44Th ALBERT L. TESTER MEMORIAL SYMPOSIUM
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Fungia Fungites
University of Groningen Fungia fungites (Linnaeus, 1758) (Scleractinia, Fungiidae) is a species complex that conceals large phenotypic variation and a previously unrecognized genus Oku, Yutaro ; Iwao, Kenji ; Hoeksema, Bert W.; Dewa, Naoko ; Tachikawa, Hiroyuki ; Koido, Tatsuki ; Fukami, Hironobu Published in: Contributions to Zoology DOI: 10.1163/18759866-20191421 IMPORTANT NOTE: You are advised to consult the publisher's version (publisher's PDF) if you wish to cite from it. Please check the document version below. Document Version Publisher's PDF, also known as Version of record Publication date: 2020 Link to publication in University of Groningen/UMCG research database Citation for published version (APA): Oku, Y., Iwao, K., Hoeksema, B. W., Dewa, N., Tachikawa, H., Koido, T., & Fukami, H. (2020). Fungia fungites (Linnaeus, 1758) (Scleractinia, Fungiidae) is a species complex that conceals large phenotypic variation and a previously unrecognized genus. Contributions to Zoology, 89(2), 188-209. https://doi.org/10.1163/18759866-20191421 Copyright Other than for strictly personal use, it is not permitted to download or to forward/distribute the text or part of it without the consent of the author(s) and/or copyright holder(s), unless the work is under an open content license (like Creative Commons). Take-down policy If you believe that this document breaches copyright please contact us providing details, and we will remove access to the work immediately and investigate your claim. Downloaded from the University of Groningen/UMCG research database (Pure): http://www.rug.nl/research/portal. For technical reasons the number of authors shown on this cover page is limited to 10 maximum. -
Microbiomes of Gall-Inducing Copepod Crustaceans from the Corals Stylophora Pistillata (Scleractinia) and Gorgonia Ventalina
www.nature.com/scientificreports OPEN Microbiomes of gall-inducing copepod crustaceans from the corals Stylophora pistillata Received: 26 February 2018 Accepted: 18 July 2018 (Scleractinia) and Gorgonia Published: xx xx xxxx ventalina (Alcyonacea) Pavel V. Shelyakin1,2, Sofya K. Garushyants1,3, Mikhail A. Nikitin4, Sofya V. Mudrova5, Michael Berumen 5, Arjen G. C. L. Speksnijder6, Bert W. Hoeksema6, Diego Fontaneto7, Mikhail S. Gelfand1,3,4,8 & Viatcheslav N. Ivanenko 6,9 Corals harbor complex and diverse microbial communities that strongly impact host ftness and resistance to diseases, but these microbes themselves can be infuenced by stresses, like those caused by the presence of macroscopic symbionts. In addition to directly infuencing the host, symbionts may transmit pathogenic microbial communities. We analyzed two coral gall-forming copepod systems by using 16S rRNA gene metagenomic sequencing: (1) the sea fan Gorgonia ventalina with copepods of the genus Sphaerippe from the Caribbean and (2) the scleractinian coral Stylophora pistillata with copepods of the genus Spaniomolgus from the Saudi Arabian part of the Red Sea. We show that bacterial communities in these two systems were substantially diferent with Actinobacteria, Alphaproteobacteria, and Betaproteobacteria more prevalent in samples from Gorgonia ventalina, and Gammaproteobacteria in Stylophora pistillata. In Stylophora pistillata, normal coral microbiomes were enriched with the common coral symbiont Endozoicomonas and some unclassifed bacteria, while copepod and gall-tissue microbiomes were highly enriched with the family ME2 (Oceanospirillales) or Rhodobacteraceae. In Gorgonia ventalina, no bacterial group had signifcantly diferent prevalence in the normal coral tissues, copepods, and injured tissues. The total microbiome composition of polyps injured by copepods was diferent. -
Checklist of Fish and Invertebrates Listed in the CITES Appendices
JOINTS NATURE \=^ CONSERVATION COMMITTEE Checklist of fish and mvertebrates Usted in the CITES appendices JNCC REPORT (SSN0963-«OStl JOINT NATURE CONSERVATION COMMITTEE Report distribution Report Number: No. 238 Contract Number/JNCC project number: F7 1-12-332 Date received: 9 June 1995 Report tide: Checklist of fish and invertebrates listed in the CITES appendices Contract tide: Revised Checklists of CITES species database Contractor: World Conservation Monitoring Centre 219 Huntingdon Road, Cambridge, CB3 ODL Comments: A further fish and invertebrate edition in the Checklist series begun by NCC in 1979, revised and brought up to date with current CITES listings Restrictions: Distribution: JNCC report collection 2 copies Nature Conservancy Council for England, HQ, Library 1 copy Scottish Natural Heritage, HQ, Library 1 copy Countryside Council for Wales, HQ, Library 1 copy A T Smail, Copyright Libraries Agent, 100 Euston Road, London, NWl 2HQ 5 copies British Library, Legal Deposit Office, Boston Spa, Wetherby, West Yorkshire, LS23 7BQ 1 copy Chadwick-Healey Ltd, Cambridge Place, Cambridge, CB2 INR 1 copy BIOSIS UK, Garforth House, 54 Michlegate, York, YOl ILF 1 copy CITES Management and Scientific Authorities of EC Member States total 30 copies CITES Authorities, UK Dependencies total 13 copies CITES Secretariat 5 copies CITES Animals Committee chairman 1 copy European Commission DG Xl/D/2 1 copy World Conservation Monitoring Centre 20 copies TRAFFIC International 5 copies Animal Quarantine Station, Heathrow 1 copy Department of the Environment (GWD) 5 copies Foreign & Commonwealth Office (ESED) 1 copy HM Customs & Excise 3 copies M Bradley Taylor (ACPO) 1 copy ^\(\\ Joint Nature Conservation Committee Report No. -
Comprehensive Phylogenomic Analyses Resolve Cnidarian Relationships and the Origins of Key Organismal Traits
Comprehensive phylogenomic analyses resolve cnidarian relationships and the origins of key organismal traits Ehsan Kayal1,2, Bastian Bentlage1,3, M. Sabrina Pankey5, Aki H. Ohdera4, Monica Medina4, David C. Plachetzki5*, Allen G. Collins1,6, Joseph F. Ryan7,8* Authors Institutions: 1. Department of Invertebrate Zoology, National Museum of Natural History, Smithsonian Institution 2. UPMC, CNRS, FR2424, ABiMS, Station Biologique, 29680 Roscoff, France 3. Marine Laboratory, university of Guam, UOG Station, Mangilao, GU 96923, USA 4. Department of Biology, Pennsylvania State University, University Park, PA, USA 5. Department of Molecular, Cellular and Biomedical Sciences, University of New Hampshire, Durham, NH, USA 6. National Systematics Laboratory, NOAA Fisheries, National Museum of Natural History, Smithsonian Institution 7. Whitney Laboratory for Marine Bioscience, University of Florida, St Augustine, FL, USA 8. Department of Biology, University of Florida, Gainesville, FL, USA PeerJ Preprints | https://doi.org/10.7287/peerj.preprints.3172v1 | CC BY 4.0 Open Access | rec: 21 Aug 2017, publ: 21 Aug 20171 Abstract Background: The phylogeny of Cnidaria has been a source of debate for decades, during which nearly all-possible relationships among the major lineages have been proposed. The ecological success of Cnidaria is predicated on several fascinating organismal innovations including symbiosis, colonial body plans and elaborate life histories, however, understanding the origins and subsequent diversification of these traits remains difficult due to persistent uncertainty surrounding the evolutionary relationships within Cnidaria. While recent phylogenomic studies have advanced our knowledge of the cnidarian tree of life, no analysis to date has included genome scale data for each major cnidarian lineage. Results: Here we describe a well-supported hypothesis for cnidarian phylogeny based on phylogenomic analyses of new and existing genome scale data that includes representatives of all cnidarian classes. -
Molecular Diversity, Phylogeny, and Biogeographic Patterns of Crustacean Copepods Associated with Scleractinian Corals of the Indo-Pacific
Molecular Diversity, Phylogeny, and Biogeographic Patterns of Crustacean Copepods Associated with Scleractinian Corals of the Indo-Pacific Dissertation by Sofya Mudrova In Partial Fulfillment of the Requirements For the Degree of Doctor of Philosophy of Science King Abdullah University of Science and Technology, Thuwal, Kingdom of Saudi Arabia November, 2018 2 EXAMINATION COMMITTEE PAGE The dissertation of Sofya Mudrova is approved by the examination committee. Committee Chairperson: Dr. Michael Lee Berumen Committee Co-Chair: Dr. Viatcheslav Ivanenko Committee Members: Dr. James Davis Reimer, Dr. Takashi Gojobori, Dr. Manuel Aranda Lastra 3 COPYRIGHT PAGE © November, 2018 Sofya Mudrova All rights reserved 4 ABSTRACT Molecular diversity, phylogeny and biogeographic patterns of crustacean copepods associated with scleractinian corals of the Indo-Pacific Sofya Mudrova Biodiversity of coral reefs is higher than in any other marine ecosystem, and significant research has focused on studying coral taxonomy, physiology, ecology, and coral-associated fauna. Yet little is known about symbiotic copepods, abundant and numerous microscopic crustaceans inhabiting almost every living coral colony. In this thesis, I investigate the genetic diversity of different groups of copepods associated with reef-building corals in distinct parts of the Indo-Pacific; determine species boundaries; and reveal patterns of biogeography, endemism, and host-specificity in these symbiotic systems. A non-destructive method of DNA extraction allowed me to use an integrated approach to conduct a diversity assessment of different groups of copepods and to determine species boundaries using molecular and taxonomical methods. Overall, for this thesis, I processed and analyzed 1850 copepod specimens, representing 269 MOTUs collected from 125 colonies of 43 species of scleractinian corals from 11 locations in the Indo-Pacific. -
Conservation of Reef Corals in the South China Sea Based on Species and Evolutionary Diversity
Biodivers Conserv DOI 10.1007/s10531-016-1052-7 ORIGINAL PAPER Conservation of reef corals in the South China Sea based on species and evolutionary diversity 1 2 3 Danwei Huang • Bert W. Hoeksema • Yang Amri Affendi • 4 5,6 7,8 Put O. Ang • Chaolun A. Chen • Hui Huang • 9 10 David J. W. Lane • Wilfredo Y. Licuanan • 11 12 13 Ouk Vibol • Si Tuan Vo • Thamasak Yeemin • Loke Ming Chou1 Received: 7 August 2015 / Revised: 18 January 2016 / Accepted: 21 January 2016 Ó Springer Science+Business Media Dordrecht 2016 Abstract The South China Sea in the Central Indo-Pacific is a large semi-enclosed marine region that supports an extraordinary diversity of coral reef organisms (including stony corals), which varies spatially across the region. While one-third of the world’s reef corals are known to face heightened extinction risk from global climate and local impacts, prospects for the coral fauna in the South China Sea region amidst these threats remain poorly understood. In this study, we analyse coral species richness, rarity, and phylogenetic Communicated by Dirk Sven Schmeller. Electronic supplementary material The online version of this article (doi:10.1007/s10531-016-1052-7) contains supplementary material, which is available to authorized users. & Danwei Huang [email protected] 1 Department of Biological Sciences and Tropical Marine Science Institute, National University of Singapore, Singapore 117543, Singapore 2 Naturalis Biodiversity Center, PO Box 9517, 2300 RA Leiden, The Netherlands 3 Institute of Biological Sciences, Faculty of -
Downloaded from Brill.Com10/11/2021 12:50:19PM Via Free Access 202 RAUCH ET AL
Contributions to Zoology 88 (2019) 201-235 CTOZ brill.com/ctoz Shrimps of the genus Periclimenes (Crustacea, Decapoda, Palaemonidae) associated with mushroom corals (Scleractinia, Fungiidae): linking DNA barcodes to morphology Cessa Rauch Department of Taxonomy & Systematics, Naturalis Biodiversity Center, P.O. Box 9517, 2300 RA Leiden, The Netherlands Department of Natural History, Section of Taxonomy and Evolution, University Museum of Bergen, University of Bergen, PB7800, 5020 Bergen, Norway Bert W. Hoeksema Department of Taxonomy & Systematics, Naturalis Biodiversity Center, P.O. Box 9517, 2300 RA Leiden, The Netherlands Bambang Hermanto Technical Implementation Unit for Marine Biota Conservation, Research Centre for Oceanog- raphy (RCO-LIPI), Bitung, Indonesia Charles H.J.M. Fransen Department of Taxonomy & Systematics, Naturalis Biodiversity Center, P.O. Box 9517, 2300 RA Leiden, The Netherlands [email protected] Abstract Most marine palaemonid shrimp species live in symbiosis with invertebrates of various phyla. These as- sociations range from weak epibiosis to obligatory endosymbiosis and from restricted commensalism to semi-parasitism. On coral reefs, such symbiotic shrimps can contribute to the associated biodiversity of reef corals. Among the host taxa, mushroom corals (Cnidaria: Anthozoa: Fungiidae) are known to harbour various groups of symbionts, including shrimps. Some but not all of these associated species are host-specific. Because data on the host specificity of shrimps on mushroom corals are scarce, shrimp spe- cies of the genus Periclimenes were collected from mushroom corals during fieldwork in Lembeh Strait, © RAUCH ET AL., 2019 | doi:10.1163/18759866-20191357 This is an open access article distributed under the terms of the prevailing cc-by license at the time of publication. -
A Molecularly Based Phylogeny Reconstruction of Mushroom Corals
Contributions to Zoology, 80 (2) 107-132 (2011) A molecularly based phylogeny reconstruction of mushroom corals (Scleractinia: Fungiidae) with taxonomic consequences and evolutionary implications for life history traits Arjan Gittenberger1, 2, Bastian T. Reijnen1, Bert W. Hoeksema1, 3 1 Department of Marine Zoology, Netherlands Centre for Biodiversity Naturalis, PO Box 9517, 2300 RA Leiden, The Netherlands 2 Institute for Environmental Sciences and Institute for Biology, Leiden University, PO Box 9516, 2300 RA Leiden, The Netherlands 3 E-mail: [email protected] Key words: COI, evolutionary history, ITS 1 & 2, maximum coral size, polystomatism, reproduction strategy Abstract Sequence alignment and phylogenetic analyses ............. 112 Evolution of life history traits ............................................. 113 The phylogenetic relationships of the Fungiidae, a family of pre- Results ............................................................................................. 113 dominantly free-living, zooxanthellate, reef corals, were studied Molecular phylogeny reconstructions .............................. 113 by sequencing a part of the mitochondrial Cytochrome Oxidase Evolutionary trends in morphology and life I (COI) and the complete ribosomal Internal Transcribed Spacers history traits ............................................................................. 114 (ITS) I & II of specimens from various locations in the Indo- Discussion ..................................................................................... -
Lobactis Scutaria in Hawai‘I
A New Host and Range Record for the Gall Crab Fungicola fagei as a Symbiont of the Mushroom Coral Lobactis scutaria in Hawai‘i Bert W. Hoeksema, Roland Butôt, Jaaziel E. García-Hernández Pacific Science, Volume 72, Number 2, April 2018, pp. 251-261 (Article) Published by University of Hawai'i Press For additional information about this article https://muse.jhu.edu/article/690266 [ This content has been declared free to read by the pubisher during the COVID-19 pandemic. ] A New Host and Range Record for the Gall Crab Fungicola fagei as a Symbiont of the Mushroom Coral Lobactis scutaria in Hawai‘i1 Bert W. Hoeksema,2,4 Roland Butôt,2 and Jaaziel E. García-Hernández3 Abstract: The coral crab Fungicola fagei (Decapoda: Brachyura: Cryptochiridae) is recorded for the first time from the Hawaiian Islands, where it was discovered in a previously unknown association with the solitary, free-living mushroom coral Lobactis scutaria (Anthozoa: Scleractinia: Fungiidae). The associated crab species was discovered off Hilo on the island of Hawai‘i, where it appeared to be relatively common. It could have been previously overlooked because of its small size (max. ca. 1 cm long) and its hidden life style inside the host coral. Species identification is based on the morphology of the carapace and use of the cyto- chrome oxidase subunit I (COI ) barcode gene as molecular marker. Fungicola fagei is known from other localities in the Indo-West Pacific region, where it is only hosted by mushroom coral species of the genera Podabacia and Sandalolitha. The record of F. -
Phylogenomics Provides a Robust Topology of the Major Cnidarian Lineages and Insights on the Origins of Key Organismal Traits Ehsan Kayal1,2, Bastian Bentlage1,3, M
Kayal et al. BMC Evolutionary Biology (2018) 18:68 https://doi.org/10.1186/s12862-018-1142-0 RESEARCH ARTICLE Open Access Phylogenomics provides a robust topology of the major cnidarian lineages and insights on the origins of key organismal traits Ehsan Kayal1,2, Bastian Bentlage1,3, M. Sabrina Pankey5 , Aki H. Ohdera4 , Monica Medina4 , David C. Plachetzki5* , Allen G. Collins1,6 and Joseph F. Ryan7,8* Abstract Background: The phylogeny of Cnidaria has been a source of debate for decades, during which nearly all-possible relationships among the major lineages have been proposed. The ecological success of Cnidaria is predicated on several fascinating organismal innovations including stinging cells, symbiosis, colonial body plans and elaborate life histories. However, understanding the origins and subsequent diversification of these traits remains difficult due to persistent uncertainty surrounding the evolutionary relationships within Cnidaria. While recent phylogenomic studies have advanced our knowledge of the cnidarian tree of life, no analysis to date has included genome-scale data for each major cnidarian lineage. Results: Here we describe a well-supported hypothesis for cnidarian phylogeny based on phylogenomic analyses of new and existing genome-scale data that includes representatives of all cnidarian classes. Our results are robust to alternative modes of phylogenetic estimation and phylogenomic dataset construction. We show that two popular phylogenomic matrix construction pipelines yield profoundly different datasets, both in the identities and in the functional classes of the loci they include, but resolve the same topology. We then leverage our phylogenetic resolution of Cnidaria to understand the character histories of several critical organismal traits. -
Cop18 Doc. 99 A6
CoP18 Doc. 99 Annex 6 (English only / seulement en anglais / únicamente en inglés) Annex 6 to CoP18 Doc. 99 Nomenclature document – proposed changes in the published literature concerning nomenclature of CITES-listed animal species for which the Animals Committee, at the time of CoP18 document submission, has not yet reached a recommendation on adoption or rejection for CITES purposes. For ease of navigation, this Annex is divided into seven sections: Annex 6A: Mammals pages 2 - 8 Annex 6B: Birds (to be reviewed in conjunction with Annex 5) pages 9-36 Annex 6C: Reptiles pages 37-44 Annex 6D: Amphibians pages 45-46 Annex 6E: Cartilaginous and bony Fishes pages 47-48 Annex 6F: Invertebrates other than corals pages 49-50 Annex 6G: Corals pages 51-86 In the column ‘Appendix’, the CITES Appendix in which the species or higher taxon is listed is given; in many but not all cases, the Annex in which the species is placed in EU regulation (A, B or C) is also listed. In Annexes 6A, 6C, 6D, 6E and 6F, multiple references are sometimes cited that each document the described nomenclatural change; in those cases, individual references within the table cell are separated by ‘##’. In Annexes 6B and 6G specific symbols are used to indicate nomenclatural splits, lumps and other changes, as follows: The symbol '<' is used to indicate species lumps, i.e. taxa currently recognised as separate, but that have been grouped together as synonym or subspecies under another name in the associated reference. The symbol '>' is used to indicate species splits, i.e. -
Checklist of Fish and Invertebrates Listed in the CITES Appendices and in EC Regulation No
JNCC Report No. 379 Checklist of fish and invertebrates listed in the CITES appendices and in EC Regulation No. 338/97 7th Edition 2005 compiled by UNEP-WCMC © JNCC 2005 The JNCC is the forum through which the three country conservation agencies - the Countryside Council for Wales, English Nature and Scottish Natural Heritage - deliver their statutory responsibilities for Great Britain as a whole, and internationally. These responsibilities contribute to sustaining and enriching biological diversity, enhancing geological features and sustaining natural systems. As well as a source of advice and knowledge for the public, JNCC is the Government's wildlife adviser, providing guidance on the development of policies for, or affecting, nature conservation in Great Britain or internationally. Published by: Joint Nature Conservation Committee Copyright: 2005 Joint Nature Conservation Committee ISBN: 1st edition published 1988 ISBN 0-86139-466-6 2nd edition published 1993 ISBN 1-873701-47-0 3rd edition published 1995 ISSN 0963-8091 4th edition published 1999 ISSN 0963-8091 5th edition published 2001 ISSN 0963-8091 6th edition published 2003 ISSN 0963-8091 7th edition published 2005 ISSN 0963-8091 Citation: UNEP-WCMC (2005). Checklist of fish and invertebrates listed in the CITES appendices and in EC Regulation 338/97. 7th Edition. JNCC Report, No. 379. Further copies of this report are available from: CITES Unit Joint Nature Conservation Committee Monkstone House City Road Peterborough PE1 1JY United Kingdom Tel: +44 1733 562626 Fax: +44 1733 555948 This document can also be downloaded from: http://www.ukcites.gov.uk and www.jncc.gov.uk Prepared under contract from the Joint Nature Conservation Committee by UNEP- WCMC.