Genetic Divergence and Cryptic Speciation in Two Morphs of The
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Kinetic Effects of Temperature on Rates of Genetic Divergence and Speciation Andrew P
Kinetic effects of temperature on rates of genetic divergence and speciation Andrew P. Allen*†, James F. Gillooly‡, Van M. Savage§, and James H. Brown†¶ *National Center for Ecological Analysis and Synthesis, 735 State Street, Suite 300, Santa Barbara, CA 93101; ‡Department of Zoology, University of Florida, Gainesville, FL 32611; §Bauer Center for Genomics Research, Harvard University, Boston, MA 02138; and ¶Department of Biology, University of New Mexico, Albuquerque, NM 87131 Contributed by James H. Brown, May 2, 2006 Latitudinal gradients of biodiversity and macroevolutionary dy- dependence of mass-specific metabolic rate, B (J⅐secϪ1⅐gϪ1) namics are prominent yet poorly understood. We derive a model (12–14): that quantifies the role of kinetic energy in generating biodiver- Ϫ1/4 ϪE/kT ϪE/kT sity. The model predicts that rates of genetic divergence and B ϭ B͞M ϭ boM e ϭ Boe , [1] speciation are both governed by metabolic rate and therefore Ϫ1 show the same exponential temperature dependence (activation where B is individual metabolic rate (J sec ), M is body mass (g), ؋ 10؊19 J). Predictions are T is absolute temperature (K), Bo is a normalization parameter 1.602 ؍ energy of Ϸ0.65 eV; 1 eV Ϫ1 Ϫ1 supported by global datasets from planktonic foraminifera for independent of temperature (J⅐sec ⅐g ) that varies with body Ϫ1/4 rates of DNA evolution and speciation spanning 30 million years. size as Bo ϭ boM (12), and bo is a normalization parameter As predicted by the model, rates of speciation increase toward the independent of body size and temperature that varies among tropics even after controlling for the greater ocean coverage at taxonomic and functional groups (12, 17). -
Diversity of Norwegian Sea Slugs (Nudibranchia): New Species to Norwegian Coastal Waters and New Data on Distribution of Rare Species
Fauna norvegica 2013 Vol. 32: 45-52. ISSN: 1502-4873 Diversity of Norwegian sea slugs (Nudibranchia): new species to Norwegian coastal waters and new data on distribution of rare species Jussi Evertsen1 and Torkild Bakken1 Evertsen J, Bakken T. 2013. Diversity of Norwegian sea slugs (Nudibranchia): new species to Norwegian coastal waters and new data on distribution of rare species. Fauna norvegica 32: 45-52. A total of 5 nudibranch species are reported from the Norwegian coast for the first time (Doridoxa ingolfiana, Goniodoris castanea, Onchidoris sparsa, Eubranchus rupium and Proctonotus mucro- niferus). In addition 10 species that can be considered rare in Norwegian waters are presented with new information (Lophodoris danielsseni, Onchidoris depressa, Palio nothus, Tritonia griegi, Tritonia lineata, Hero formosa, Janolus cristatus, Cumanotus beaumonti, Berghia norvegica and Calma glau- coides), in some cases with considerable changes to their distribution. These new results present an update to our previous extensive investigation of the nudibranch fauna of the Norwegian coast from 2005, which now totals 87 species. An increase in several new species to the Norwegian fauna and new records of rare species, some with considerable updates, in relatively few years results mainly from sampling effort and contributions by specialists on samples from poorly sampled areas. doi: 10.5324/fn.v31i0.1576. Received: 2012-12-02. Accepted: 2012-12-20. Published on paper and online: 2013-02-13. Keywords: Nudibranchia, Gastropoda, taxonomy, biogeography 1. Museum of Natural History and Archaeology, Norwegian University of Science and Technology, NO-7491 Trondheim, Norway Corresponding author: Jussi Evertsen E-mail: [email protected] IntRODUCTION the main aims. -
The Bulletin of Zoological Nomenclature, Vol19, Part 3
Volume 19. Part 3. 28$. May, 1962 pp. 129-192. THE BULLETIN OF ZOOLOGICAL NOMENCLATURE The Official Organ of THE INTERNATIONAL COMMISSION ON ZOOLOGICAL NOMENCLATURE Contents Page Notices prescribed by the International Congress of Zoology : Date of commencement by the International Commission on Zoological Nomenclature of voting on applications published in the Bulletin of Zoological Nomenclature 129 Notice of the possible use by the International Commission on Zoological Nomenclature of its plenary powers in certain cases 129 (icontinued inside back wrapper) LONDON: Printed by Order of the International Trust for Zoological Nomenclature and Sold on behalf of the International Commission on Zoological Nomenclature by the International Trust at its Publications Office, 19, Belgrave Square, London, S.W.I 1962 Price Three Pounds (All rights reserved) Original from and digitized by National University of Singapore Libraries INTERNATIONAL COMMISSION ON ZOOLOGICAL NOMENCLATURE A. The Officers of the Commission President-. Professor James Chester Bradley (Cornell University, Ithaca, N.T., U.S.A.) (12 August 1953) Vice-President: Senhor Dr. Afranio do Amaral (Sao Paulo, Brazil) (12 August 1953) Secretary: Mr. N. D. Riley (British Museum (Natural History), London) (23 July 1958) Assistant Secretary: Dr. W. E. China (British Museum (Natural History), Cromwell Road, London, S.W. 7) B. The Members of the Commission (Arranged in order of precedence by reference to date of election or of most recent re-election, as prescribed by the International Congress of Zoology) Senhor Dr. Afranio do Amakal (S. Paulo, Brazil) (12 August 1953) (Vice-President) Professor J. Chester Bradley (Cornell University, Ithaca, N.Y., U.S.A.) (12 August 1953) (President) Professor Harold E. -
Lista Actualizada De Los Opistobranquios (Mollusca: Gastropoda: Opisthobranchia) De Las Costas Catalanas
SPIRA 2007 Vol. 2 Núm. 3 Pàg. 163-188 Rebut el 21 de setembre de 2007; Acceptat el 5 d’octubre de 2007 Lista actualizada de los opistobranquios (Mollusca: Gastropoda: Opisthobranchia) de las costas catalanas MANUEL BALLESTEROS VÁZQUEZ Departament de Biologia Animal, Facultat de Biologia, Universitat de Barcelona. Av. Diagonal 645, 08028 Barcelona. E-mail: [email protected] Resumen.—Lista actualizada de los opistobranquios (Mollusca: Gastropoda: Opisthobranchia) de las costas catalanas. Se presenta una lista taxonómica de las especies de opistobranquios (Mollusca: Gastropoda: Opisthobranchia) registradas hasta el presente en aguas litorales o de profundidad de las costas catalanas (NE Península Ibérica). Esta lista se basa en citas publicadas en la literatura, en citas fotográficas procedentes de Internet, en comunicaciones personales de buceadores y en numerosos datos inéditos de recolecciones del autor. De cada especie se indican las referencias bibliográficas, y en el caso de los datos no publicados o procedentes de Internet, se indican las localidades concretas donde se han recolectado u observado. En aguas catalanas se registran hasta el momento un total de 205 especies de opistobranquios: 36 de Cephalaspidea s.s., 9 de Architectibranchia, 7 de Anaspidea, 11 de Thecosomata, 3 de Gymnosomata, 14 de Sacoglossa, 2 de Umbraculacea, 8 de Pleurobranchacea y 115 de Nudibranchia (55 Doridina, 14 Dendronotina, 4 Arminina y 42 Aeolidina). De estas especies, tres de ellas se citan por vez primera para el litoral ibérico (Runcina adriatica, R. brenkoae y Tritonia lineata), mientras que otras siete más no habían sido recolectadas en el litoral catalán (Runcina coronata, R. ferruginea, Elysia translucens, Ercolania coerulea, Berthellina edwarsi, Doris ocelligera y Piseinotecus gabinieri). -
University of Southampton Research Repository Eprints Soton
University of Southampton Research Repository ePrints Soton Copyright © and Moral Rights for this thesis are retained by the author and/or other copyright owners. A copy can be downloaded for personal non-commercial research or study, without prior permission or charge. This thesis cannot be reproduced or quoted extensively from without first obtaining permission in writing from the copyright holder/s. The content must not be changed in any way or sold commercially in any format or medium without the formal permission of the copyright holders. When referring to this work, full bibliographic details including the author, title, awarding institution and date of the thesis must be given e.g. AUTHOR (year of submission) "Full thesis title", University of Southampton, name of the University School or Department, PhD Thesis, pagination http://eprints.soton.ac.uk UNIVERSITY OF SOUTHAMPTON FACULTY OF ENGINEERING, SCIENCE AND MATHEMATICS School of Ocean and Earth Science ECOLOGY OF THE INTERTIDAL CRAB DOTILLA INTERMEDIA FROM TSUNAMI-IMPACTED BEACHES IN THAILAND Christopher John Allen Thesis for the degree of Doctor of Philosophy April 2010 DECLARATION OF AUTHORSHIP I, Christopher John Allen , declare that the thesis entitled The Ecology of the intertidal crab Dotilla intermedia from tsunami-impacted beaches in Thailand and the work presented in the thesis are both my own, and have been generated by me as a result of my own original research. I confirm that: • This work was done wholly or mainly while in candidature for a research degree at this University; • Where any part of this thesis has been previously submitted for a degree or any other qualification at this University or any other institution, this has been clearly stated; • Where I have consulted the published work of others, this is always clearly attributed; • Where I have quoted from the work of others, the source is always given. -
Contribución Al Estudio Del Género Doto Oken, 1815 (Mollusca
Rev. Acad. Canar. Cienc, XXI (Niims. 3-4), 81-91 (2009) (publicado en septiembre de 2010) CONTRIBUCION AL ESTUDIO DEL GENERO Doto OKEN, 1815 (MOLLUSCA: NUDIBRANCHIA) EN CEUTA (ESPANA) CON LA DESCRIPCION DE NUEVAS ESPECIES Ortea, J.', Moro, L.-, Ocaiia, O.' & J. J. Bacallado' ' Departamento BOS, Universidad de Oviedo, Espana ^ Centro de Planificacion Ambiental, Ctra. La Esperanza km 0'8, -38071 Tenerife, islas Canarias - Departamento de Oceanografia Biologica y Biodiversidad, Fundacion Museo del Mar Muelle Canonero Dato s.n, 51001 Ceuta, North Africa, Espana. [email protected] "" Museo de Ciencias Naturales de Tenerife, Calle Fuente Morales, s/n. Apdo. 853 Santa Cruz de Tenerife, islas Canarias RESUMEN Se estudian cinco especies del genero Doto Oken, 1815, recolectadas en el literal de Ceuta, entre 2 y 35 m de profundidad, dos de ellas ya eran conocidas en dicha localidad D. floridicola y D. furva, una tercera, D. koenneckery, se cita por vez primera en Ceuta y las dos restantes se describen como nuevas para la ciencia: D. alidrisi, con grandes tuberculos en los ceratas que se insertan perpendiculares al eje del cerata formando una cruz y D. caba- lla, con un cuerpo robusto que se estrecha de manera brusca sobre la cola y unos ceratas muy globosos, con pigmentacion caracteristica. De todas las especies se aportan ilustraciones en color de los animales vivos. Palabras Clave: Mollusca, Nudibranchia, Doto, nuevas especies, Ceuta. ABSTRACT We have studied five species of the Doto Oken, 1815 genus, collected in Ceuta litoral (2 to 35 m depht). Two species, D. floridicola y D.furva, were known for the coast of Ceuta. -
Selection in Finite Populations with Multiple Alleles
SELECTION IN FINITE POPULATIONS WITH MULTIPLE ALLELES. 111. GENETIC DIVERGENCE WITH CENTRIPETAL SELECTION AND MUTATION B. D. H. LATTER Division of Animal Genetics, C.S.I.R.O., Sydney, N.S.W., Australia Manuscript received April 28, 1971 Revised copy received December 6, 1971 ABSTRACT Natural selection for an intermediate level of gene or enzyme activity has been shown to lead to a high frequency of heterotic polymorphisms in popula- tions subject to mutation and random genetic drift. The model assumes a sym- metrical spectrum of mutational variation, with the majority of variants having only minor effects on the probability of survival. Each mutational event produces a variant which is novel to the population. Allelic effects are assumed to be additive on the scale of enzyme activity, heterosis arising whenever a heterozygote has a mean level of activity closer to optimal than that of other genotypes in the population.-A new measure of genetic divergence between populations is proposed, which is readily interpreted genetically, and increases approximately linearly with time under centripetal selection, drift and muta- tion. The parameter is closely related to the rate of accumulation of muta- tional changes in a cistron over an evolutionary time span.--A survey of published data concerning polymorphic loci in man and Drosophila suggests than an alternative model, based on the superiority of hybrid molecules, is not of general importance. Thirteen loci giving rise to hybrid zones on electrophor- esis have a mean heterozygote frequency of 0 22 rfr .OS, compared with a value of 0.23 i: .04 for 16 loci classified as producing no hybrid enzyme. -
Prey Preference Follows Phylogeny: Evolutionary Dietary Patterns Within the Marine Gastropod Group Cladobranchia (Gastropoda: Heterobranchia: Nudibranchia) Jessica A
Goodheart et al. BMC Evolutionary Biology (2017) 17:221 DOI 10.1186/s12862-017-1066-0 RESEARCHARTICLE Open Access Prey preference follows phylogeny: evolutionary dietary patterns within the marine gastropod group Cladobranchia (Gastropoda: Heterobranchia: Nudibranchia) Jessica A. Goodheart1,2* , Adam L. Bazinet1,3, Ángel Valdés4, Allen G. Collins2 and Michael P. Cummings1 Abstract Background: The impact of predator-prey interactions on the evolution of many marine invertebrates is poorly understood. Since barriers to genetic exchange are less obvious in the marine realm than in terrestrial or freshwater systems, non-allopatric divergence may play a fundamental role in the generation of biodiversity. In this context, shifts between major prey types could constitute important factors explaining the biodiversity of marine taxa, particularly in groups with highly specialized diets. However, the scarcity of marine specialized consumers for which reliable phylogenies exist hampers attempts to test the role of trophic specialization in evolution. In this study, RNA- Seq data is used to produce a phylogeny of Cladobranchia, a group of marine invertebrates that feed on a diverse array of prey taxa but mostly specialize on cnidarians. The broad range of prey type preferences allegedly present in two major groups within Cladobranchia suggest that prey type shifts are relatively common over evolutionary timescales. Results: In the present study, we generated a well-supported phylogeny of the major lineages within Cladobranchia using RNA-Seq data, and used ancestral state reconstruction analyses to better understand the evolution of prey preference. These analyses answered several fundamental questions regarding the evolutionary relationships within Cladobranchia, including support for a clade of species from Arminidae as sister to Tritoniidae (which both preferentially prey on Octocorallia). -
An Annotated Checklist of the Marine Macroinvertebrates of Alaska David T
NOAA Professional Paper NMFS 19 An annotated checklist of the marine macroinvertebrates of Alaska David T. Drumm • Katherine P. Maslenikov Robert Van Syoc • James W. Orr • Robert R. Lauth Duane E. Stevenson • Theodore W. Pietsch November 2016 U.S. Department of Commerce NOAA Professional Penny Pritzker Secretary of Commerce National Oceanic Papers NMFS and Atmospheric Administration Kathryn D. Sullivan Scientific Editor* Administrator Richard Langton National Marine National Marine Fisheries Service Fisheries Service Northeast Fisheries Science Center Maine Field Station Eileen Sobeck 17 Godfrey Drive, Suite 1 Assistant Administrator Orono, Maine 04473 for Fisheries Associate Editor Kathryn Dennis National Marine Fisheries Service Office of Science and Technology Economics and Social Analysis Division 1845 Wasp Blvd., Bldg. 178 Honolulu, Hawaii 96818 Managing Editor Shelley Arenas National Marine Fisheries Service Scientific Publications Office 7600 Sand Point Way NE Seattle, Washington 98115 Editorial Committee Ann C. Matarese National Marine Fisheries Service James W. Orr National Marine Fisheries Service The NOAA Professional Paper NMFS (ISSN 1931-4590) series is pub- lished by the Scientific Publications Of- *Bruce Mundy (PIFSC) was Scientific Editor during the fice, National Marine Fisheries Service, scientific editing and preparation of this report. NOAA, 7600 Sand Point Way NE, Seattle, WA 98115. The Secretary of Commerce has The NOAA Professional Paper NMFS series carries peer-reviewed, lengthy original determined that the publication of research reports, taxonomic keys, species synopses, flora and fauna studies, and data- this series is necessary in the transac- intensive reports on investigations in fishery science, engineering, and economics. tion of the public business required by law of this Department. -
Ecological and Life History Characteristics Predict Population Genetic Divergence of Two Salmonids in the Same Landscape
Molecular Ecology (2004) 13, 3675–3688 doi: 10.1111/j.1365-294X.2004.02365.x EcologicalBlackwell Publishing, Ltd. and life history characteristics predict population genetic divergence of two salmonids in the same landscape ANDREW R. WHITELEY, PAUL SPRUELL and FRED W. ALLENDORF Division of Biological Sciences, University of Montana, Missoula, MT 59812, USA Abstract Ecological and life history characteristics such as population size, dispersal pattern, and mating system mediate the influence of genetic drift and gene flow on population subdivision. Bull trout (Salvelinus confluentus) and mountain whitefish (Prosopium williamsoni) differ markedly in spawning location, population size and mating system. Based on these differences, we predicted that bull trout would have reduced genetic variation within and greater differ- entiation among populations compared with mountain whitefish. To test this hypothesis, we used microsatellite markers to determine patterns of genetic divergence for each species in the Clark Fork River, Montana, USA. As predicted, bull trout had a much greater propor- tion of genetic variation partitioned among populations than mountain whitefish. Among all sites, FST was seven times greater for bull trout (FST = 0.304 for bull trout, 0.042 for moun- tain whitefish. After removing genetically differentiated high mountain lake sites for each species FST, was 10 times greater for bull trout (FST = 0.176 for bull trout; FST = 0.018 for mountain whitefish). The same characteristics that affect dispersal patterns in these species also lead to predictions about the amount and scale of adaptive divergence among popula- tions. We provide a theoretical framework that incorporates variation in ecological and life history factors, neutral divergence, and adaptive divergence to interpret how neutral and adaptive divergence might be correlates of ecological and life history factors. -
Divergence, Gene Flow, and Speciation in Eight Lineages of Trans‐Beringian Birds
Received: 2 May 2019 | Revised: 22 July 2020 | Accepted: 27 July 2020 DOI: 10.1111/mec.15574 ORIGINAL ARTICLE Divergence, gene flow, and speciation in eight lineages of trans-Beringian birds Jessica F. McLaughlin1,2 | Brant C. Faircloth3 | Travis C. Glenn4 | Kevin Winker1 1University of Alaska Museum, Fairbanks, AK, USA Abstract 2Sam Noble Oklahoma Museum of Natural Determining how genetic diversity is structured between populations that span the History, Norman, OK, USA divergence continuum from populations to biological species is key to understanding 3Department of Biological Sciences and Museum of Natural Science, Louisiana State the generation and maintenance of biodiversity. We investigated genetic divergence University, Baton Rouge, LA, USA and gene flow in eight lineages of birds with a trans-Beringian distribution, where 4 Department of Environmental Health Asian and North American populations have likely been split and reunited through Science and Institute of Bioinformatics, University of Georgia, Athens, GA, USA multiple Pleistocene glacial cycles. Our study transects the speciation process, in- cluding eight pairwise comparisons in three orders (ducks, shorebirds and passer- Correspondence Kevin Winker, University of Alaska Museum, ines) at population, subspecies and species levels. Using ultraconserved elements 907 Yukon Drive, Fairbanks, AK 99775, USA. (UCEs), we found that these lineages represent conditions from slightly differentiated Email: [email protected] populations to full biological species. Although allopatric speciation is considered Funding information the predominant mode of divergence in birds, all of our best divergence models in- National Science Foundation, Grant/Award Number: DEB-1242267-1242241-1242260 cluded gene flow, supporting speciation with gene flow as the predominant mode in Beringia. -
Advances in Studying the Role of Genetic Divergence And
Advances in studying the role of genetic divergence and recombination in adaptation in non-model species Ramprasad Neethiraj Academic dissertation for the Degree of Doctor of Philosophy in Population Genetics at Stockholm University to be publicly defended on Friday 22 February 2019 at 13.30 in Vivi Täckholmsalen (Q-salen), NPQ-huset, Svante Arrhenius väg 20. Abstract Understanding the role of genetic divergence and recombination in adaptation is crucial to understanding the evolutionary potential of species since they can directly affect the levels of genetic variation present within populations or species. Genetic variation in the functional parts of the genome such as exons or regulatory regions is the raw material for evolution, because natural selection can only operate on phenotypic variation already present in the population. When natural selection acts on a phenotype, it usually results in reduction in the levels of genetic variation at the causal loci, and the surrounding linked loci, due to recombination dynamics (i.e. linkage); the degree to which natural selection influences the genetic differentiation in the linked regions depends on the local recombination rates. Studies investigating the role of genetic divergence and recombination are common in model species such as Drosophila melanogaster. Only recently have genomic tools allowed us to start investigating their role in shaping genetic variation in non-model species. This thesis adds to the growing research in that domain. In this thesis, I have asked a diverse set of questions to understand the role of genetic divergence and recombination in adaptation in non-model species, with a focus on Lepidoptera. First, how do we identify causal genetic variation causing adaptive phenotypes? This question is fundamental to evolutionary biology and addressing it requires a well-assembled genome, the generation of which is a cost, labor, and time intensive task.