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Development and Evaluation of Rrna Targeted in Situ Probes and Phylogenetic Relationships of Freshwater Fungi
Development and evaluation of rRNA targeted in situ probes and phylogenetic relationships of freshwater fungi vorgelegt von Diplom-Biologin Christiane Baschien aus Berlin Von der Fakultät III - Prozesswissenschaften der Technischen Universität Berlin zur Erlangung des akademischen Grades Doktorin der Naturwissenschaften - Dr. rer. nat. - genehmigte Dissertation Promotionsausschuss: Vorsitzender: Prof. Dr. sc. techn. Lutz-Günter Fleischer Berichter: Prof. Dr. rer. nat. Ulrich Szewzyk Berichter: Prof. Dr. rer. nat. Felix Bärlocher Berichter: Dr. habil. Werner Manz Tag der wissenschaftlichen Aussprache: 19.05.2003 Berlin 2003 D83 Table of contents INTRODUCTION ..................................................................................................................................... 1 MATERIAL AND METHODS .................................................................................................................. 8 1. Used organisms ............................................................................................................................. 8 2. Media, culture conditions, maintenance of cultures and harvest procedure.................................. 9 2.1. Culture media........................................................................................................................... 9 2.2. Culture conditions .................................................................................................................. 10 2.3. Maintenance of cultures.........................................................................................................10 -
Fungi from Submerged Plant Debris in Aquatic Habitats in Iraq
Vol. 6(6), pp. 468-487, June 2014 DOI: 10.5897/IJBC2013.0657 Article Number: 743231B45314 International Journal of Biodiversity ISSN 2141-243X Copyright © 2014 and Conservation Author(s) retain the copyright of this article http://www.academicjournals.org/IJBC Full Length Research Paper Fungi from submerged plant debris in aquatic habitats in Iraq Abdullah H. Al-Saadoon and Mustafa N. Al-Dossary* Department of Biology, College of Science, University of Basrah, Iraq. Received 22 November, 2013; Accepted 9 May, 2014 An annotated checklist and table of the substrate type for the past and updated fungal species recorded from various submerged plant debris in aquatic habitats of Iraq are provided. Sixty seven (67) species of freshwater and marine fungi occurring in different types of plant debris collected from various locations of Iraq were registered. These include: 46 species of ascomycota, 19 species of hyphomycetes and two species of coelomycetes. Of these, 11 species were reported for the first time in Iraq. Brief descriptions of the new records are presented. Key words: Fungi, aquatic habitat, Iraq. INTRODUCTION The role of fungi associated with plant debris in aquatic been confined to the work of Abdullah (1983). There are habitats is immense and they are responsible for most of a few isolated records by Abdullah and Abdulkadir the decomposition of organic materials, thus contributing (1987), Abdulkadir and Muhsin (1991), Abdullah and Al- in nutrient regeneration cycles (Rani and Panneerselvam, Saadoon (1994a, b, 1995), Muhsin and Abdulkadir 2009; Wong et al., 1998). Noteworthy, fungal taxa have (1995), Guarro et al. (1996, 1997a, b), Al-Saadoon and been isolated from submerged woody substrata in Abdullah (2001), Muhsin and Khalaf (2002) and Al- freshwater habitats (Shearer, 1993; Goh and Hyde, 1996; Saadoon and Al-Dossary (2010). -
A Higher-Level Phylogenetic Classification of the Fungi
mycological research 111 (2007) 509–547 available at www.sciencedirect.com journal homepage: www.elsevier.com/locate/mycres A higher-level phylogenetic classification of the Fungi David S. HIBBETTa,*, Manfred BINDERa, Joseph F. BISCHOFFb, Meredith BLACKWELLc, Paul F. CANNONd, Ove E. ERIKSSONe, Sabine HUHNDORFf, Timothy JAMESg, Paul M. KIRKd, Robert LU¨ CKINGf, H. THORSTEN LUMBSCHf, Franc¸ois LUTZONIg, P. Brandon MATHENYa, David J. MCLAUGHLINh, Martha J. POWELLi, Scott REDHEAD j, Conrad L. SCHOCHk, Joseph W. SPATAFORAk, Joost A. STALPERSl, Rytas VILGALYSg, M. Catherine AIMEm, Andre´ APTROOTn, Robert BAUERo, Dominik BEGEROWp, Gerald L. BENNYq, Lisa A. CASTLEBURYm, Pedro W. CROUSl, Yu-Cheng DAIr, Walter GAMSl, David M. GEISERs, Gareth W. GRIFFITHt,Ce´cile GUEIDANg, David L. HAWKSWORTHu, Geir HESTMARKv, Kentaro HOSAKAw, Richard A. HUMBERx, Kevin D. HYDEy, Joseph E. IRONSIDEt, Urmas KO˜ LJALGz, Cletus P. KURTZMANaa, Karl-Henrik LARSSONab, Robert LICHTWARDTac, Joyce LONGCOREad, Jolanta MIA˛ DLIKOWSKAg, Andrew MILLERae, Jean-Marc MONCALVOaf, Sharon MOZLEY-STANDRIDGEag, Franz OBERWINKLERo, Erast PARMASTOah, Vale´rie REEBg, Jack D. ROGERSai, Claude ROUXaj, Leif RYVARDENak, Jose´ Paulo SAMPAIOal, Arthur SCHU¨ ßLERam, Junta SUGIYAMAan, R. Greg THORNao, Leif TIBELLap, Wendy A. UNTEREINERaq, Christopher WALKERar, Zheng WANGa, Alex WEIRas, Michael WEISSo, Merlin M. WHITEat, Katarina WINKAe, Yi-Jian YAOau, Ning ZHANGav aBiology Department, Clark University, Worcester, MA 01610, USA bNational Library of Medicine, National Center for Biotechnology Information, -
Discovery of the Teleomorph of the Hyphomycete, Sterigmatobotrys Macrocarpa, and Epitypification of the Genus to Holomorphic Status
available online at www.studiesinmycology.org StudieS in Mycology 68: 193–202. 2011. doi:10.3114/sim.2011.68.08 Discovery of the teleomorph of the hyphomycete, Sterigmatobotrys macrocarpa, and epitypification of the genus to holomorphic status M. Réblová1* and K.A. Seifert2 1Department of Taxonomy, Institute of Botany of the Academy of Sciences, CZ – 252 43, Průhonice, Czech Republic; 2Biodiversity (Mycology and Botany), Agriculture and Agri- Food Canada, Ottawa, Ontario, K1A 0C6, Canada *Correspondence: Martina Réblová, [email protected] Abstract: Sterigmatobotrys macrocarpa is a conspicuous, lignicolous, dematiaceous hyphomycete with macronematous, penicillate conidiophores with branches or metulae arising from the apex of the stipe, terminating with cylindrical, elongated conidiogenous cells producing conidia in a holoblastic manner. The discovery of its teleomorph is documented here based on perithecial ascomata associated with fertile conidiophores of S. macrocarpa on a specimen collected in the Czech Republic; an identical anamorph developed from ascospores isolated in axenic culture. The teleomorph is morphologically similar to species of the genera Carpoligna and Chaetosphaeria, especially in its nonstromatic perithecia, hyaline, cylindrical to fusiform ascospores, unitunicate asci with a distinct apical annulus, and tapering paraphyses. Identical perithecia were later observed on a herbarium specimen of S. macrocarpa originating in New Zealand. Sterigmatobotrys includes two species, S. macrocarpa, a taxonomic synonym of the type species, S. elata, and S. uniseptata. Because no teleomorph was described in the protologue of Sterigmatobotrys, we apply Article 59.7 of the International Code of Botanical Nomenclature. We epitypify (teleotypify) both Sterigmatobotrys elata and S. macrocarpa to give the genus holomorphic status, and the name S. -
Diluviocola Capensis Gen. and Sp. Nov., a Freshwater Ascomycete with Unique Polar Caps on the Ascospores
Diluviocola capensis gen. and sp. nov., a freshwater ascomycete with unique polar caps on the ascospores • 1* • 1 2 Kevm D. Hyde, Sze-Wmg Wong and E.B. Gareth Jones IFungal Diversity Research Project, Department of Ecology and Biodiversity, The University of Hong Kong, Pokfulam Road, Hong Kong; * email: [email protected] 2Department of Biology and Chemistry, City University of Hong Kong, Tat Chee Avenue, Kowloon, Hong Kong Hyde, K.D., Wong, S.W. and Jones, E.B.G. (1998). Diluviocola capensis gen. et sp. nov., a freshwater ascomycete with unique polar caps on the ascospores. Fungal Diversity 1: 133-146. Diluviocola capensis gen. and sp. novois described from wood submerged in a river in Brunei. The fungus is similar to species in Annulatascus, but it has unique ascospore appendages. In D. capensis ascospores have polar conical caps. After release from the ascus these polar caps detach from the tip, and a thread-like appendage unfurls from within the cap. EM micrographs indicate that the appendage comprises a network of inter-linked rod-like fibrils. This appendage structure is compared with the appendage structure in Annulatascus bipolaris and Halosarpheia species. Diluviocol(l is also compared to Annulatascus, Rivulicola and Proboscispora, genera which share some similar characteristics at the light and electron microscope levels. Introduction Ascospores with unfurling polar thread-like appendages are common amongst tropical freshwater ascomycetes e.g. Aniptodera lignatilis KD. Hyde (Hyde, 1992a), Annulatascus bipolaris KD. Hyde (Hyde, 1992b), Halosarpheia aquadulcis S.Y. Hsieh, H.S. Chang and E.RG. Jones (Hsieh et al., 1995), H. heteroguttulata S.W. -
Composition and Diversity of Fungal Decomposers of Submerged Wood in Two Lakes in the Brazilian Amazon State of Para´
Hindawi International Journal of Microbiology Volume 2020, Article ID 6582514, 9 pages https://doi.org/10.1155/2020/6582514 Research Article Composition and Diversity of Fungal Decomposers of Submerged Wood in Two Lakes in the Brazilian Amazon State of Para´ Eveleise SamiraMartins Canto ,1,2 Ana Clau´ dia AlvesCortez,3 JosianeSantana Monteiro,4 Flavia Rodrigues Barbosa,5 Steven Zelski ,6 and João Vicente Braga de Souza3 1Programa de Po´s-Graduação da Rede de Biodiversidade e Biotecnologia da Amazoˆnia Legal-Bionorte, Manaus, Amazonas, Brazil 2Universidade Federal do Oeste do Para´, UFOPA, Santare´m, Para´, Brazil 3Instituto Nacional de Pesquisas da Amazoˆnia, INPA, Laborato´rio de Micologia, Manaus, Amazonas, Brazil 4Museu Paraense Emilio Goeldi-MPEG, Bele´m, Para´, Brazil 5Universidade Federal de Mato Grosso, UFMT, Sinop, Mato Grosso, Brazil 6Miami University, Department of Biological Sciences, Middletown, OH, USA Correspondence should be addressed to Eveleise Samira Martins Canto; [email protected] and Steven Zelski; [email protected] Received 25 August 2019; Revised 20 February 2020; Accepted 4 March 2020; Published 9 April 2020 Academic Editor: Giuseppe Comi Copyright © 2020 Eveleise Samira Martins Canto et al. *is is an open access article distributed under the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. Aquatic ecosystems in tropical forests have a high diversity of microorganisms, including fungi, which -
Morakotiella Salina
Mycologia, 97(4), 2005, pp. 804±811. q 2005 by The Mycological Society of America, Lawrence, KS 66044-8897 A phylogenetic study of the genus Haligena (Halosphaeriales, Ascomycota) Jariya Sakayaroj1 INTRODUCTION Department of Microbiology, Faculty of Science, Prince Haligena Kohlm. was described by Kohlmeyer (1961), of Songkla University, Hat Yai, Songkhla, 90112, Thailand with the type species H. elaterophora Kohlm. The National Center for Genetic Engineering and unique characteristic of the species was the long bi- Biotechnology, 113 Thailand Science Park, polar strap-like appendages and multiseptate asco- Paholyothin Road, Khlong 1, Khlong Luang, Pathum spores that characterize and clearly distinguish the Thani, 12120, Thailand genus from other members of the Halosphaeriaceae Ka-Lai Pang (Kohlmeyer 1961). A number of species later were Department of Biology and Chemistry, City University assigned to the genus: H. amicta (Kohlm.) Kohlm. & of Hong Kong, 83 Tat Chee Avenue, Kowloon Tong, E. Kohlm., H. spartinae E.B.G. Jones, H. unicaudata Hong Kong SAR School of Biological Sciences, University of Portsmouth, E.B.G. Jones & Le Camp.-Als. and H. viscidula King Henry Building, King Henry I Street, Kohlm. & E. Kohlm. ( Jones 1962, Kohlmeyer and Portsmouth, PO1 2DY, UK Kohlmeyer 1965, Jones and Le Campion-Alsumard Souwalak Phongpaichit 1970). Shearer and Crane (1980) transferred H. spar- tinae, H. unicaudata and H. viscidula to Halosarpheia Department of Microbiology, Faculty of Science, Prince of Songkla University, Hat Yai, Songkhla, 90112, because of their hamate polar appendages that un- Thailand coil to form long thread-like structures. Recent phy- logenetic studies showed that they are not related to E.B. -
臺灣紅樹林海洋真菌誌 林 海 Marine Mangrove Fungi 洋 真 of Taiwan 菌 誌 Marine Mangrove Fungimarine of Taiwan
臺 灣 紅 樹 臺灣紅樹林海洋真菌誌 林 海 Marine Mangrove Fungi 洋 真 of Taiwan 菌 誌 Marine Mangrove Fungi of Taiwan of Marine Fungi Mangrove Ka-Lai PANG, Ka-Lai PANG, Ka-Lai PANG Jen-Sheng JHENG E.B. Gareth JONES Jen-Sheng JHENG, E.B. Gareth JONES JHENG, Jen-Sheng 國 立 臺 灣 海 洋 大 G P N : 1010000169 學 售 價 : 900 元 臺灣紅樹林海洋真菌誌 Marine Mangrove Fungi of Taiwan Ka-Lai PANG Institute of Marine Biology, National Taiwan Ocean University, 2 Pei-Ning Road, Chilung 20224, Taiwan (R.O.C.) Jen-Sheng JHENG Institute of Marine Biology, National Taiwan Ocean University, 2 Pei-Ning Road, Chilung 20224, Taiwan (R.O.C.) E. B. Gareth JONES Bioresources Technology Unit, National Center for Genetic Engineering and Biotechnology (BIOTEC), 113 Thailand Science Park, Phaholyothin Road, Khlong 1, Khlong Luang, Pathumthani 12120, Thailand 國立臺灣海洋大學 National Taiwan Ocean University Chilung January 2011 [Funded by National Science Council, Taiwan (R.O.C.)-NSC 98-2321-B-019-004] Acknowledgements The completion of this book undoubtedly required help from various individuals/parties, without whom, it would not be possible. First of all, we would like to thank the generous financial support from the National Science Council, Taiwan (R.O.C.) and the center of Excellence for Marine Bioenvironment and Biotechnology, National Taiwan Ocean University. Prof. Shean- Shong Tzean (National Taiwan University) and Dr. Sung-Yuan Hsieh (Food Industry Research and Development Institute) are thanked for the advice given at the beginning of this project. Ka-Lai Pang would particularly like to thank Prof. -
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Cryptogamie, Mycologie, 2016, 37 (4): 449-475 © 2016 Adac. Tous droits réservés Fuscosporellales, anew order of aquatic and terrestrial hypocreomycetidae (Sordariomycetes) Jing YANG a, Sajeewa S. N. MAHARACHCHIKUMBURA b,D.Jayarama BHAT c,d, Kevin D. HYDE a,g*,Eric H. C. MCKENZIE e,E.B.Gareth JONES f, Abdullah M. AL-SADI b &Saisamorn LUMYONG g* a Center of Excellence in Fungal Research, Mae Fah Luang University, Chiang Rai 57100, Thailand b Department of Crop Sciences, College of Agricultural and Marine Sciences, Sultan Qaboos University,P.O.Box 34, Al-Khod 123, Oman c Formerly,Department of Botany,Goa University,Goa, India d No. 128/1-J, Azad Housing Society,Curca, P.O. Goa Velha 403108, India e Manaaki Whenua LandcareResearch, Private Bag 92170, Auckland, New Zealand f Department of Botany and Microbiology,College of Science, King Saud University,P.O.Box 2455, Riyadh 11451, Kingdom of Saudi Arabia g Department of Biology,Faculty of Science, Chiang Mai University, Chiang Mai 50200, Thailand Abstract – Five new dematiaceous hyphomycetes isolated from decaying wood submerged in freshwater in northern Thailand are described. Phylogenetic analyses of combined LSU, SSU and RPB2 sequence data place these hitherto unidentified taxa close to Ascotaiwania and Bactrodesmiastrum. Arobust clade containing anew combination Pseudoascotaiwania persoonii, Bactrodesmiastrum species, Plagiascoma frondosum and three new species, are introduced in the new order Fuscosporellales (Hypocreomycetidae, Sordariomycetes). A sister relationship for Fuscosporellales with Conioscyphales, Pleurotheciales and Savoryellales is strongly supported by sequence data. Taxonomic novelties introduced in Fuscosporellales are four monotypic genera, viz. Fuscosporella, Mucispora, Parafuscosporella and Pseudoascotaiwania.Anew taxon in its asexual morph is proposed in Ascotaiwania based on molecular data and cultural characters. -
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Mechanisms of Invasion and the Microbiome of Introduced Species A Dissertation SUBMITTED TO THE FACULTY OF UNIVERSITY OF MINNESOTA BY Aaron S. David IN PARTIAL FULFILLMENT OF THE REQUIREMENTS FOR THE DEGREE OF DOCTOR OF PHILOSOPHY Eric Seabloom Georgiana May May 2016 © Aaron S. David 2016 Acknowledgements I have been fortunate to have had incredible guidance, mentorship, and assistance throughout my time as a Ph.D. student at the University of Minnesota. I would like to start by acknowledging and thanking my advisors, Dr. Eric Seabloom and Dr. Georgiana May for providing crucial support, and always engaging me in stimulating discussion. I also thank my committee members, Dr. Peter Kennedy, Dr. Linda Kinkel, and Dr. David Tilman for their guidance and expertise. I am indebted to Dr. Sally Hacker and Dr. Joey Spatafora of Oregon State University for generously welcoming me into their laboratories while I conducted my field work. Dr. Phoebe Zarnetske and Shawn Gerrity showed me the ropes out on the dunes and provided valuable insight along the way. I also have to thank the many undergraduate students who helped me in the field in laboratory. In particular, I need to thank Derek Schmidt, who traveled to Oregon with me and helped make my field work successful. I also thank my other collaborators that made this work possible, especially Dr. Peter Ruggiero and Reuben Biel who contributed to the data collection and analysis in Chapter 1, and Dr. Gina Quiram and Jennie Sirota who contributed to the study design and data collection in Chapter 4. I would also like to thank the amazing faculty, staff, and students of Ecology, Evolution, and Behavior and neighboring departments. -
Potential of Marine-Derived Fungi and Their Enzymes in Bioremediation of Industrial Pollutants
Potential of marine-derived fungi and their enzymes in bioremediation of industrial pollutants Thesis submitted for the degree of Doctor of Philosophy in Marine Sciences to the Goa University by Ashutosh Kumar Verma Work carried out at National Institute of Oceanography, Dona Paula, Goa-403004, India March 2011 Potential of marine-derived fungi and their enzymes in bioremediation of industrial pollutants Thesis submitted for the degree of Doctor of Philosophy in Marine Sciences to the Goa University by Ashutosh Kumar Verma National Institute of Oceanography, Dona Paula, Goa-403004, India March 2011 STATEMENT As per requirement, under the University Ordinance 0.19.8 (vi), I state that the present thesis titled “Potential of marine-derived fungi and their enzymes in bioremediation of industrial pollutants” is my original contribution and the same has not been submitted on any previous occasion. To the best of my knowledge, the present study is the first comprehensive work of its kind from the area mentioned. The literature related to the problem investigated has been cited. Due acknowledgements have been made whenever facilities or suggestions have been availed of. Ashutosh Kumar Verma CERTIFICATE This is to certify that the thesis titled “Potential of marine-derived fungi and their enzymes in bioremediation of industrial pollutants” submitted for the award of the degree of Doctor of Philosophy in the Department of Marine Sciences, Goa University, is the bona fide work of Mr Ashutosh Kumar Verma. The work has been carried out under my supervision and the thesis or any part thereof has not been previously submitted for any degree or diploma in any university or institution. -
Multigene Phylogeny and Secondary ITS Structure
Persoonia 35, 2015: 21–38 www.ingentaconnect.com/content/nhn/pimj RESEARCH ARTICLE http://dx.doi.org/10.3767/003158515X687434 Molecular systematics of Barbatosphaeria (Sordariomycetes): multigene phylogeny and secondary ITS structure M. Réblová1, K. Réblová2, V. Štěpánek3 Key words Abstract Thirteen morphologically similar strains of barbatosphaeria- and tectonidula-like fungi were studied based on the comparison of cultural and morphological features of sexual and asexual morphs and phylogenetic analyses phylogenetics of five nuclear loci, i.e. internal transcribed spacer rDNA operon (ITS), large and small subunit nuclear ribosomal Ramichloridium DNA, β-tubulin, and second largest subunit of RNA polymerase II. Phylogenetic results were supported by in-depth sequence analysis comparative analyses of common core secondary structure of ITS1 and ITS2 in all strains and the identification spacer regions of non-conserved, co-evolving nucleotides that maintain base pairing in the RNA transcript. Barbatosphaeria is Sporothrix defined as a well-supported monophyletic clade comprising several lineages and is placed in the Sordariomycetes Tectonidula incertae sedis. The genus is expanded to encompass nine species with both septate and non-septate ascospores in clavate, stipitate asci with a non-amyloid apical annulus and non-stromatic ascomata with a long decumbent neck and carbonised wall often covered by pubescence. The asexual morphs are dematiaceous hyphomycetes with holoblastic conidiogenesis belonging to Ramichloridium and Sporothrix types. The morphologically similar Tectonidula, represented by the type species T. hippocrepida, grouped with members of Barbatosphaeria and is transferred to that genus. Four new species are introduced and three new combinations in Barbatosphaeria are proposed. A dichotomous key to species accepted in the genus is provided.