Allium Albanicum (Amaryllidaceae), a New Species from Balkans and Its
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AUTOMATIC FEEDBACK CONTROL in HUMAN BIOLOGY EEL 5934 Section 32513 Class Periods: MWF, Period 8, 3:00-3:50PM Location: Classroom Location Academic Term: Spring 2021
AUTOMATIC FEEDBACK CONTROL IN HUMAN BIOLOGY EEL 5934 Section 32513 Class Periods: MWF, period 8, 3:00-3:50PM Location: Classroom location Academic Term: Spring 2021 Instructor: Name: Jacob Hammer Email Address: [email protected] Office Phone Number: 3523924934 Office Hours: MWF hours available, office location Teaching Assistant/Peer Mentor/Supervised Teaching Student: Please contact through the Canvas website • Name, email address, office location, office hours • Name, email address, office location, office hours Course Description A course about the automatic feedback control principles that govern biological, biochemical, and genetic mechanisms underlying critical processes in human biology. The course concentrates on case studies, including the automatic feedback control principles that regulate vision, balance, heart rate, and various metabolic and immunologic processes in human biology. Course Pre-Requisites -Basic knowledge of control theory and linear algebra (EEL 4657C or EEL 4610 or equivalent) or instructor consent Course Objectives Introduce students to general principles of automatic control, as they are applied by natural pHenomena in human biology. Materials and Supply Fees List if applicable Required TextBooks and Software: • "Biomolecular Feedback Systems" • Domitilla Del VeccHio and RicHard M. Murray • Princeton University Press, Princeton, NJ, USA, 2014 • ISBN number (if course notes derived from various publisHed sources are used, provide information above for eacH source) (if course notes are developed by tHe instructor, -
Listing a Species As a Threatened Or Endangered Species Section 4 of the Endangered Species Act
U.S. Fish & Wildlife Service Listing a Species as a Threatened or Endangered Species Section 4 of the Endangered Species Act The Endangered Species Act of 1973, as amended, is one of the most far- reaching wildlife conservation laws ever enacted by any nation. Congress, on behalf of the American people, passed the ESA to prevent extinctions facing many species of fish, wildlife and plants. The purpose of the ESA is to conserve endangered and threatened species and the ecosystems on which they depend as key components of America’s heritage. To implement the ESA, the U.S. Fish and Wildlife Service works in cooperation with the National Marine Fisheries Service (NMFS), other Federal, State, and local USFWS Susanne Miller, agencies, Tribes, non-governmental Listed in 2008 as threatened because of the decline in sea ice habitat, the polar bear may organizations, and private citizens. spend time on land during fall months, waiting for ice to return. Before a plant or animal species can receive the protection provided by What are the criteria for deciding whether refer to these species as “candidates” the ESA, it must first be added to to add a species to the list? for listing. Through notices of review, the Federal lists of threatened and A species is added to the list when it we seek biological information that will endangered wildlife and plants. The is determined to be an endangered or help us to complete the status reviews List of Endangered and Threatened threatened species because of any of for these candidate species. We publish Wildlife (50 CFR 17.11) and the List the following factors: notices in the Federal Register, a daily of Endangered and Threatened Plants n the present or threatened Federal Government publication. -
Complete Chloroplast Genomes Shed Light on Phylogenetic
www.nature.com/scientificreports OPEN Complete chloroplast genomes shed light on phylogenetic relationships, divergence time, and biogeography of Allioideae (Amaryllidaceae) Ju Namgung1,4, Hoang Dang Khoa Do1,2,4, Changkyun Kim1, Hyeok Jae Choi3 & Joo‑Hwan Kim1* Allioideae includes economically important bulb crops such as garlic, onion, leeks, and some ornamental plants in Amaryllidaceae. Here, we reported the complete chloroplast genome (cpDNA) sequences of 17 species of Allioideae, fve of Amaryllidoideae, and one of Agapanthoideae. These cpDNA sequences represent 80 protein‑coding, 30 tRNA, and four rRNA genes, and range from 151,808 to 159,998 bp in length. Loss and pseudogenization of multiple genes (i.e., rps2, infA, and rpl22) appear to have occurred multiple times during the evolution of Alloideae. Additionally, eight mutation hotspots, including rps15-ycf1, rps16-trnQ-UUG, petG-trnW-CCA , psbA upstream, rpl32- trnL-UAG , ycf1, rpl22, matK, and ndhF, were identifed in the studied Allium species. Additionally, we present the frst phylogenomic analysis among the four tribes of Allioideae based on 74 cpDNA coding regions of 21 species of Allioideae, fve species of Amaryllidoideae, one species of Agapanthoideae, and fve species representing selected members of Asparagales. Our molecular phylogenomic results strongly support the monophyly of Allioideae, which is sister to Amaryllioideae. Within Allioideae, Tulbaghieae was sister to Gilliesieae‑Leucocoryneae whereas Allieae was sister to the clade of Tulbaghieae‑ Gilliesieae‑Leucocoryneae. Molecular dating analyses revealed the crown age of Allioideae in the Eocene (40.1 mya) followed by diferentiation of Allieae in the early Miocene (21.3 mya). The split of Gilliesieae from Leucocoryneae was estimated at 16.5 mya. -
Growing Scallions (Green Onions) for Market Gardeners
University of Nebraska - Lincoln DigitalCommons@University of Nebraska - Lincoln Historical Materials from University of Nebraska-Lincoln Extension Extension 2004 Growing Scallions (Green Onions) for Market Gardeners Laurie Hodges University of Nebraska - Lincoln, [email protected] Follow this and additional works at: https://digitalcommons.unl.edu/extensionhist Part of the Agriculture Commons, and the Curriculum and Instruction Commons Hodges, Laurie, "Growing Scallions (Green Onions) for Market Gardeners" (2004). Historical Materials from University of Nebraska-Lincoln Extension. 76. https://digitalcommons.unl.edu/extensionhist/76 This Article is brought to you for free and open access by the Extension at DigitalCommons@University of Nebraska - Lincoln. It has been accepted for inclusion in Historical Materials from University of Nebraska-Lincoln Extension by an authorized administrator of DigitalCommons@University of Nebraska - Lincoln. NF607 Growing Scallions (Green Onions) for Market Gardeners By Laurie Hodges, Extension Horticulturist Growing scallions (green onions) can provide market pricing. For a list of seed sources, see NebFact 92-80, gardeners with early cash flow and customers with quality General and Specialty Mail-Order Seed Sources, and NebFact increases in storage life, freshness and flavor. Growing 96-274, Seed Sources for Commercial Vegetable Production. quality scallions is easier than growing quality bulb onions A few suppliers are listed at the end of this publication. simply because they are in the field for a shorter time and Optimum growing conditions for scallions include well- bulb formation is not an issue when growing true scallions. drained sandy loam soil and cool conditions. The soil must The scallion is not the same as the leafy top of a be prepared to create a fine, smooth seed bed because the bulbing onion. -
Traditional Uses, Phytochemicals and Pharmacological Properties Of
Journal of Medicinal Plants Studies 2019; 7(2): 214-220 ISSN (E): 2320-3862 ISSN (P): 2394-0530 Traditional uses, phytochemicals and NAAS Rating: 3.53 JMPS 2019; 7(2): 214-220 pharmacological properties of Allium tuberosum © 2019 JMPS Received: 23-01-2019 Rottler ex spreng Accepted: 28-02-2019 Khoshnur Jannat Department of Biotechnology Khoshnur Jannat, Taufiq Rahman and Mohammed Rahmatullah and Genetic Engineering, University of Development Abstract Alternative, Lalmatia, Dhaka, Allium tuberosum is a lesser known plant of the Allium genus compared to the more known Allium cepa Bangladesh (onion) or Allium sativum (garlic). However, Allium tuberosum is now being increasingly recognized to be an important plant in its own right with diverse important pharmacological activities. This review will Taufiq Rahman attempt to describe the reported phytochemicals and pharmacological activities of the plant with the Department of Pharmacology, University of Cambridge, Tennis objective to determine the plant’s potential to be a source of lead compounds and effective new drugs. Court Road, CB2 1PD, UK, Bangladesh Keywords: Allium tuberosum, garlic chive, amaryllidaceae Mohammed Rahmatullah 1. Introduction Department of Biotechnology and Genetic Engineering, From ancient periods people have been using a diverse range of medicinal plants for curing University of Development diseases. In the last 200 years, traditional systems of plant based medicines have been largely Alternative, Lalmatia, Dhaka, replaced with allopathic system of medicine, the latter being based on the principle of one Bangladesh drug-one therapy. Allopathic medicines are largely synthetic. Now the traditional way of healing is making a comeback as a large number of synthetic drugs are costly and shows adverse side-effects. -
001 Biolife Building Room
Biology 1009 Biological Reasoning (3.0 credits) Section: 001 BioLife Building Room 332 - Fall 2017: Mon, Wed, Fri 1.00-1.50pm INSTRUCTOR: Dr. Cinzia Sevignani – Office: BL248 - Email: [email protected] Readings: There is no assigned textbook but you should have access to a college level biology text such as Campbell Biology 9th/10th Edition ISBN -10: 0321558235 or Biological Science 4th Edition by Scott Freeman ISBN-10: 0321598202. Introductory Biology 1111 and 2112 use the Campbell textbook. I will give you assigned readings either in class or posted on Blackboard. All readings and class exercises and readings should be placed in a Notebook so you can review them for the midterm exams. Some readings will be taken from scientific literature and others will be from news articles such as the New York Times or from a biology textbook. The notebook will become your textbook and you will bring it to class each day (see details below). Here is a link to a video with information about the class https://www.youtube.com/watch?v=Oulh0Bflsdk. Course Goal: The goal of the course is to increase your success in learning biology and to provide insight and inspiration by learning about some of the exciting ideas in contemporary biology. Biology is a complex subject requiring quantitative reasoning (to understand graphs, data tables, etc.) and the ability to acquire and link concepts with data. Memorization is important but not enough. Part I: General tools for success in biology. We will develop facility with the following tools: • Concept mapping to illustrate how details are linked to and support concepts and ideas. -
Generic Classification of Amaryllidaceae Tribe Hippeastreae Nicolás García,1 Alan W
TAXON 2019 García & al. • Genera of Hippeastreae SYSTEMATICS AND PHYLOGENY Generic classification of Amaryllidaceae tribe Hippeastreae Nicolás García,1 Alan W. Meerow,2 Silvia Arroyo-Leuenberger,3 Renata S. Oliveira,4 Julie H. Dutilh,4 Pamela S. Soltis5 & Walter S. Judd5 1 Herbario EIF & Laboratorio de Sistemática y Evolución de Plantas, Facultad de Ciencias Forestales y de la Conservación de la Naturaleza, Universidad de Chile, Av. Santa Rosa 11315, La Pintana, Santiago, Chile 2 USDA-ARS-SHRS, National Germplasm Repository, 13601 Old Cutler Rd., Miami, Florida 33158, U.S.A. 3 Instituto de Botánica Darwinion, Labardén 200, CC 22, B1642HYD, San Isidro, Buenos Aires, Argentina 4 Departamento de Biologia Vegetal, Instituto de Biologia, Universidade Estadual de Campinas, Postal Code 6109, 13083-970 Campinas, SP, Brazil 5 Florida Museum of Natural History, University of Florida, Gainesville, Florida 32611, U.S.A. Address for correspondence: Nicolás García, [email protected] DOI https://doi.org/10.1002/tax.12062 Abstract A robust generic classification for Amaryllidaceae has remained elusive mainly due to the lack of unequivocal diagnostic characters, a consequence of highly canalized variation and a deeply reticulated evolutionary history. A consensus classification is pro- posed here, based on recent molecular phylogenetic studies, morphological and cytogenetic variation, and accounting for secondary criteria of classification, such as nomenclatural stability. Using the latest sutribal classification of Hippeastreae (Hippeastrinae and Traubiinae) as a foundation, we propose the recognition of six genera, namely Eremolirion gen. nov., Hippeastrum, Phycella s.l., Rhodolirium s.str., Traubia, and Zephyranthes s.l. A subgeneric classification is suggested for Hippeastrum and Zephyranthes to denote putative subclades. -
Developmental Regulation of the Expression of Amaryllidaceae Alkaloid Biosynthetic Genes in Narcissus Papyraceus
G C A T T A C G G C A T genes Article Developmental Regulation of the Expression of Amaryllidaceae Alkaloid Biosynthetic Genes in Narcissus papyraceus Tarun Hotchandani 1, Justine de Villers 1 and Isabel Desgagné-Penix 1,2,* 1 Department of Chemistry, Biochemistry and Physics, Université du Québec à Trois-Rivières, 3351 boulevard des Forges, Trois-Rivières, QC G9A 5H7, Canada 2 Plant Biology Research Group, Trois-Rivières, QC G9A 5H7, Canada * Correspondence: [email protected]; Tel.: +1-819-376-5011 Received: 6 July 2019; Accepted: 5 August 2019; Published: 7 August 2019 Abstract: Amaryllidaceae alkaloids (AAs) have multiple biological effects, which are of interest to the pharmaceutical industry. To unleash the potential of Amaryllidaceae plants as pharmaceutical crops and as sources of AAs, a thorough understanding of the AA biosynthetic pathway is needed. However, only few enzymes in the pathway are known. Here, we report the transcriptome of AA-producing paperwhites (Narcissus papyraceus Ker Gawl). We present a list of 21 genes putatively encoding enzymes involved in AA biosynthesis. Next, a cDNA library was created from 24 different samples of different parts at various developmental stages of N. papyraceus. The expression of AA biosynthetic genes was analyzed in each sample using RT-qPCR. In addition, the alkaloid content of each sample was analyzed by HPLC. Leaves and flowers were found to have the highest abundance of heterocyclic compounds, whereas the bulb, the lowest. Lycorine was also the predominant AA. The gene expression results were compared with the heterocyclic compound profiles for each sample. In some samples, a positive correlation was observed between the gene expression levels and the amount of compounds accumulated. -
Genetic Diversity and Taxonomic Studies of Allium Akaka and A
Journal of Horticultural Research 2017, vol. 25(1): 99–115 DOI: 10.1515/johr-2017-0011 _______________________________________________________________________________________________________ GENETIC DIVERSITY AND TAXONOMIC STUDIES OF ALLIUM AKAKA AND A. ELBURZENSE NATIVE TO IRAN USING MORPHOLOGICAL CHARACTERS Sajad JAFARI1, Mohammad Reza HASSANDOKHT*1, Mahdi TAHERI2, Abdolkarim KASHI1 1 Department of Horticultural Sciences, College of Agriculture and Natural Resources, University of Tehran, Karaj, Iran 2 Soil and Water Research Department, Zanjan Agriculture and Natural Resources Research and Educa- tion Center, Agricultural Research, Education and Extension Organization (AREEO), Zanjan, Iran Received: April 2017; Accepted: June 2017 ABSTRACT Two Allium species (A. akaka S.G. Gmelin and A. elburzense W.) native to Iran are used locally as the fresh vegetables and in medical therapy. They are not cultivated, but are collected from the wild, thus, will soon be threatened with extinction. In this study, the diversity of 15 wild accessions (4 accessions of A. elburzense endemic of Iran and 11 accessions of A. akaka) collected from the north-western part of Iran were evaluated with the use of 16 qualitative and 16 quantitative characteristics. The morphological char- acters with high heritability included leaf length, flower number in umbel, inflorescence diameter, leaf dry weight, bulb fresh weight, weight of 100 seeds, seed length and seed length/width. Results of the principal component analysis indicated that 92.52% of the observed variability was explained by the first six com- ponents. The first two components explained about 64.74% of the total observed variability. The first and third hierarchical cluster analysis included all accessions of A. akaka. The accessions of A. -
The Beneficial Health Effects of Vegetables and Wild Edible Greens
applied sciences Review The Beneficial Health Effects of Vegetables and Wild Edible Greens: The Case of the Mediterranean Diet and Its Sustainability Elena Chatzopoulou 1 ,Márcio Carocho 2 , Francesco Di Gioia 3 and Spyridon A. Petropoulos 4,* 1 Kent Business School, University of Kent, Canterbury CT2 7NZ, Kent, UK; [email protected] 2 Centro de Investigação de Montanha (CIMO), Instituto Politécnico de Bragança, Campus de Santa Apolónia, 5300-253 Bragança, Portugal; [email protected] 3 Department of Plant Science, Pennsylvania State University, 207 Tyson Building, University Park, PA 16802, USA; [email protected] 4 Department of Agriculture Crop Production and Rural Environment, University of Thessaly, Fytokou Street, 38446 Volos, Greece * Correspondence: [email protected]; Tel.: +30-2421-09-3196 Received: 20 November 2020; Accepted: 17 December 2020; Published: 21 December 2020 Abstract: The Mediterranean diet (MD) concept as currently known describes the dietary patterns that were followed in specific regions of the area in the 1950s and 1960s. The broad recognition of its positive effects on the longevity of Mediterranean populations also led to the adoption of this diet in other regions of the world, and scientific interest focused on revealing its health effects. MD is not only linked with eating specific nutritional food products but also with social, religious, environmental, and cultural aspects, thus representing a healthy lifestyle in general. However, modern lifestyles adhere to less healthy diets, alienating people from their heritage. Therefore, considering the increasing evidence of the beneficial health effects of adherence to the MD and the ongoing transitions in consumers’ behavior, the present review focuses on updating the scientific knowledge regarding this diet and its relevance to agrobiodiversity. -
Garlic Chives, Allium Tuberosum Allium Tuberosum Is a Late-Season Bloomer from the Onion Family
A Horticulture Information article from the Wisconsin Master Gardener website, posted 30 Aug 2010 Garlic Chives, Allium tuberosum Allium tuberosum is a late-season bloomer from the onion family. Native to southeastern Asia, it is known by several common names including garlic chives, Chinese chives or Chinese leek. It is sometimes confused with a very similar species, A. ramosum or fragrant-fl owered garlic, but that plant blooms earlier in the year and has a slightly different leaf structure. Although A. tuberosum is typically used as an ornamental in North America, it is edible and has been used in Chinese herbal medicine for a variety of ailments. This herbaceous perennial, hardy in zones 3-9, forms slowly expanding clumps of gray-green foliage 10-20” tall. Each elongate, poorly developed bulb is attached individually to a stout rhizome similar to that of an iris, and produces 4-9 leaves. The narrow, fl attened, strap- or grass-like leaves arch downward at the tips, forming a fountain of green that remains tidy and attractive throughout the growing season. When bruised or crushed the leaves (and other plant parts) have a Garlic chives bloom in the fall. strong onion or garlic scent. In warmer climates the plants are evergreen, but in colder climates they die back to the ground over the winter. Just like chives, cutting the leaves back encourages new growth. Leaves can be harvested to eat anytime they are green. The grass-like foliage of garlic chives (L). Each narrow leaf is fl attened to be roughly triangular in cross-section (C), with a rounded tip (R). -
Nomenclatural Notes on Some Autumn Flowering Daffodils (Narcissus, Amaryllidaceae)
See discussions, stats, and author profiles for this publication at: https://www.researchgate.net/publication/314088340 Nomenclatural notes on some autumn flowering daffodils (Narcissus, Amaryllidaceae) Article in Phytotaxa · February 2017 DOI: 10.11646/phytotaxa.297.2.3 CITATIONS READS 0 159 3 authors, including: Maarten Christenhusz Plant Gateway 130 PUBLICATIONS 1,547 CITATIONS SEE PROFILE Some of the authors of this publication are also working on these related projects: Ferns and lycophytes from Paraná View project Teaching Plant Systematics View project All content following this page was uploaded by Maarten Christenhusz on 24 March 2017. The user has requested enhancement of the downloaded file. Phytotaxa 297 (2): 157–167 ISSN 1179-3155 (print edition) http://www.mapress.com/j/pt/ PHYTOTAXA Copyright © 2017 Magnolia Press Article ISSN 1179-3163 (online edition) https://doi.org/10.11646/phytotaxa.297.2.3 Nomenclatural notes on some autumn flowering daffodils (Narcissus, Amaryllidaceae) HAROLD KOOPOWITZ1*, MARILYNN HOWE2 & MAARTEN J. M. CHRISTENHUSZ3, 4 1Ecology and Evolutionary Biology, University of California, Irvine, California 92705, U.S.A; e-mail: [email protected] 2P.O. Box 11372, Marina del Rey, California 90295, U.S.A. 3Plant Gateway, Hertford, Hertfordshire, U.K. 4Royal Botanic Gardens, Kew, Richmond, Surrey, U.K. *author for correspondence Keyword: Taxonomic key, historical confusion, Narcissus obsoletus, Narcissus miniatus, Narcissus serotinus Autumn flowering daffodils have been recorded in taxonomic history for at least 500 years. First descriptions were often merely based on hearsay, as they were often not studied alive. Consequently, many errors in interpretation of these names have occurred and taxonomic confusion, errors in identification and misapplication of names have led to an accumulation of taxonomic entanglement in Narcissus Linnaeus (1753: 289) nomenclature.