'Old' Ideas on Motor Dysfunction in Dystonia
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A Computational Approach for Defining a Signature of Β-Cell Golgi Stress in Diabetes Mellitus
Page 1 of 781 Diabetes A Computational Approach for Defining a Signature of β-Cell Golgi Stress in Diabetes Mellitus Robert N. Bone1,6,7, Olufunmilola Oyebamiji2, Sayali Talware2, Sharmila Selvaraj2, Preethi Krishnan3,6, Farooq Syed1,6,7, Huanmei Wu2, Carmella Evans-Molina 1,3,4,5,6,7,8* Departments of 1Pediatrics, 3Medicine, 4Anatomy, Cell Biology & Physiology, 5Biochemistry & Molecular Biology, the 6Center for Diabetes & Metabolic Diseases, and the 7Herman B. Wells Center for Pediatric Research, Indiana University School of Medicine, Indianapolis, IN 46202; 2Department of BioHealth Informatics, Indiana University-Purdue University Indianapolis, Indianapolis, IN, 46202; 8Roudebush VA Medical Center, Indianapolis, IN 46202. *Corresponding Author(s): Carmella Evans-Molina, MD, PhD ([email protected]) Indiana University School of Medicine, 635 Barnhill Drive, MS 2031A, Indianapolis, IN 46202, Telephone: (317) 274-4145, Fax (317) 274-4107 Running Title: Golgi Stress Response in Diabetes Word Count: 4358 Number of Figures: 6 Keywords: Golgi apparatus stress, Islets, β cell, Type 1 diabetes, Type 2 diabetes 1 Diabetes Publish Ahead of Print, published online August 20, 2020 Diabetes Page 2 of 781 ABSTRACT The Golgi apparatus (GA) is an important site of insulin processing and granule maturation, but whether GA organelle dysfunction and GA stress are present in the diabetic β-cell has not been tested. We utilized an informatics-based approach to develop a transcriptional signature of β-cell GA stress using existing RNA sequencing and microarray datasets generated using human islets from donors with diabetes and islets where type 1(T1D) and type 2 diabetes (T2D) had been modeled ex vivo. To narrow our results to GA-specific genes, we applied a filter set of 1,030 genes accepted as GA associated. -
Predicting Coupling Probabilities of G-Protein Coupled Receptors Gurdeep Singh1,2,†, Asuka Inoue3,*,†, J
Published online 30 May 2019 Nucleic Acids Research, 2019, Vol. 47, Web Server issue W395–W401 doi: 10.1093/nar/gkz392 PRECOG: PREdicting COupling probabilities of G-protein coupled receptors Gurdeep Singh1,2,†, Asuka Inoue3,*,†, J. Silvio Gutkind4, Robert B. Russell1,2,* and Francesco Raimondi1,2,* 1CellNetworks, Bioquant, Heidelberg University, Im Neuenheimer Feld 267, 69120 Heidelberg, Germany, 2Biochemie Zentrum Heidelberg (BZH), Heidelberg University, Im Neuenheimer Feld 328, 69120 Heidelberg, Germany, 3Graduate School of Pharmaceutical Sciences, Tohoku University, Sendai, Miyagi 980-8578, Japan and 4Department of Pharmacology and Moores Cancer Center, University of California, San Diego, La Jolla, CA 92093, USA Received February 10, 2019; Revised April 13, 2019; Editorial Decision April 24, 2019; Accepted May 01, 2019 ABSTRACT great use in tinkering with signalling pathways in living sys- tems (5). G-protein coupled receptors (GPCRs) control multi- Ligand binding to GPCRs induces conformational ple physiological states by transducing a multitude changes that lead to binding and activation of G-proteins of extracellular stimuli into the cell via coupling to situated on the inner cell membrane. Most of mammalian intra-cellular heterotrimeric G-proteins. Deciphering GPCRs couple with more than one G-protein giving each which G-proteins couple to each of the hundreds receptor a distinct coupling profile (6) and thus specific of GPCRs present in a typical eukaryotic organism downstream cellular responses. Determining these coupling is therefore critical to understand signalling. Here, profiles is critical to understand GPCR biology and phar- we present PRECOG (precog.russelllab.org): a web- macology. Despite decades of research and hundreds of ob- server for predicting GPCR coupling, which allows served interactions, coupling information is still missing for users to: (i) predict coupling probabilities for GPCRs many receptors and sequence determinants of coupling- specificity are still largely unknown. -
Analysis of the Indacaterol-Regulated Transcriptome in Human Airway
Supplemental material to this article can be found at: http://jpet.aspetjournals.org/content/suppl/2018/04/13/jpet.118.249292.DC1 1521-0103/366/1/220–236$35.00 https://doi.org/10.1124/jpet.118.249292 THE JOURNAL OF PHARMACOLOGY AND EXPERIMENTAL THERAPEUTICS J Pharmacol Exp Ther 366:220–236, July 2018 Copyright ª 2018 by The American Society for Pharmacology and Experimental Therapeutics Analysis of the Indacaterol-Regulated Transcriptome in Human Airway Epithelial Cells Implicates Gene Expression Changes in the s Adverse and Therapeutic Effects of b2-Adrenoceptor Agonists Dong Yan, Omar Hamed, Taruna Joshi,1 Mahmoud M. Mostafa, Kyla C. Jamieson, Radhika Joshi, Robert Newton, and Mark A. Giembycz Departments of Physiology and Pharmacology (D.Y., O.H., T.J., K.C.J., R.J., M.A.G.) and Cell Biology and Anatomy (M.M.M., R.N.), Snyder Institute for Chronic Diseases, Cumming School of Medicine, University of Calgary, Calgary, Alberta, Canada Received March 22, 2018; accepted April 11, 2018 Downloaded from ABSTRACT The contribution of gene expression changes to the adverse and activity, and positive regulation of neutrophil chemotaxis. The therapeutic effects of b2-adrenoceptor agonists in asthma was general enriched GO term extracellular space was also associ- investigated using human airway epithelial cells as a therapeu- ated with indacaterol-induced genes, and many of those, in- tically relevant target. Operational model-fitting established that cluding CRISPLD2, DMBT1, GAS1, and SOCS3, have putative jpet.aspetjournals.org the long-acting b2-adrenoceptor agonists (LABA) indacaterol, anti-inflammatory, antibacterial, and/or antiviral activity. Numer- salmeterol, formoterol, and picumeterol were full agonists on ous indacaterol-regulated genes were also induced or repressed BEAS-2B cells transfected with a cAMP-response element in BEAS-2B cells and human primary bronchial epithelial cells by reporter but differed in efficacy (indacaterol $ formoterol . -
Multi-Functionality of Proteins Involved in GPCR and G Protein Signaling: Making Sense of Structure–Function Continuum with In
Cellular and Molecular Life Sciences (2019) 76:4461–4492 https://doi.org/10.1007/s00018-019-03276-1 Cellular andMolecular Life Sciences REVIEW Multi‑functionality of proteins involved in GPCR and G protein signaling: making sense of structure–function continuum with intrinsic disorder‑based proteoforms Alexander V. Fonin1 · April L. Darling2 · Irina M. Kuznetsova1 · Konstantin K. Turoverov1,3 · Vladimir N. Uversky2,4 Received: 5 August 2019 / Revised: 5 August 2019 / Accepted: 12 August 2019 / Published online: 19 August 2019 © Springer Nature Switzerland AG 2019 Abstract GPCR–G protein signaling system recognizes a multitude of extracellular ligands and triggers a variety of intracellular signal- ing cascades in response. In humans, this system includes more than 800 various GPCRs and a large set of heterotrimeric G proteins. Complexity of this system goes far beyond a multitude of pair-wise ligand–GPCR and GPCR–G protein interactions. In fact, one GPCR can recognize more than one extracellular signal and interact with more than one G protein. Furthermore, one ligand can activate more than one GPCR, and multiple GPCRs can couple to the same G protein. This defnes an intricate multifunctionality of this important signaling system. Here, we show that the multifunctionality of GPCR–G protein system represents an illustrative example of the protein structure–function continuum, where structures of the involved proteins represent a complex mosaic of diferently folded regions (foldons, non-foldons, unfoldons, semi-foldons, and inducible foldons). The functionality of resulting highly dynamic conformational ensembles is fne-tuned by various post-translational modifcations and alternative splicing, and such ensembles can undergo dramatic changes at interaction with their specifc partners. -
Modulation of Queuine Uptake and Incorporation Into Trna by Protein Kinase C and Protein Phosphatase Rana C
Old Dominion University ODU Digital Commons Chemistry & Biochemistry Faculty Publications Chemistry & Biochemistry 1996 Modulation of Queuine Uptake and Incorporation into tRNA by Protein Kinase C and Protein Phosphatase Rana C. Morris Old Dominion University Bonnie J. Brooks Old Dominion University K. Lenore Hart Mark S. Elliot Follow this and additional works at: https://digitalcommons.odu.edu/chemistry_fac_pubs Part of the Biochemistry Commons, Cell Biology Commons, and the Molecular Biology Commons Repository Citation Morris, Rana C.; Brooks, Bonnie J.; Hart, K. Lenore; and Elliot, Mark S., "Modulation of Queuine Uptake and Incorporation into tRNA by Protein Kinase C and Protein Phosphatase" (1996). Chemistry & Biochemistry Faculty Publications. 162. https://digitalcommons.odu.edu/chemistry_fac_pubs/162 Original Publication Citation Morris, R. C., Brooks, B. J., Hart, K. L., & Elliott, M. S. (1996). Modulation of queuine uptake and incorporation into trna by protein kinase c and protein phosphatase. Biochimica et Biophysica Acta, 1311(2), 124-132. doi:10.1016/0167-4889(95)00184-0 This Article is brought to you for free and open access by the Chemistry & Biochemistry at ODU Digital Commons. It has been accepted for inclusion in Chemistry & Biochemistry Faculty Publications by an authorized administrator of ODU Digital Commons. For more information, please contact [email protected]. et Biophysica A£ta ELSEVIER 13iochinticaet Biophy.~icaAria 131 I (1996) 12J- 132 Modulation of queuine uptake and incorporation into tRNA by protein kinase C and protein phosphatase Rana C. Morris, Bonnie J. Brooks I K. Lenore Hart 2 Mark S. Elliott + I)elmrtment ,~["Chemist O" and Biochemistry, Ohl Dominion Unil'ersity. Norfolk. VA 23529, USA Received I September 1995: revised 31 October 1995; accepted 15 November 1995 Abstract It has been suggested that the rate of queuine uptake ;nto cultured human fibroblasts is controlled by phosphorylation levels within the cell. -
Epigenetic Modifications to Cytosine and Alzheimer's Disease
University of Kentucky UKnowledge Theses and Dissertations--Chemistry Chemistry 2017 EPIGENETIC MODIFICATIONS TO CYTOSINE AND ALZHEIMER’S DISEASE: A QUANTITATIVE ANALYSIS OF POST-MORTEM TISSUE Elizabeth M. Ellison University of Kentucky, [email protected] Digital Object Identifier: https://doi.org/10.13023/ETD.2017.398 Right click to open a feedback form in a new tab to let us know how this document benefits ou.y Recommended Citation Ellison, Elizabeth M., "EPIGENETIC MODIFICATIONS TO CYTOSINE AND ALZHEIMER’S DISEASE: A QUANTITATIVE ANALYSIS OF POST-MORTEM TISSUE" (2017). Theses and Dissertations--Chemistry. 86. https://uknowledge.uky.edu/chemistry_etds/86 This Doctoral Dissertation is brought to you for free and open access by the Chemistry at UKnowledge. It has been accepted for inclusion in Theses and Dissertations--Chemistry by an authorized administrator of UKnowledge. For more information, please contact [email protected]. STUDENT AGREEMENT: I represent that my thesis or dissertation and abstract are my original work. Proper attribution has been given to all outside sources. I understand that I am solely responsible for obtaining any needed copyright permissions. I have obtained needed written permission statement(s) from the owner(s) of each third-party copyrighted matter to be included in my work, allowing electronic distribution (if such use is not permitted by the fair use doctrine) which will be submitted to UKnowledge as Additional File. I hereby grant to The University of Kentucky and its agents the irrevocable, non-exclusive, and royalty-free license to archive and make accessible my work in whole or in part in all forms of media, now or hereafter known. -
Mutations in GNAL: a Novel Cause of Craniocervical Dystonia
Research Case Report/Case Series Mutations in GNAL A Novel Cause of Craniocervical Dystonia Kishore R. Kumar, MBBS, FRACP; Katja Lohmann, PhD; Ikuo Masuho, PhD; Ryosuke Miyamoto, MD; Andreas Ferbert, MD; Thora Lohnau, BS; Meike Kasten, MD; Johann Hagenah, MD; Norbert Brüggemann, MD; Julia Graf, MD; Alexander Münchau, MD; Vladimir S. Kostic, MD, PhD; Carolyn M. Sue, MBBS, FRACP, PhD; Aloysius R. Domingo, MD; Raymond L. Rosales, MD, PhD; Lilian V. Lee, MD; Karen Freimann, MS; Ana Westenberger, PhD; Youhei Mukai, MD; Toshitaka Kawarai, MD; Ryuji Kaji, MD; Christine Klein, MD; Kirill A. Martemyanov, PhD; Alexander Schmidt, MD Video at jamaneurology.com IMPORTANCE Mutations in the GNAL gene have recently been shown to cause primary torsion Supplemental content at dystonia. The GNAL-encoded protein (Gαolf) is important for dopamine D1 receptor function and jamaneurology.com odorant signal transduction. We sequenced all 12 exons of GNAL in 461 patients from Germany, Serbia, and Japan, including 318 patients with dystonia (190 with cervical dystonia), 51 with hyposmia and Parkinson disease, and 92 with tardive dyskinesia or acute dystonic reactions. OBSERVATIONS We identified the following two novel heterozygous putative mutations in GNAL: p.Gly213Ser in a German patient and p.Ala353Thr in a Japanese patient. These variants were predicted to be pathogenic in silico, were absent in ethnically matched control individuals, and impaired Gαolf coupling to D1 receptors in a bioluminescence energy transfer (BRET) assay. Two additional variants appeared to be benign because they behaved like wild-type samples in the BRET assay (p.Ala311Thr) or were detected in ethnically matched controls (p.Thr92Ala). -
Comparative Proteomic Analysis Identifies Epha2 As a Specific Cell
International Journal of Molecular Sciences Article Comparative Proteomic Analysis Identifies EphA2 as a Specific Cell Surface Marker for Wharton’s Jelly-Derived Mesenchymal Stem Cells Ashraf Al Madhoun 1,2,* , Sulaiman K. Marafie 3 , Dania Haddad 2, Motasem Melhem 2, Mohamed Abu-Farha 3 , Hamad Ali 2,4 , Sardar Sindhu 1 , Maher Atari 5 and Fahd Al-Mulla 2 1 Department of Animal and Imaging Core Facilities, Dasman Diabetes Institute, Dasman 15462, Kuwait; [email protected] 2 Department of Genetics and Bioinformatics, Dasman Diabetes Institute, Dasman 15462, Kuwait; [email protected] (D.H.); [email protected] (M.M.); [email protected] (H.A.); [email protected] (F.A.-M.) 3 Department of Biochemistry and Molecular Biology, Dasman Diabetes Institute, Dasman 15462, Kuwait; sulaiman.marafi[email protected] (S.K.M.); [email protected] (M.A.-F.) 4 Department of Medical Laboratory Sciences, Faculty of Allied Health Sciences, Health Sciences Center (HSC), Kuwait University, Jabriya 046302, Kuwait 5 Medical-Surgical Pathology Department, Regenerative Medicine Research Institute, Universitat Internacional de Catalunya, 08195 Barcelona, Spain; [email protected] * Correspondence: [email protected] Received: 28 June 2020; Accepted: 1 September 2020; Published: 3 September 2020 Abstract: Wharton’s jelly-derived mesenchymal stem cells (WJ-MSCs) are a valuable tool in stem cell research due to their high proliferation rate, multi-lineage differentiation potential, and immunotolerance properties. However, fibroblast impurity during WJ-MSCs isolation is unavoidable because of morphological similarities and shared surface markers. Here, a proteomic approach was employed to identify specific proteins differentially expressed by WJ-MSCs in comparison to those by neonatal foreskin and adult skin fibroblasts (NFFs and ASFs, respectively). -
The Curious Case of Gαs Gain-Of-Function in Neoplasia Giulio Innamorati1* , Thomas M
Innamorati et al. BMC Cancer (2018) 18:293 https://doi.org/10.1186/s12885-018-4133-z DEBATE Open Access The curious case of Gαs gain-of-function in neoplasia Giulio Innamorati1* , Thomas M. Wilkie2*, Havish S. Kantheti2, Maria Teresa Valenti3, Luca Dalle Carbonare3, Luca Giacomello1, Marco Parenti4, Davide Melisi5 and Claudio Bassi1 Abstract Background: Mutations activating the α subunit of heterotrimeric Gs protein are associated with a number of highly specific pathological molecular phenotypes. One of the best characterized is the McCune Albright syndrome. The disease presents with an increased incidence of neoplasias in specific tissues. Main body: A similar repertoire of neoplasms can develop whether mutations occur spontaneously in somatic tissues during fetal development or after birth. Glands are the most “permissive” tissues, recently found to include the entire gastrointestinal tract. High frequency of activating Gαs mutations is associated with precise diagnoses (e.g., IPMN, Pyloric gland adenoma, pituitary toxic adenoma). Typically, most neoplastic lesions, from thyroid to pancreas, remain well differentiated but may be a precursor to aggressive cancer. Conclusions: Here we propose the possibility that gain-of-function mutations of Gαs interfere with signals in the microenvironment of permissive tissues and lead to a transversal neoplastic phenotype. Keywords: GNAS, Heterotrimeric Gs protein, Activating mutation, Neoplasm, McCune Albright Syndrome, Intraductal papillary mucinous neoplasm, Fibrous dysplasia Background number of neoplasias, two hotspots on Gαs, Arg (R)201 Heterotrimeric Gαβγ proteins are central to sensing a and Gln (Q)227, are found mutated to three (Cys/His/ great number of extracellular stimuli. Each of the sub- Ser) or two (Arg/Leu) amino acids, respectively (Fig. -
Thermal Manipulation During Embryogenesis Impacts H3k4me3 and H3k27me3 Histone Marks in Chicken Hypothalamus
ORIGINAL RESEARCH published: 26 November 2019 doi: 10.3389/fgene.2019.01207 Thermal Manipulation During Embryogenesis Impacts H3K4me3 and H3K27me3 Histone Marks in Chicken Hypothalamus Sarah-Anne David 1†, Anaïs Vitorino Carvalho 1†, Coralie Gimonnet 1, Aurélien Brionne 1, Christelle Hennequet-Antier 1, Benoît Piégu 2, Sabine Crochet 1, Nathalie Couroussé 1, Thierry Bordeau 1, Yves Bigot 2, Anne Collin 1 and Vincent Coustham 1* 1 BOA, INRA, Université de Tours, Nouzilly, France, 2 PRC, CNRS, IFCE, INRA, Université de Tours, Nouzilly, France Changes in gene activity through epigenetic alterations induced by early environmental Edited by: challenges during embryogenesis are known to impact the phenotype, health, and disease Helene Kiefer, risk of animals. Learning how environmental cues translate into persisting epigenetic INRA Centre Jouy-en-Josas, France memory may open new doors to improve robustness and resilience of developing animals. Reviewed by: Christoph Grunau, It has previously been shown that the heat tolerance of male broiler chickens was improved Université de Perpignan Via Domitia, by cyclically elevating egg incubation temperature. The embryonic thermal manipulation France enhanced gene expression response in muscle (P. major) when animals were heat Naoko Hattori, National Cancer Center Research challenged at slaughter age, 35 days post-hatch. However, the molecular mechanisms Institute, Japan underlying this phenomenon remain unknown. Here, we investigated the genome-wide *Correspondence: distribution, in hypothalamus and muscle tissues, of two histone post-translational Vincent Coustham [email protected] modifications, H3K4me3 and H3K27me3, known to contribute to environmental memory in eukaryotes. We found 785 H3K4me3 and 148 H3K27me3 differential peaks in the †These authors have contributed equally to this work hypothalamus, encompassing genes involved in neurodevelopmental, metabolic, and gene regulation functions. -
GNAL Mutation in Isolated Laryngeal Dystonia
PUTZEL ET AL cervical involvement that sometimes starts in childhood 13. Zech M, Gross N, Jochim A, et al. Rare sequence variants in ANO3 and GNAL in a primary torsion dystonia series and con- or young adulthood comparable to patients with trols. Mov Disord 2014;29:143-147. DYT27 dystonia. Up to 10% of these patients show 14. Stamelou M, Charlesworth G, Cordivari C, et al. The phenotypic spec- generalization, and brachial manifestation has not yet trum of DYT24 due to ANO3 mutations. Mov Disord 2014;29:928-934. been described in DYT25 dystonia.11-13 Finally, domi- 15. Ma LY, Wang L, Yang YM, Feng T, Wan XH. Mutations in ANO3 and GNAL gene in thirty-three isolated dystonia families. nant DYT24 dystonia (ANO3 mutation) can also cause Mov Disord 2015;30:743-744. cranio-cervical dystonia with focal and segmental distri- bution, but more often with late onset.7,13-15 Considering the age of onset as another important Supporting Data diagnostic criterion, the DYT27 dystonia extends the Additional Supporting Information may be found spectrum of early-onset dystonia, which so far mainly in the online version of this article at the publisher’s consisted of DYT1, DYT2, DYT6, DYT16, and in web-site. some cases DYT24 and DYT25. In conclusion, recessive mutations in the COL6A3 gene cause early-onset isolated dystonia with focal, seg- mental, or generalized distribution in the cranio- GNAL Mutation in Isolated cervical region, upper limbs, and trunk with interindi- Laryngeal Dystonia vidual heterogeneity. Therefore, even if the pathogenic role of COL6A3 mutations in autosomal-recessive dys- Gregory G. -
Regulation of Adenylyl Cyclase 5 in Striatal Neurons Confers the Ability to Detect Coincident Neuromodulatory Signals
bioRxiv preprint doi: https://doi.org/10.1101/597096; this version posted July 2, 2019. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY 4.0 International license. Regulation of adenylyl cyclase 5 in striatal neurons confers the ability to detect coincident neuromodulatory signals Neil J. Bruce1,* Daniele Narzi2,* Daniel Trpevski3,* Siri Camee van Keulen2,4,* Anu G. Nair5 Ursula Röthlisberger2,+ Rebecca C. Wade1,6,7,+ Paolo Carloni8,9,+ Jeanette Hellgren Kotaleski3,10,+ *: Joint first authors +: Corresponding Authors Affiliations: 1. Molecular and Cellular Modeling Group, Heidelberg Institute for Theoretical Studies (HITS), Schloss-Wolfsbrunnenweg 35, 69118 Heidelberg, Germany. 2. Institut des Sciences et Ingénierie Chimiques, École Polytechnique Fédérale de Lausanne (EPFL), CH-1015 Lausanne, Switzerland 3. Science for Life Laboratory, School of Electrical Engineering and Computer Science, KTH Royal Institute of Technology, 10044, Stockholm, Sweden. 4. Department of Computer Science, Stanford University, Stanford, California 94305, USA 5. Institute of Molecular Life Sciences, University of Zurich, Winterthurerstrasse 190, 8057 Zurich, Switzerland 6. Center for Molecular Biology (ZMBH), DKFZ-ZMBH Alliance, Heidelberg University, Im Neuenheimer Feld 282, 69120 Heidelberg, Germany 7. Interdisciplinary Center for Scientific Computing (IWR), Heidelberg University, Im Neuenheimer Feld 368, 69120 Heidelberg, Germany 8. Department of Physics and Department of Neurobiology, RWTH Aachen University, 52078 Aachen, Germany 9. Institute for Neuroscience and Medicine (INM)-11, Forschungszentrum Jülich, 52428 Jülich, Germany, Institute of 1 bioRxiv preprint doi: https://doi.org/10.1101/597096; this version posted July 2, 2019.