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Laboratory Directed Research and Development Program LBNL/PUB-5515 Report on Ernest Orlando Lawrence Berkeley National Laboratory Laboratory Directed Research and Development Program FY 2006 Ernest Orlando Lawrence Berkeley National Laboratory Berkeley, CA 94720 Prepared for the U.S. Department of Energy under Contract No. DE-AC03-76SF00098 DISCLAIMER This document was prepared as an account of work sponsored by the United States Government. While this document is believed to contain correct information, neither the United States Government nor any agency thereof, nor The Regents of the University of California, nor any of their employees, makes any warranty, express or implied, or assumes any legal responsibility for the accuracy, completeness, or usefulness of any information, apparatus, product, or process disclosed, or represents that its use would not infringe privately owned rights. Reference herein to any specific commercial product, process, or service by its trade name, trademark, manufacturer, or otherwise, does not necessarily constitute or imply its endorsement, recommendation, or favoring by the United States Government or any agency thereof, or The Regents of the University of California. The views and opinions of authors expressed herein do not necessarily state or reflect those of the United States Government or any agency thereof or The Regents of the University of California. Lawrence Berkeley Laboratory is an equal opportunity employer. Table of Contents Introduction........................................................................................................................................................... ix Accelerator and Fusion Research Division......................................................................................................... 1 John Byrd High-Stability Beam Handling in Electron Storage Rings with William Waldron Applications to High Energy Colliders and Light Sources ............... .....1.. ............................... Andrzej Wolski Steven Lidia Critical Accelerator Technologies for Advanced Light Sources ...... .....2.. ....... ........................ et al Grant Logan Enabling High Energy Density Physics at LBNL.............................. .....3.. ....... ........................ Jonathan Wurtele Wim Leemans Max Zolotorev Low Energy Spread Electron Source.................................................. .....4.. ....... ........................ Eugene Commins Jim Oneill Fernando Sannibale Weishi Wan Advanced Light Source Division.......................................................................................................................... 5 Malcolm Howells Coherent X-Ray Diffraction Imaging (CXDI)................................... .....5.. ....... ........................ Anton Barty Henry Chapman Chris Jacobsen Janos Kirz Stefano Marchesini John Spence Uwe Weierstall Janos Kirz Lenless Imaging of Yeast Cells .......................................................... .....6.. ....... ........................ Matthew Marcus Measurement of Molecular Shape and Assembly Using X-ray et al Scattering.............................................................................................. .....7.. ............................... Michael Martin Left-Handed Nanoscale Meta-Materials: Towards the Optical Zhao Hao Domain ................................................................................................. .....8.. ............................... Eric Anderson J. Alexander Liddle Eli Rotenberg NanoARPES: A New Detector for Nanometer-scale Electronic Aaron Bostwick Structure Measurements ...................................................................... .....9.. ............................... Andreas Scholl Ultrafast Magnetization Dynamics ..................................................... ...1..0.. ....... ........................ Anthony Young Jun Feng Joachim Stöhr Howard Padmore Chemical Sciences Division................................................................................................................................. 11 Musahid Ahmed Gas Phase Studies of the Building Blocks of Life............................. ...1..1.. ....... ........................ Christopher Chang Oxygen Catalysis for Biomimetic Energy Conversion Chemistry ............................................................................................. ...1..2.. ............................... iii Harvey Gould Electron Electric Dipole Moment Experiment in a Cold Atom Fountain ................................................................................................ ...1..3.. ............................... Stephen Leone Time-resolved X-ray Absorption Spectroscopy of Metalloporphyrins................................................................................ ...1..4.. ............................... Daniel Neumark Spectroscopy and Dynamics of Pure and Doped Helium Nanodroplets ........................................................................................ ...1..5.. ............................... John Prausnitz Properties of New Ionic Liquids for Electrochemical Applications and for Extraction of Heavy-Metal Cations from Wastewaters ......................................................................................... ...1..6.. ............................... Thomas Rescigno Advanced Computational Methods for Photon-Molecule C. William McCurdy Collision Processes .............................................................................. ...1..7.. ............................... T. Don Tilley New Approach for the Catalytic Conversion of Methane and Other Inert Hydrocarbons.................................................................... ...1..8.. ............................... Tolek Tyliszczak Versatile Mini-Scanning Transmission X-ray Microscope David Shuh (mSTXM) ............................................................................................ ...1..9.. ............................... Computing Sciences (National Energy Research Scientific Computing Center, and Computational Research Divisions) .. 20 Olivier Chevassut Cryptographic Foundations for New Generation Distributed Abdelilah Essiari Systems................................................................................................. ...2..0.. ............................... Phillip Colella Analysis for Simulation of Nuclear Energy Systems ........................ ...2..1.. ....... ........................ David Konerding Software Application Infrastructure for Efficiently Managing Large-Scale Computational Biology Experiments ............................ ...2..2.. ............................... Victor Markowitz Integrated Microbial Community Genomes Data Management Natalia Ivanova System .................................................................................................. ...2..3.. ............................... Nikos Kyrpides Phil Hugenholtz Leonid Oliker Enhancing Commodity Scalar Processors with Vector John Shalf Components for Increased Scientific Productivity ............................ ...2..4.. ............................... KatherineYelick William Kramer Ali Pinar Advanced Computational Tools for Electric Power Systems ........... ...2..5.. ....... ........................ Bernard Lesieutre Chao Yang Juan Meza Raquel Romano Statistical Feature Modeling for Scientific Data Via Basis Decomposition ..................................................................................... ...2..6.. ............................... Jon Wilkening Extended First Order System Least Squares Finite Elements........... ...2..7.. ....... ........................ Earth Sciences Division ....................................................................................................................................... 28 Gary Andersen Microarray Technology for Fungal Identification: Its Utility from the Environment to Homeland Security, Biomedicine, and Beyond.................................................................................................. ...2..8.. ............................... Sally Benson Scientific Basis for Advance Geologic Storage Technologies ......... ...2..9.. ....... ........................ James Bishop Autonomous Sensors for Ocean Dissolved Organic Matter ............. ...3..0.. ....... ........................ Paul Luke iv John Coates An Investigation of the Microbial Processes Involved in Electron Transfer onto the Anode of a Biological Fuel Cell ............ ...3..1.. ............................... Donald DePaolo Micro-characterization and Chemical Micro-dynamics of John Christensen Atmospheric Mineral Dust.................................................................. ...3..2.. ............................... Benjamin Gilbert Behavior and Impact of Nanoparticles in the Environment.............. ...3..3.. ....... ........................ Hoi-Ying Holman Compositional and Functional Analysis of Cell Walls During Ping Hu Metal-bacterial Interactions ................................................................ ...3..4.. ............................... Sharon Borglin Norman Miller The California Water and Energy System: An Approach for Larry Dale Addressing Future Crises .................................................................... ...3..5.. ............................... George Moridis Interrelation of Global Warming and Hydrate Dissociation in Matthew Reagan Oceanic Accumulations....................................................................... ...3..6.. ............................... Seiji Nakagawa New Technology for Permeability
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