(Danian) Belgium, Netherlands): W
Total Page:16
File Type:pdf, Size:1020Kb
Load more
Recommended publications
-
SI Appendix for Hopkins, Melanie J, and Smith, Andrew B
Hopkins and Smith, SI Appendix SI Appendix for Hopkins, Melanie J, and Smith, Andrew B. Dynamic evolutionary change in post-Paleozoic echinoids and the importance of scale when interpreting changes in rates of evolution. Corrections to character matrix Before running any analyses, we corrected a few errors in the published character matrix of Kroh and Smith (1). Specifically, we removed the three duplicate records of Oligopygus, Haimea, and Conoclypus, and removed characters C51 and C59, which had been excluded from the phylogenetic analysis but mistakenly remain in the matrix that was published in Appendix 2 of (1). We also excluded Anisocidaris, Paurocidaris, Pseudocidaris, Glyphopneustes, Enichaster, and Tiarechinus from the character matrix because these taxa were excluded from the strict consensus tree (1). This left 164 taxa and 303 characters for calculations of rates of evolution and for the principal coordinates analysis. Other tree scaling methods The most basic method for scaling a tree using first appearances of taxa is to make each internal node the age of its oldest descendent ("stand") (2), but this often results in many zero-length branches which are both theoretically questionable and in some cases methodologically problematic (3). Several methods exist for modifying zero-length branches. In the case of the results shown in Figure 1, we assigned a positive length to each zero-length branch by having it share time equally with a preceding, non-zero-length branch (“equal”) (4). However, we compared the results from this method of scaling to several other methods. First, we compared this with rates estimated from trees scaled such that zero-length branches share time proportionally to the amount of character change along the branches (“prop”) (5), a variation which gave almost identical results as the method used for the “equal” method (Fig. -
Relative Biodiversity Trends of the Cenozoic Caribbean Region
University of Tennessee, Knoxville TRACE: Tennessee Research and Creative Exchange Doctoral Dissertations Graduate School 12-2003 Relative biodiversity trends of the Cenozoic Caribbean Region : investigations of possible causes and issues of scale using a biostratigraphic database of corals, echinoids, bivalves, and gastropods William Gray Dean Follow this and additional works at: https://trace.tennessee.edu/utk_graddiss Recommended Citation Dean, William Gray, "Relative biodiversity trends of the Cenozoic Caribbean Region : investigations of possible causes and issues of scale using a biostratigraphic database of corals, echinoids, bivalves, and gastropods. " PhD diss., University of Tennessee, 2003. https://trace.tennessee.edu/utk_graddiss/5124 This Dissertation is brought to you for free and open access by the Graduate School at TRACE: Tennessee Research and Creative Exchange. It has been accepted for inclusion in Doctoral Dissertations by an authorized administrator of TRACE: Tennessee Research and Creative Exchange. For more information, please contact [email protected]. To the Graduate Council: I am submitting herewith a dissertation written by William Gray Dean entitled "Relative biodiversity trends of the Cenozoic Caribbean Region : investigations of possible causes and issues of scale using a biostratigraphic database of corals, echinoids, bivalves, and gastropods." I have examined the final electronic copy of this dissertation for form and content and recommend that it be accepted in partial fulfillment of the equirr ements for -
Late Cretaceous Echinoderm 'Odds and Ends' from the Low Countries
Special Issue Contemp.Trends.Geosci.,7(3),2018,255-282 DOI: 10.2478/ctg-2018-0018 Late Cretaceous echinoderm ‘odds and ends’ from the Low Countries John W.M. Jagt1,*, Barry W.M. van Bakel2, Mart J.M. Deckers3, Stephen K. Donovan4, René H.B. Fraaije2, Elena A. Jagt-Yazykova5, Johan Laffineur6, Eric Nieuwenhuis7, Bruno Thijs8 1Natuurhistorisch Museum Maastricht, de Bosquetplein 6-7, 6211 KJ Maastricht, the Netherlands 2Oertijdmuseum, Bosscheweg 80, 5283 WB Boxtel, the Netherlands 3Industriestraat 21, 5931 PG Tegelen, the Netherlands 4Naturalis Biodiversity Center, Taxonomy and Systematics Group, Postbus 9517, 2300 RA Leiden, the Netherlands 5Uniwersytet Opolski, Katedra Biosystematyki, Pracownia Paleobiologii i Ewolucji, ul. Oleska 22, 45-052 Opole, Poland 6Olympialaan 1, bus 4, 3630 Maasmechelen, Belgium 7Hub. Ortmansstraat 4, 6286 EA Partij-Wittem, the Netherlands 8Universiteit Utrecht, Faculteit Geowetenschappen, Princetonlaan 8a, 3584 CB Utrecht, the Netherlands *Corresponding author: [email protected] Received: 19th July, 2018 Accepted: 29th October, 2018 Abstract From various levels within the Gulpen and Maastricht formations (upper lower to upper upper Maastrichtian, c. 69.5–66 Ma) in the extended type area of the Maastrichtian Stage (southeast Netherlands, northeast Belgium and the Aachen area in Germany), a few recent additions to echinoderm faunas are illustrated and briefly discussed. Added are some erratic, flint-preserved, pre-Maastrichtian echinoid taxa from Pleistocene fluvial gravel deposits; these are of palaeogeographical interest. Crinoids include the comatulid Semiometra saskiae with traces of sublethal predation and several bourgueticrinines. Amongst the latter, the species Dunnicrinus aequalis is found preserved in biocalcarenites as well as in flint, comprising a near-complete specimen with a spectacular, semi- closed crown and a number of dissolved thecae in nodules with flint-filled, 3D-preserved nerve canals. -
Of Living and Fossil Echinoids 1924-1970
Index of Living and Fossil Echinoids 1924-1970 PORTER M. KIER and MARY HURD LAWSON SMITHSONIAN CONTRIBUTIONS TO PALEOBIOLOGY NUMBER 34 SERIES PUBLICATIONS OF THE SMITHSONIAN INSTITUTION Emphasis upon publication as a means of "diffusing knowledge" was expressed by the first Secretary of the Smithsonian. In his formal plan for the Institution, Joseph Henry outlined a program that included the following statement: "It is proposed to publish a series of reports, giving an account of the new discoveries in science, and of the changes made from year to year in all branches of knowledge." This theme of basic research has been adhered to through the years by thousands of titles issued in series publications under the Smithsonian imprint, commencing with Smithsonian Contributions to Knowledge in 1848 and continuing with the following active series: Smithsonian Contributions to Anthropology Smithsonian Contributions to Astrophysics Smithsonian Contributions to Botany Smithsonian Contributions to the Earth Sciences Smithsonian Contributions to the Marine Sciences Smithsonian Contributions to Paleobiology Smithsonian Contributions to Zoology Smithsonian Studies in Air and Space Smithsonian Studies in History and Technology In these series, the Institution publishes small papers and full-scale monographs that report the research and collections of its various museums and bureaux or of professional colleagues in the world cf science and scholarship. The publications are distributed by mailing lists to libraries, universities, and similar institutions throughout the world. Papers or monographs submitted for series publication are received by the Smithsonian Institution Press, subject to its own review for format and style, only through departments of the various Smithsonian museums or bureaux, where the manuscripts are given substantive review. -
A Total-Evidence Dated Phylogeny of Echinoids and the Evolution of Body
bioRxiv preprint doi: https://doi.org/10.1101/2020.02.13.947796; this version posted February 13, 2020. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC-ND 4.0 International license. 1 A Total-Evidence Dated Phylogeny of Echinoids and the Evolution of Body 2 Size across Adaptive Landscape 3 4 Nicolás Mongiardino Koch1* & Jeffrey R. Thompson2 5 1 Department of Geology & Geophysics, Yale University. 210 Whitney Ave., New Haven, CT 6 06511, USA 7 2 Research Department of Genetics, Evolution and Environment, University College London, 8 Darwin Building, Gower Street, London WC1E 6BT, UK 9 * Corresponding author. Email: [email protected]. Tel.: +1 (203) 432-3114. 10 Fax: +1 (203) 432-3134. 11 bioRxiv preprint doi: https://doi.org/10.1101/2020.02.13.947796; this version posted February 13, 2020. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC-ND 4.0 International license. MONGIARDINO KOCH & THOMPSON 12 Abstract 13 Several unique properties of echinoids (sea urchins) make them useful for exploring 14 macroevolutionary dynamics, including their remarkable fossil record that can be incorporated 15 into explicit phylogenetic hypotheses. However, this potential cannot be exploited without a 16 robust resolution of the echinoid tree of life. We revisit the phylogeny of crown group 17 Echinoidea using both the largest phylogenomic dataset compiled for the clade, as well as a 18 large-scale morphological matrix with a dense fossil sampling. -
Of Living and Fossil Echinoids 1971-2008
©Naturhistorisches Museum Wien, download unter www.biologiezentrum.at Ann. Naturhist. Mus. Wien, Serie A 112 195-470 Wien, Juni 2010 Index of Living and Fossil Echinoids 1971-2008 By Andreas KROH1 Manuscript submitted on November 20th 2009, the revised manuscript on January 21st 2010 Abstract All new taxa of fossil and living echinoids described from 1971 to 2008 are listed with their age, geographic and stratigraphic occurrence, repository of type material and bibliographic citation. Keywords: Echinodermata, Echinoidea, bibliography, species list, type material. Introduction Comprehensive listings of living and fossil echinoids for the species and genera estab- lished before 1970 were published by LAMBERT & THIÉRY (1909-25) and KIER & LAWSON (1978) respectively. KIER & LAWSON’s supplement for the years 1971-75 to their “Index of Living and Fossil Echinoids 1924-1970” has never been published. More than thirty years have passed since the latter publication and although the advent of information technology and the internet has made taxonomic research much easier, a comprehensive, up-to-date resource for echinoid species is still missing. At genus-level though, echinoids are de- scribed in detail in Andrew SMITH’s Echinoid Directory (http://www.nhm.ac.uk/research- curation/research/projects/echinoid-directory/index.html), an indispensible resource for anyone working with this group. This list was prepared utilizing a variety of resources, printed and online. The bulk of taxa was located by culling the current echinoderm literature for new taxa and by cross check- ing this list with the Zoological Record. Citations before 1971 are included if they were absent in LAMBERT & THIÉRY (1909-25) and KIER & LAWSON (1978). -
Palaeontologia Electronica PALAEODIVERSITY OF
Palaeontologia Electronica http://palaeo-electronica.org PALAEODIVERSITY OF CARIBBEAN ECHINOIDS INCLUDING NEW MATERIAL FROM THE VENEZUELAN NEOGENE Morana Mihaljević, Christian Klug, Orangel Aguilera, Thomas Lüthi and Marcelo R. Sánchez-Villagra ABSTRACT The extensive Venezuelan coastline is very important for understanding the evolu- tion of the Caribbean marine fauna. We report new fossil material collected from three Neogene fossil sites in the Falcón Basin and present the first diversity analysis of the known fossil echinoids from Venezuela and other Caribbean regions. Five species are reported for the first time from Venezuela. Each of the three fossil sites shows a differ- ent taxonomic composition, which may be a consequence of differing palaeoecological conditions during the Neogene. Furthermore, the environmental changes caused by the closure of the Central American Isthmus may also have played a role. The analysis of the Venezuelan echinoid fossil record, including the new herein described material, reveals three major diversity decreases and a maximal diversity peak in the Middle Miocene instead of the Eocene as it is the case in other Caribbean echinoid faunas. The first diversity decrease at the end of the Early Cretaceous, recognised by a gap in the fossil record, unfolds new research potential. The second one, around the Eocene- Oligocene boundary, is interpreted as an extinction event, as has been recognized for other echinoid and invertebrate faunas throughout the Caribbean. In contrast to other Caribbean invertebrate faunas, the cause of the third diversity decrease of echinoids throughout the Caribbean appears to be the beginning, instead of the end, of the clo- sure of the Central American Isthmus. -
A Total-Evidence Dated Phylogeny of Echinoids and the Evolution of Body
bioRxiv preprint doi: https://doi.org/10.1101/2020.02.13.947796; this version posted February 13, 2020. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC-ND 4.0 International license. 1 A Total-Evidence Dated Phylogeny of Echinoids and the Evolution of Body 2 Size across Adaptive Landscape 3 4 Nicolás Mongiardino Koch1* & Jeffrey R. Thompson2 5 1 Department of Geology & Geophysics, Yale University. 210 Whitney Ave., New Haven, CT 6 06511, USA 7 2 Research Department of Genetics, Evolution and Environment, University College London, 8 Darwin Building, Gower Street, London WC1E 6BT, UK 9 * Corresponding author. Email: [email protected]. Tel.: +1 (203) 432-3114. 10 Fax: +1 (203) 432-3134. 11 bioRxiv preprint doi: https://doi.org/10.1101/2020.02.13.947796; this version posted February 13, 2020. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC-ND 4.0 International license. MONGIARDINO KOCH & THOMPSON 12 Abstract 13 Several unique properties of echinoids (sea urchins) make them useful for exploring 14 macroevolutionary dynamics, including their remarkable fossil record that can be incorporated 15 into explicit phylogenetic hypotheses. However, this potential cannot be exploited without a 16 robust resolution of the echinoid tree of life. We revisit the phylogeny of crown group 17 Echinoidea using both the largest phylogenomic dataset compiled for the clade, as well as a 18 large-scale morphological matrix with a dense fossil sampling. -
(Cidaridae, Psychocidarinae) from Eastern Denmark
Contr. Tert. Quatern. Geol. 30(1-2) 41-73 15 figs, 4 tabs, 4 pis. Leiden, June 1993 Early Danian species of the echinoid genus Tylocidaris (Cidaridae, Psychocidarinae) from eastern Denmark Palle Gravesen Geological Museum Copenhagen, Denmark Palle. Danian of the echinoid from Denmark. — Contr. Gravesen, Early species genus Tylocidaris (Cidaridae, Psychocidarinae) eastern Tert. Quatern. Geol., 30(1-2): 41-73, 15 figs, 4 tabs, 4 pis. Leiden, June 1993. of the echinoid 1883 were used index fossils for the Danian Primary spines genus Tylocidaris Pomel, formerly widely as key (Early In their value such has been discredited and distribution has been shown be Palaeocene). recent years as tylocidarid species to diachronous in relation todinoflagellatebiostratigraphy as well as be facies-dependentto the extent that they are missing from important facies of Difficulties in correlation between the Danian of Denmark and southern Sweden have types the Danian. establishing a strata also affected their practical use. A biostratigraphical study based onspecimens collected bed by bed at Stevns Klint and additional studies localities situated in the Danian have evidence that the at Karlstrup quarry (both Stage type area, eastern Denmark), provided Early Danian tylocidarid zonation of Denmark and southern Sweden is essentially the same with T. oedumi Brünnich Nielsen, 1938 and T. for Limhamn abildgaardi Ravn, 1928 being restricted to two distinct zones, and thus not co-occurring as suggested by Brotzen (1959) the locality in Sweden. One major discrepancy between the Danish and Swedish biozonation schemes has thus been eliminated. Material collected shows that Middle Danian rosenkrantzi Zone is that this been at Karlstrup quarry an early present at locality, zone not having recorded from Denmark far.