Clinical Predictors and Genetic Determinants of Response to Warfarin Therapy in Kenyan Patients David Gitonga Nyamu
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UNIVERSITY OF NAIROBI CLINICAL PREDICTORS AND GENETIC DETERMINANTS OF RESPONSE TO WARFARIN THERAPY IN KENYAN PATIENTS DAVID GITONGA NYAMU, BPharm (UoN), MPharm (UoN), Fellow, Implementation Science (UoN/UMB) U80/52841/2018 Thesis Submitted in Fulfilment of Requirements for the Award of Doctor of Philosophy (PhD) in Clinical Pharmacy of the University of Nairobi Department of Pharmaceutics & Pharmacy Practice 2019 i ii SIMILARITY INDEX AND ORIGINALITY REPORT iii iv DEDICATION This work is dedicated to my family members, especially my wife, Lydia Gitonga, and our children, Alvin Gitonga and Belva Gitonga, who kept on motivating and reminding me that I was equal to the task whenever I felt down. Additionally, you patiently missed me at home during the tedious data collection, analysis and Thesis writing. Special dedication to my parents, for your endless love towards academics and for imparting the value of education on me early in childhood. v ACKNOWLEDGEMENTS I wish to recognize and thank all my supporters of academic dreams and aspiration throughout my entire education life. I wish to sincerely thank my great Supervisors, Professors: A.N. Guantai, G.O. Osanjo and E. Aklillu, for your relentless guidance and instilling in me the spirit of hard work through your very constructive criticisms. Thank you for taking huge portions of your busy schedules and dedicating it to my work without a single penny. Special gratitude to Professor Osanjo for thoroughly scrutinizing what went on the paper. Exceptional acknowledgements to Professor Guantai for your persistence and driving force towards completion of this Thesis. Many thanks to Institutional Review Board, Kenyatta National Hospital/University of Nairobi- Ethics and Research Committee (KNH/UoN-ERC) for approving the study protocol. Thanks to the Head of Department of Medicine (KNH), Dr Paul Etau, and Head of Department of Surgery, Dr Bernard Githae as well as section Head of Cardiothoracic Surgery, Dr Tom Omulo for granting permission to carry the study in the designated anticoagulation clinics. Thanks to Chairman, Department of Haematology & Blood Transfusion (UoN), Prof. W. Mwanda, for allowing me to carry out INR tests in the facility. I also wish to thank the members of staff in the haemato-oncology, cardiothoracic and medical clinics for their immeasurable support during data collection. Special thanks to my collaborators especially the National Commission for Science, Technology & Innovation (NACOSTI) for funding part of this study. I am grateful to University of Nairobi for waiving my tuition fees for the Doctorate study. Many thanks to the staff of African institute for Biomedical Science and Technology (AiBST) laboratory for allowing me store study samples as well as perform DNA extraction in the premises. Thanks to Professor Wallace Bulimo for freely allowing me to quantify the DNA yields in Wellcome Trust Research Laboratory. Gratitude to Dr Aron Abera of Inqaba Biotechnical Industries (Pty), South Africa, for allowing genetic testing in their laboratory. vi I am greatly indebted to all my research assistants of whom I could not do without. To name but a few, thanks to Ephraim Mugane (school of Nursing Sciences, UoN), John Nyakwaka Opiyo and Kenneth Meme (Bleeding Centre, KNH), Gladys Wambui Muthoni (Department of Pharmaceutics & Pharmacy Practice, UoN), Daniel Juma (Department of Pharmacology & Pharmacognosy, UoN) and Richard Achoki (Department of Pharmaceutics & Pharmacy Practice, UoN). Thanks to Philomena Wangui (South End Cybercafé) for providing free internet services when I absolutely needed it. I also acknowledge my biostatistician, Albert Kimtai Tele for providing statistical consultancy services as well as spending precious time in statistical analysis. Many thanks to all patients who were undergoing anticoagulation management at Kenyatta Hospital for willingly and tirelessly agreeing to participate as well as providing blood samples for the study. I thank the LORD ALMIGHTY for making me who I am and for giving me the greatest gift of all, life. vii TABLE OF CONTENTS SIMILARITY INDEX AND ORIGINALITY REPORT ........................................................... iii APPROVAL BY SUPERVISORS ............................................ Error! Bookmark not defined. DEDICATION ................................................................................................................ iv ACKNOWLEDGEMENTS ................................................................................................ vi TABLE OF CONTENTS ................................................................................................. viii LIST OF TABLES ............................................................................................................. xv LIST OF FIGURES .......................................................................................................... xix LIST OF EQUATIONS...................................................................................................... xx ABBREVIATIONS AND ACRONYMS .............................................................................. xxi DEFINITION OF TERMS .............................................................................................. xxiii PUBLICATIONS FROM THESIS WORK .......................................................................... xxv ABSTRACT .................................................................................................................. xxvi CHAPTER ONE: INTRODUCTION .................................................................................... 1 1.1: Background to the Research................................................................................................. 1 1.2: Demographics and Doses of Warfarin among Patients ........................................................ 2 1.3: Monitoring of Response to Warfarin Therapy ..................................................................... 3 1.4: Factors Impacting on Warfarin Dose Variations among Patients ........................................ 4 1.5: Statement of the Research Problem ..................................................................................... 7 1.6: Research Questions .............................................................................................................. 9 1.7: Objectives of the Study ...................................................................................................... 10 1.7.1: General Objective ........................................................................................................ 10 1.7.2: Specific Objectives ...................................................................................................... 10 1.8: Research Hypothesis .......................................................................................................... 11 1.9: Justification of the Study .................................................................................................... 12 viii CHAPTER TWO: LITERATURE REVIEW ......................................................................... 14 2.1: Perspectives of Literature Review ..................................................................................... 14 2.2: Types of Thrombotic Disorders ......................................................................................... 14 2.3: Epidemiology of Thromboembolic events ......................................................................... 15 2.4: Risk factors for Development of Thromboembolism ........................................................ 16 2.5: Long Term Management of Thromboembolic events ....................................................... 16 2.6: Mechanisms of Action of Warfarin.................................................................................... 17 2.7: Clinical Uses and Doses of Warfarin ................................................................................. 18 2.8: Practical Uses of Warfarin ................................................................................................. 19 2.9: Adverse Effects of Warfarin .............................................................................................. 20 2.10: Drug Interactions among Patients Receiving Warfarin Therapy ..................................... 21 2.11: Warfarin interactions with other diseases, drugs and herbs ............................................. 22 2.12: Monitoring of the Therapeutic Response to Warfarin ..................................................... 23 2.13: Management of Excessive Anticoagulation with warfarin ............................................. 23 2.14: Pharmacogenomics of Warfarin ....................................................................................... 23 2.14.1: Vitamin K Epoxide Reductase Complex (VKORC1) ................................................ 24 2.14.2: Cytochrome P450 2C9 (CYP 2C9) ............................................................................ 25 2.14.3: Cytochrome P450 4F2 (CYP 4F2) ............................................................................ 26 2.15: Pharmacogenomic Studies Characterizing Warfarin Metabolizing Enzymes ................. 28 2.15.1: Population Distribution of Allelic Frequencies of Warfarin Metabolizing Genes .... 29 2.15.2: Genetic Factors affecting the Response to Warfarin Therapy ................................... 31 2.16: Gaps in Literature ............................................................................................................