the Russian Academy of Sciences, 71, pr. Oktyabrya, 450054 Ufa, Russian Federation 2Scientific Center for Innovative Drugs, Volgograd State Medical University, Novorossiyskaya st. 39, Volgograd 400087, Russian Federation Correspondence Prof. Dr. Oxana B. Kazakova Ufa Institute of Chemistry of the Ufa Federal Research Centre of the Russian Academy of Sciences 71 Prospeсt Oktyabrya Ufa, 450054 Russian Federation E-mail: [email protected] Prof. Dr. Alexander A. Spasov Scientific Center for Innovative Drugs of the Volgograd State Medical University 39 Novorossiyskaya st. Volgograd, 400087 Russian Federation E-mail: [email protected] Figure S1. 1H and 13C of compound 2. H NH N H O H O H 2 2 Figure S2. 1H and 13C of compound 4. NH2 O H O H CH3 O O H H3C O H 4 3 Figure S3. Anticancer screening data of compound 2 at single dose assay 4 Figure S4. Anticancer screening data of compound 7 at single dose assay 5 Figure S5. Anticancer screening data of compound 8 at single dose assay 6 Figure S6. Anticancer screening data of compound 9 at single dose assay 7 Figure S7. Anticancer screening data of compound 12 at single dose assay 8 Figure S8. Anticancer screening data of compound 13 at single dose assay 9 Figure S9. Anticancer screening data of compound 14 at single dose assay 10 Figure S10. -
Analysis of Trans Esnps Infers Regulatory Network Architecture
Analysis of trans eSNPs infers regulatory network architecture Anat Kreimer Submitted in partial fulfillment of the requirements for the degree of Doctor of Philosophy in the Graduate School of Arts and Sciences COLUMBIA UNIVERSITY 2014 © 2014 Anat Kreimer All rights reserved ABSTRACT Analysis of trans eSNPs infers regulatory network architecture Anat Kreimer eSNPs are genetic variants associated with transcript expression levels. The characteristics of such variants highlight their importance and present a unique opportunity for studying gene regulation. eSNPs affect most genes and their cell type specificity can shed light on different processes that are activated in each cell. They can identify functional variants by connecting SNPs that are implicated in disease to a molecular mechanism. Examining eSNPs that are associated with distal genes can provide insights regarding the inference of regulatory networks but also presents challenges due to the high statistical burden of multiple testing. Such association studies allow: simultaneous investigation of many gene expression phenotypes without assuming any prior knowledge and identification of unknown regulators of gene expression while uncovering directionality. This thesis will focus on such distal eSNPs to map regulatory interactions between different loci and expose the architecture of the regulatory network defined by such interactions. We develop novel computational approaches and apply them to genetics-genomics data in human. We go beyond pairwise interactions to define network motifs, including regulatory modules and bi-fan structures, showing them to be prevalent in real data and exposing distinct attributes of such arrangements. We project eSNP associations onto a protein-protein interaction network to expose topological properties of eSNPs and their targets and highlight different modes of distal regulation. -
Frequency of Common Factors Leading to Leukocoria in Pediatric Age Group at Tertiary Care Eye Hospital: an Observational Study
Biostatistics and Biometrics Open Access Journal ISSN: 2573-2633 Research Article Biostat Biometrics Open Acc J Faisal’s Issue - January 2018 Copyright © All rights are reserved by Muhammad Faisal Fahim DOI: 10.19080/BBOAJ.2018.04.555636 Frequency of Common Factors Leading to Leukocoria in Pediatric Age Group at Tertiary Care Eye Hospital: An Observational Study Rizwana Dargahi1, Abdul Haleem1, Darikta Dargahi S1 and Muhammad Faisal Fahim2* 1Department of Ophthalmology, Shaheed Mohtarma Benazir Bhutto Medical University, Pakistan 2Department of Research & Development, Al-Ibrahim Eye Hospital, Pakistan Submission: November 27, 2017; Published: January 19, 2018 *Corresponding author: Muhammad Faisal Fahim, M.Sc. (Statistics), Statistician, Department of Research & Development, Al-Ibrahim Eye Hospital, Isra postgraduate Institute of Ophthalmology, Karachi, Pakistan, Tel: ; Email: Abstract Objective: To know the frequency of common factors leading to leukocoria in pediatric age group at a tertiary care eye hospital. Materials & methods: This was across sectional observational study carried out at Pediatric department, Al-Ibrahim eye hospital Karachi from February to July 2016. All patients younger than 10 years who presented with leukocoria were included. The excluding criteria were previous history of trauma and ocular surgery. Systemic as well as ocular examination and relevant investigations was done to know cause of was used to analyzed data. leukocoria. B. Scan was done in all the cases. If needed X-ray chest, CT scan & MRI orbit was done for confirming diagnosis. SPSS version 20.0 Results: In our country congenital cataract is the most common cause of leukocoria which comprises about 77.3% (133/172) which is treatable. 2nd common cause was persistent fetal vasculature comprises 8.1% (14/172). -
Glaucoma in the Hallermann-Streiff Syndrome
Brit. j. Ophthal. (1970) 54, 4I6 Br J Ophthalmol: first published as 10.1136/bjo.54.6.416 on 1 June 1970. Downloaded from Glaucoma in the Hallermann-Streiff syndrome D. J. HOPKINS AND E. C. HORAN Department of Ophthalmology, University ofLeeds The Hallermann-Streiff syndrome is a complex association of developmental anomalies principally involving structures of ectodermal origin. The constant expressions of the syndrome are dyscephaly with mandibulo-facial malformation, bilateral congenital cataracts, and dental anomalies, while hypotrichosis, cutaneous atrophy, microphthalmos, and proportionate dwarfism are frequently present (Table I) (Ponte, I962). Numerous inconstant ocular features have been described, including anti-mongoloid palpebral fissures, blue sclerae, keratoglobus, malformation of the drainage angles, peripheral anterior synechiae, iris atrophy, persistent pupillary membrane, posterior synechiae, membranous cataract, amorphous retrolenticular membrane, vitreous opacities, pale optic discs, colobomata at the optic nerve entrance, retinal folds, various atrophic chorio- retinal changes and glaucoma (Table II) (Ludwig and Korting, I950; Fransois, I958; Falls and Schull, I 960; Wolter and Jones, I 965; Ide and Webb, I 969). copyright. Table I Mainfeatures of the Hallermann-Streiff syndrome. A. Constant B. Frequently present i. Dyscephaly with mandibulo-facial malformation 4. Hypotrichosis 2. Bilateral congenital cataracts 5. Cutaneous atrophy 3. Dental anomalies 6. Microphthalmos http://bjo.bmj.com/ 7. Proportionate dwarfism Table II Inconstant ocularfeatures of the Hallermann-Streiff syndrome. I. Anti-mongoloid 5. Peripheral anterior 9. Membranous cataract 13. Colobomata at optic palebral fissures synechiae nerve entrance on September 29, 2021 by guest. Protected 2. Blue sclerae 6. Iris atrophy jo. Amorphous retrolen- ,.,,, 2a. Blue sclerae 6. Iris atrophy ticular membrane 14. -
ZNF408 Polyclonal Antibody
PRODUCT DATA SHEET Bioworld Technology,Inc. ZNF408 polyclonal antibody Catalog: BS71268 Host: Rabbit Reactivity: Human,Mouse,Rat BackGround: by affinity-chromatography using epitope-specific im- Zinc-finger proteins contain DNA-binding domains and munogen and the purity is > 95% (by SDS-PAGE). have a wide variety of functions, most of which encom- Applications: pass some form of transcriptional activation or repression. WB 1:500 - 1:2000 The majority of zinc-finger proteins contain a Krüp- IHC 1:50 - 1:200 pel-type DNA binding domain and a KRAB domain, Storage&Stability: which is thought to interact with KAP1, thereby recruit- Store at 4°C short term. Aliquot and store at -20°C long ing histone modifying proteins. As a member of the term. Avoid freeze-thaw cycles. Krüppel C2H2-type zinc-finger protein family, ZNF396 Specificity: (zinc finger protein 396), also known as PRDM17 (PR ZNF408 polyclonal antibody detects endogenous levels domain zinc finger protein 17), is a 720 amino acid nu- of ZNF408 protein. clear protein that contains 10 C2H2-type zinc fingers. The DATA: gene encoding ZNF408 maps to human chromosome 11, which houses over 1,400 genes and comprises nearly 4% of the human genome. Jervell and Lange-Nielsen syn- drome, Jacobsen syndrome, Niemann-Pick disease, he- reditary angioedema and Smith-Lemli-Opitz syndrome are associated with defects in genes that maps to chro- mosome 11. Product: Western blot analysis of extracts of various cells, using ZNF408 anti- Rabbit IgG, 1mg/ml in PBS with 0.02% sodium azide, body. 50% glycerol, pH7.2 Note: Molecular Weight: For research use only, not for use in diagnostic procedure. -
Newfound Coding Potential of Transcripts Unveils Missing Members Of
bioRxiv preprint doi: https://doi.org/10.1101/2020.12.02.406710; this version posted December 3, 2020. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY 4.0 International license. 1 Newfound coding potential of transcripts unveils missing members of 2 human protein communities 3 4 Sebastien Leblanc1,2, Marie A Brunet1,2, Jean-François Jacques1,2, Amina M Lekehal1,2, Andréa 5 Duclos1, Alexia Tremblay1, Alexis Bruggeman-Gascon1, Sondos Samandi1,2, Mylène Brunelle1,2, 6 Alan A Cohen3, Michelle S Scott1, Xavier Roucou1,2,* 7 1Department of Biochemistry and Functional Genomics, Université de Sherbrooke, Sherbrooke, 8 Quebec, Canada. 9 2 PROTEO, Quebec Network for Research on Protein Function, Structure, and Engineering. 10 3Department of Family Medicine, Université de Sherbrooke, Sherbrooke, Quebec, Canada. 11 12 *Corresponding author: Tel. (819) 821-8000x72240; E-Mail: [email protected] 13 14 15 Running title: Alternative proteins in communities 16 17 Keywords: alternative proteins, protein network, protein-protein interactions, pseudogenes, 18 affinity purification-mass spectrometry 19 20 1 bioRxiv preprint doi: https://doi.org/10.1101/2020.12.02.406710; this version posted December 3, 2020. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY 4.0 International license. 21 Abstract 22 23 Recent proteogenomic approaches have led to the discovery that regions of the transcriptome 24 previously annotated as non-coding regions (i.e. -
Guidelines for Universal Eye Screening in Newborns Including RETINOPATHY of Prematurity
GUIDELINES FOR UNIVERSAL EYE SCREENING IN NEWBORNS INCLUDING RETINOPATHY OF PREMATURITY RASHTRIYA BAL SWASthYA KARYAKRAM Ministry of Health & Family Welfare Government of India June 2017 MESSAGE The Ministry of Health & Family Welfare, Government of India, under the National Health Mission launched the Rashtriya Bal Swasthya Karyakram (RBSK), an innovative and ambitious initiative, which envisages Child Health Screening and Early Intervention Services. The main focus of the RBSK program is to improve the quality of life of our children from the time of birth till 18 years through timely screening and early management of 4 ‘D’s namely Defects at birth, Development delays including disability, childhood Deficiencies and Diseases. To provide a healthy start to our newborns, RBSK screening begins at birth at delivery points through comprehensive screening of all newborns for various defects including eye and vision related problems. Some of these problems are present at birth like congenital cataract and some may present later like Retinopathy of prematurity which is found especially in preterm children and if missed, can lead to complete blindness. Early Newborn Eye examination is an integral part of RBSK comprehensive screening which would prevent childhood blindness and reduce visual and scholastic disabilities among children. Universal newborn eye screening at delivery points and at SNCUs provides a unique opportunity to identify and manage significant eye diseases in babies who would otherwise appear healthy to their parents. I wish that State and UTs would benefit from the ‘Guidelines for Universal Eye Screening in Newborns including Retinopathy of Prematurity’ and in supporting our future generation by providing them with disease free eyes and good quality vision to help them in their overall growth including scholastic achievement. -
Findings of Perinatal Ocular Examination Performed on 3573
BJO Online First, published on February 20, 2013 as 10.1136/bjophthalmol-2012-302539 Br J Ophthalmol: first published as 10.1136/bjophthalmol-2012-302539 on 20 February 2013. Downloaded from Clinical science Findings of perinatal ocular examination performed on 3573, healthy full-term newborns Li-Hong Li,1 Na Li,1 Jun-Yang Zhao,2 Ping Fei,3 Guo-ming Zhang,4 Jian-bo Mao,5 Paul J Rychwalski6 1Maternal and Children’s ABSTRACT children who despite screening go undetected with Hospital, Kunming, Yunnan, Objective To document the findings of a newborn eye respect to vision and eye disorders. A careful China 2Beijing Tongren Ophthalmic examination programme for detecting ocular pathology review of Pubmed revealed no published literature Center, Capital University of in the healthy full-term newborn. on the universality, much less the sensitivity and Medical Sciences, Beijing, Methods This is a cross-sectional study of the majority false-negative rate of RRT of normal newborns. China 3 of newborns born in the Kunming Maternal and Child Further, this age group has not been studied exten- Shanghai Xinhua Hospital, Healthcare Hospital, China, between May 2010 and sively and the actual prevalence of ocular abnor- Shanghai, China 4Shenzhen Eye Hospital, Jinan June 2011. Infants underwent ocular examination within malities, transient and permanent, is largely University, Shenzhen, China 42 days after birth using a flashlight, retinoscope, hand- unknown. There are few previous studies looking 5Eye Hospital of Wenzhou held slit lamp microscope and wide-angle digital retinal at the incidence of retinal haemorrhages in healthy Medical College, Wenzhou, image acquisition system. -
Approach to Leukocoria Intro Hi Everyone, My Name Is
PedsCases Podcast Scripts This is a text version of a podcast from Pedscases.com on the “Approach to Leukocoria.” These podcasts are designed to give medical students an overview of key topics in pediatrics. The audio versions are accessible on iTunes or at www.pedcases.com/podcasts. Approach to Leukocoria Developed by Chris Novak, Dr. Natashka Pollock and Dr. Mel Lewis for PedsCases.com. March 1, 2016 Intro Hi everyone, my name is Chris Novak. I am a medical student at the University of Alberta. Today’s podcast is designed to give medical students an organized approach to the physical exam finding of leukocoria, or an abnormal red reflex in children. This podcast was developed with Dr. Melanie Lewis, a general pediatrician and Professor at the University of Alberta and Dr. Natashka Pollock, a pediatric ophthalmologist at the Stollery Children’s Hospital in Edmonton, Alberta. The term leukocoria refers to a “white pupil” when examining the eye. In some cases leukocoria may be grossly apparent, or may be noticed by parents in photographs, however it is often an incidental finding on physical exam. While leukocoria is not a common finding, it is a critical sign of vision- and potentially life-threatening conditions including cataracts, hemorrhage, and malignancy like retinoblastoma. Different causes of leukocoria can present from the neonatal period and throughout childhood hence,the American Academy of Pediatrics recommends that all neonates have their red reflex examined before discharge from hospital, and subsequently at all well-child visits. Thus, it is important that all physicians looking after children recognize the critical nature of this presentation so that it is not missed. -
Supporting Information
Supporting Information Collin et al. 10.1073/pnas.1220864110 SI Materials and Methods Mutation Analysis of PASK and ZNF408. The two candidate variants Human Subjects. A detailed clinical description of familial exudative that were left after linkage and exome analysis were analyzed in vitreoretinopathy (FEVR) family W05-215 has been reported family W05-215 with Sanger sequencing of exon 6 of proline- previously (1), and clinical details of the affected individuals alanine-rich ste20-related kinase (PASK) and exon 5 of zinc studied using next-generation sequencing (NGS) (III:5 and V:2) finger protein 408 (ZNF408). Primer sequences are available are summarized below. Eight affected individuals, three un- on request. The presence of these two changes in additional affected individuals, and three spouses participated in the ge- Dutch FEVR probands and 110 control individuals was ana- netic analysis (Fig. S1A). After linkage and exome sequencing lyzed via restriction fragment length polymorphism analysis, analysis were performed, three additional affected relatives using AflIII for the c.791dup change in PASK and SfaNI for the (IV:10, IV:11, and V:7) were sampled. Clinical details of the c.1363C>T change in ZNF408. All exons and intron–exon two individuals with FEVR from family W05-220 (IV:3 and boundaries of ZNF408 were amplified under standard PCR V:2) are summarized below. Furthermore, 132 individuals with conditions using primers that are available on request. Sanger FEVR (8 from The Netherlands, 64 from the United Kingdom, sequence analysis was performed with the ABI PRISM Big Dye 55 from Japan, and 5 from Switzerland) participated in this Terminator Cycle Sequencing V2.0 Ready Reaction Kit and study, along with 110 ethnically matched Dutch and 191 eth- an ABI PRISM 3730 DNA analyzer (Applied Biosystems). -
Abnormal Red Reflex: Etiologies in a Pediatric Ophthalmology Population
CPJXXX10.1177/0009922820916892Clinical PediatricsLin et al 916892research-article2020 Article Clinical Pediatrics 2020, Vol. 59(8) 760 –765 Abnormal Red Reflex: Etiologies in a © The Author(s) 2020 Article reuse guidelines: sagepub.com/journals-permissions Pediatric Ophthalmology Population DOI:https://doi.org/10.1177/0009922820916892 10.1177/0009922820916892 journals.sagepub.com/home/cpj Sophie Y. Lin, BA1 , Kimberly G. Yen, MD1,2, Huirong Zhu, PhD2, Alexis Moisiuc, BS2, and Madhuri Chilakapati, MD1,2 Abstract Children who present with an abnormal red reflex (ARR) are often referred to ophthalmology due to concern for retinoblastoma. However, an ARR can indicate a wide variety of pathologies, all of which have the potential to develop amblyopia and irreversible vision loss. In this retrospective cohort study, we demonstrate that children who presented with an ARR had a mean age of 22.0 ± 32.5 months and were more frequently referred by their pediatricians (74.5%). The majority of these patients (61.8%) had a normal examination on further evaluation, followed by refractive error (20.4%). Amblyopia was diagnosed in 83.9% of patients with refractive error, with a mean age of 50.3 ± 49.2 months. Because many ARR-associated pathologies require time-sensitive treatment to prevent vision loss, proper screening is critical for diagnosis. Pediatricians play a key role in screening, so education on more common ARR pathologies can better facilitate referrals and improve outcomes. Keywords abnormal red reflex, leukocoria, screening Introduction to any ocular condition that limits visual stimulation to the eye so if amblyopia is not treated early, vision loss Eliciting the red reflex is a useful clinical test used by can be irreversible.