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A Redescription and Phylogenetic Analysis of the Cretaceous Fossil Lizard Polyglyphanodon Sternbergi Gilmore, 1940
A Redescription and Phylogenetic Analysis of the Cretaceous Fossil Lizard Polyglyphanodon sternbergi Gilmore, 1940 by Meredith Austin Fontana B.S. in Biology, May 2011, The University of Texas at Austin A Thesis submitted to The Faculty of The Columbian College of Arts and Sciences of The George Washington University in partial fulfillment of the requirements for the degree of Master of Science August 31, 2014 Thesis directed by James M. Clark Ronald Weintraub Professor of Biology © Copyright 2014 by Meredith Austin Fontana All rights reserved ii This thesis is dedicated to the memory of my grandmother, Lee Landsman Zelikow – my single greatest inspiration, whose brilliant mind and unconditional love has profoundly shaped and continues to shape the person I am today. iii ACKNOWLEDGEMENTS I am deeply grateful to my graduate advisor Dr. James Clark for his support and guidance throughout the completion of this thesis. This work would not have been possible without his invaluable assistance and commitment to my success, and it has been a privilege to be his student. I would also like to express my appreciation to the additional members of my Master’s examination committee, Dr. Alexander Pyron and Dr. Hans-Dieter Sues, for generously contributing their knowledge and time toward this project and for providing useful comments on the manuscript of this thesis. I am especially grateful to Dr. Sues for allowing me access to the exquisite collection of Polyglyphanodon sternbergi specimens at the National Museum of Natural History. I am also extremely thankful to the many faculty members, colleagues and friends at the George Washington University who have shared their wisdom and given me persistent encouragement. -
A New Microvertebrate Assemblage from the Mussentuchit
A new microvertebrate assemblage from the Mussentuchit Member, Cedar Mountain Formation: insights into the paleobiodiversity and paleobiogeography of early Late Cretaceous ecosystems in western North America Haviv M. Avrahami1,2,3, Terry A. Gates1, Andrew B. Heckert3, Peter J. Makovicky4 and Lindsay E. Zanno1,2 1 Department of Biological Sciences, North Carolina State University, Raleigh, NC, USA 2 North Carolina Museum of Natural Sciences, Raleigh, NC, USA 3 Department of Geological and Environmental Sciences, Appalachian State University, Boone, NC, USA 4 Field Museum of Natural History, Chicago, IL, USA ABSTRACT The vertebrate fauna of the Late Cretaceous Mussentuchit Member of the Cedar Mountain Formation has been studied for nearly three decades, yet the fossil-rich unit continues to produce new information about life in western North America approximately 97 million years ago. Here we report on the composition of the Cliffs of Insanity (COI) microvertebrate locality, a newly sampled site containing perhaps one of the densest concentrations of microvertebrate fossils yet discovered in the Mussentuchit Member. The COI locality preserves osteichthyan, lissamphibian, testudinatan, mesoeucrocodylian, dinosaurian, metatherian, and trace fossil remains and is among the most taxonomically rich microvertebrate localities in the Mussentuchit Submitted 30 May 2018 fi fi Accepted 8 October 2018 Member. To better re ne taxonomic identi cations of isolated theropod dinosaur Published 16 November 2018 teeth, we used quantitative analyses of taxonomically comprehensive databases of Corresponding authors theropod tooth measurements, adding new data on theropod tooth morphodiversity in Haviv M. Avrahami, this poorly understood interval. We further provide the first descriptions of [email protected] tyrannosauroid premaxillary teeth and document the earliest North American record of Lindsay E. -
An Intial Estimation of the Numbers and Identification of Extant Non
Answers Research Journal 8 (2015):171–186. www.answersingenesis.org/arj/v8/lizard-kinds-order-squamata.pdf $Q,QLWLDO(VWLPDWLRQRIWKH1XPEHUVDQG,GHQWLÀFDWLRQRI Extant Non-Snake/Non-Amphisbaenian Lizard Kinds: Order Squamata Tom Hennigan, Truett-McConnell College, Cleveland, Georgia. $EVWUDFW %LRV\VWHPDWLFVLVLQJUHDWÁX[WRGD\EHFDXVHRIWKHSOHWKRUDRIJHQHWLFUHVHDUFKZKLFKFRQWLQXDOO\ UHGHÀQHVKRZZHSHUFHLYHUHODWLRQVKLSVEHWZHHQRUJDQLVPV'HVSLWHWKHODUJHDPRXQWRIGDWDEHLQJ SXEOLVKHGWKHFKDOOHQJHLVKDYLQJHQRXJKNQRZOHGJHDERXWJHQHWLFVWRGUDZFRQFOXVLRQVUHJDUGLQJ WKHELRORJLFDOKLVWRU\RIRUJDQLVPVDQGWKHLUWD[RQRP\&RQVHTXHQWO\WKHELRV\VWHPDWLFVIRUPRVWWD[D LVLQJUHDWIOX[DQGQRWZLWKRXWFRQWURYHUV\E\SUDFWLWLRQHUVLQWKHILHOG7KHUHIRUHWKLVSUHOLPLQDU\SDSHU LVmeant to produce a current summary of lizard systematics, as it is understood today. It is meant to lay a JURXQGZRUNIRUFUHDWLRQV\VWHPDWLFVZLWKWKHJRDORIHVWLPDWLQJWKHQXPEHURIEDUDPLQVEURXJKWRQ WKH $UN %DVHG RQ WKH DQDO\VHV RI FXUUHQW PROHFXODU GDWD WD[RQRP\ K\EULGL]DWLRQ FDSDELOLW\ DQG VWDWLVWLFDO EDUDPLQRORJ\ RI H[WDQW RUJDQLVPV D WHQWDWLYH HVWLPDWH RI H[WDQW QRQVQDNH QRQ DPSKLVEDHQLDQOL]DUGNLQGVZHUHWDNHQRQERDUGWKH$UN,WLVKRSHGWKDWWKLVSDSHUZLOOHQFRXUDJH IXWXUHUHVHDUFKLQWRFUHDWLRQLVWELRV\VWHPDWLFV Keywords: $UN(QFRXQWHUELRV\VWHPDWLFVWD[RQRP\UHSWLOHVVTXDPDWDNLQGEDUDPLQRORJ\OL]DUG ,QWURGXFWLRQ today may change tomorrow, depending on the data Creation research is guided by God’s Word, which and assumptions about that data. For example, LVIRXQGDWLRQDOWRWKHVFLHQWLÀFPRGHOVWKDWDUHEXLOW naturalists assume randomness and universal 7KHELEOLFDODQGVFLHQWLÀFFKDOOHQJHLVWRLQYHVWLJDWH -
The Sclerotic Ring: Evolutionary Trends in Squamates
The sclerotic ring: Evolutionary trends in squamates by Jade Atkins A Thesis Submitted to Saint Mary’s University, Halifax, Nova Scotia in Partial Fulfillment of the Requirements for the Degree of Master of Science in Applied Science July, 2014, Halifax Nova Scotia © Jade Atkins, 2014 Approved: Dr. Tamara Franz-Odendaal Supervisor Approved: Dr. Matthew Vickaryous External Examiner Approved: Dr. Tim Fedak Supervisory Committee Member Approved: Dr. Ron Russell Supervisory Committee Member Submitted: July 30, 2014 Dedication This thesis is dedicated to my family, friends, and mentors who helped me get to where I am today. Thank you. ! ii Table of Contents Title page ........................................................................................................................ i Dedication ...................................................................................................................... ii List of figures ................................................................................................................. v List of tables ................................................................................................................ vii Abstract .......................................................................................................................... x List of abbreviations and definitions ............................................................................ xi Acknowledgements .................................................................................................... -
The Paradox of Nocturnality in Lizards
The paradox of nocturnality in lizards Kelly Maree Hare A thesis submitted to Victoria University of Wellington in fulfilment of the requirement for the degree of Doctor of Philosophy in Zoology Victoria University of Wellington Te Whare Wnanga o te poko o te Ika a Mui 2005 Harvard Law of Animal Behaviour: “Under the most closely defined experimental conditions, the animal does what it damned well pleases” Anon. i n g a P e e L : o t o h P Hoplodactylus maculatus foraging on flowering Phormium cookianum STATEMENT OF AUTHORSHIP BY PHD CANDIDATE Except where specific reference is made in the main text of the thesis, this thesis contains no material extracted in whole or in part from a thesis, dissertation, or research paper presented by me for another degree or diploma. No other person’s work (published or unpublished) has been used without due acknowledgment in the main text of the thesis. This thesis has not been submitted for the award of any other degree or diploma in any other tertiary institution. All chapters are the product of investigations in collaboration with other researchers, and co-authors are listed at the start of each chapter. In all cases I am the principal author and contributor of the research. I certify that this thesis is 100,000 words or less, including all scholarly apparatus. ……………………… Kelly Maree Hare May 2005 i Abstract Paradoxically, nocturnal lizards prefer substantially higher body temperatures than are achievable at night and are therefore active at thermally suboptimal temperatures. In this study, potential physiological mechanisms were examined that may enable nocturnal lizards to counteract the thermal handicap of activity at low temperatures: 1) daily rhythms of metabolic rate, 2) metabolic rate at low and high temperatures, 3) locomotor energetics, and 4) biochemical adaptation. -
Universitatea “ Babeş – Bolyai “ Cluj
“ BABEŞ - BOLYAI “ UNIVERSITY, CLUJ - NAPOCA FACULTY OF ENVIRONMENTAL SCIENCE AND ENGINEERING UPPER CRETACEOUS CONTINENTAL VERTEBRATE ASSEMBLAGES FROM METALIFERI SEDIMENTARY AREA: SYSTEMATICS, PALEOECOLOGY AND PALEOBIOGEOGRAPHY PhD THESIS - ABSTRACT - Scientific advisor: PhD Student: Prof. Dr. CODREA VLAD JIPA CĂTĂLIN-CONSTANTIN 2012 CLUJ-NAPOCA SUMMARY Chapter 1 - Introduction ................................................................................................. 1 Chapter 2 - Geological setting ........................................................................................ 3 Chapter 3 - Evolution of the knowledge on the Uppermost Cretaceous vertebrates in Romania ............................................................................................................................ 8 Chapter 4 - Systematic paleontology ............................................................................ 12 Chapter 5 - Taphonomy ................................................................................................ 19 Chapter 6 - Paleoecology ............................................................................................... 22 Chapter 7 - Paleoebiogeography ................................................................................... 29 Chapter 8 - Conclusions ................................................................................................ 31 Selected references ......................................................................................................... 36 Upper Cretaceous -
A New Teiidae Species (Squamata, Scincomorpha) from the Late Pleistocene of Rio Grande Do Sul State, Brazil
Rev. bras. paleontol. 10(3):181-194, Setembro/Dezembro 2007 © 2007 by the Sociedade Brasileira de Paleontologia A NEW TEIIDAE SPECIES (SQUAMATA, SCINCOMORPHA) FROM THE LATE PLEISTOCENE OF RIO GRANDE DO SUL STATE, BRAZIL ANNIE SCHMALTZ HSIOU Museu de Ciências Naturais, FZB-RS, Av. Salvador França, 1427, 90690-000, Jardim Botânico, Porto Alegre, RS, Brazil. [email protected] ABSTRACT – The fossil record of the Teiidae in South America is restricted almost exclusively to the Cenozoic, with the group mainly represented by Tupinambis during Miocene-Holocene times. Currently, this genus includes the largest lizards of the New World as well as the largest members of the family. Tupinambis uruguaianensis nov. sp., the first fossil squamate from Rio Grande do Sul State, is represented by a right lower jaw, basicranium, three dorsal vertebrae, and a left radius and ulna of the same individual. The material comes from the Touro Passo Formation, where reptiles were previously represented only by Testudines. The new species shares several characters with the living species of Tupinambis, but is distinguished from all them by an articular bone with a deeply concave ventral margin, angular process is more rounded, proportionally larger and projecting beyond the ventral and posterior adjacent limits, and a very protuberant adductor crest so that the lateral articular bone surface is lateroventrally directed. Key words: Squamata, Teiidae, Tupinambis, Late Pleistocene, Rio Grande do Sul State, southern Brazil. RESUMO – O registro da família Teiidae na América do Sul é restrito quase que exclusivamente ao Cenozóico e o grupo é principalmente representado por Tupinambis, no intervalo Mioceno-Holoceno. -
Tiago Rodrigues Simões
Diapsid Phylogeny and the Origin and Early Evolution of Squamates by Tiago Rodrigues Simões A thesis submitted in partial fulfillment of the requirements for the degree of Doctor of Philosophy in SYSTEMATICS AND EVOLUTION Department of Biological Sciences University of Alberta © Tiago Rodrigues Simões, 2018 ABSTRACT Squamate reptiles comprise over 10,000 living species and hundreds of fossil species of lizards, snakes and amphisbaenians, with their origins dating back at least as far back as the Middle Jurassic. Despite this enormous diversity and a long evolutionary history, numerous fundamental questions remain to be answered regarding the early evolution and origin of this major clade of tetrapods. Such long-standing issues include identifying the oldest fossil squamate, when exactly did squamates originate, and why morphological and molecular analyses of squamate evolution have strong disagreements on fundamental aspects of the squamate tree of life. Additionally, despite much debate, there is no existing consensus over the composition of the Lepidosauromorpha (the clade that includes squamates and their sister taxon, the Rhynchocephalia), making the squamate origin problem part of a broader and more complex reptile phylogeny issue. In this thesis, I provide a series of taxonomic, phylogenetic, biogeographic and morpho-functional contributions to shed light on these problems. I describe a new taxon that overwhelms previous hypothesis of iguanian biogeography and evolution in Gondwana (Gueragama sulamericana). I re-describe and assess the functional morphology of some of the oldest known articulated lizards in the world (Eichstaettisaurus schroederi and Ardeosaurus digitatellus), providing clues to the ancestry of geckoes, and the early evolution of their scansorial behaviour. -
The Making of Calibration Sausage Exemplified by Recalibrating the Transcriptomic Timetree of Jawed Vertebrates
bioRxiv preprint doi: https://doi.org/10.1101/2019.12.19.882829; this version posted January 5, 2021. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-ND 4.0 International license. The making of calibration sausage exemplified by recalibrating the transcriptomic timetree of jawed vertebrates 1 David Marjanović 2 Department of Evolutionary Morphology, Science Programme “Evolution and Geoprocesses”, 3 Museum für Naturkunde – Leibniz Institute for Evolutionary and Biodiversity Research, Berlin, 4 Germany 5 ORCID: 0000-0001-9720-7726 6 Correspondence: 7 David Marjanović 8 [email protected] 9 Keywords: timetree, calibration, divergence date, Gnathostomata, Vertebrata 10 Abstract 11 Molecular divergence dating has the potential to overcome the incompleteness of the fossil record in 12 inferring when cladogenetic events (splits, divergences) happened, but needs to be calibrated by the 13 fossil record. Ideally but unrealistically, this would require practitioners to be specialists in molecular 14 evolution, in the phylogeny and the fossil record of all sampled taxa, and in the chronostratigraphy of 15 the sites the fossils were found in. Paleontologists have therefore tried to help by publishing 16 compendia of recommended calibrations, and molecular biologists unfamiliar with the fossil record 17 have made heavy use of such works (in addition to using scattered primary sources -
Final Copy 2019 10 01 Herrera
This electronic thesis or dissertation has been downloaded from Explore Bristol Research, http://research-information.bristol.ac.uk Author: Herrera Flores, Jorge Alfredo A Title: The macroevolution and macroecology of Mesozoic lepidosaurs General rights Access to the thesis is subject to the Creative Commons Attribution - NonCommercial-No Derivatives 4.0 International Public License. A copy of this may be found at https://creativecommons.org/licenses/by-nc-nd/4.0/legalcode This license sets out your rights and the restrictions that apply to your access to the thesis so it is important you read this before proceeding. Take down policy Some pages of this thesis may have been removed for copyright restrictions prior to having it been deposited in Explore Bristol Research. However, if you have discovered material within the thesis that you consider to be unlawful e.g. breaches of copyright (either yours or that of a third party) or any other law, including but not limited to those relating to patent, trademark, confidentiality, data protection, obscenity, defamation, libel, then please contact [email protected] and include the following information in your message: •Your contact details •Bibliographic details for the item, including a URL •An outline nature of the complaint Your claim will be investigated and, where appropriate, the item in question will be removed from public view as soon as possible. This electronic thesis or dissertation has been downloaded from Explore Bristol Research, http://research-information.bristol.ac.uk Author: Herrera Flores, Jorge Alfredo A Title: The macroevolution and macroecology of Mesozoic lepidosaurs General rights Access to the thesis is subject to the Creative Commons Attribution - NonCommercial-No Derivatives 4.0 International Public License. -
Antimicrobial Peptides in Reptiles
Pharmaceuticals 2014, 7, 723-753; doi:10.3390/ph7060723 OPEN ACCESS pharmaceuticals ISSN 1424-8247 www.mdpi.com/journal/pharmaceuticals Review Antimicrobial Peptides in Reptiles Monique L. van Hoek National Center for Biodefense and Infectious Diseases, and School of Systems Biology, George Mason University, MS1H8, 10910 University Blvd, Manassas, VA 20110, USA; E-Mail: [email protected]; Tel.: +1-703-993-4273; Fax: +1-703-993-7019. Received: 6 March 2014; in revised form: 9 May 2014 / Accepted: 12 May 2014 / Published: 10 June 2014 Abstract: Reptiles are among the oldest known amniotes and are highly diverse in their morphology and ecological niches. These animals have an evolutionarily ancient innate-immune system that is of great interest to scientists trying to identify new and useful antimicrobial peptides. Significant work in the last decade in the fields of biochemistry, proteomics and genomics has begun to reveal the complexity of reptilian antimicrobial peptides. Here, the current knowledge about antimicrobial peptides in reptiles is reviewed, with specific examples in each of the four orders: Testudines (turtles and tortosises), Sphenodontia (tuataras), Squamata (snakes and lizards), and Crocodilia (crocodilans). Examples are presented of the major classes of antimicrobial peptides expressed by reptiles including defensins, cathelicidins, liver-expressed peptides (hepcidin and LEAP-2), lysozyme, crotamine, and others. Some of these peptides have been identified and tested for their antibacterial or antiviral activity; others are only predicted as possible genes from genomic sequencing. Bioinformatic analysis of the reptile genomes is presented, revealing many predicted candidate antimicrobial peptides genes across this diverse class. The study of how these ancient creatures use antimicrobial peptides within their innate immune systems may reveal new understandings of our mammalian innate immune system and may also provide new and powerful antimicrobial peptides as scaffolds for potential therapeutic development. -
Microvertebrates of the Lourinhã Formation (Late Jurassic, Portugal)
Alexandre Renaud Daniel Guillaume Licenciatura em Biologia celular Mestrado em Sistemática, Evolução, e Paleobiodiversidade Microvertebrates of the Lourinhã Formation (Late Jurassic, Portugal) Dissertação para obtenção do Grau de Mestre em Paleontologia Orientador: Miguel Moreno-Azanza, Faculdade de Ciências e Tecnologia da Universidade Nova de Lisboa Co-orientador: Octávio Mateus, Faculdade de Ciências e Tecnologia da Universidade Nova de Lisboa Júri: Presidente: Prof. Doutor Paulo Alexandre Rodrigues Roque Legoinha (FCT-UNL) Arguente: Doutor Hughes-Alexandres Blain (IPHES) Vogal: Doutor Miguel Moreno-Azanza (FCT-UNL) Júri: Dezembro 2018 MICROVERTEBRATES OF THE LOURINHÃ FORMATION (LATE JURASSIC, PORTUGAL) © Alexandre Renaud Daniel Guillaume, FCT/UNL e UNL A Faculdade de Ciências e Tecnologia e a Universidade Nova de Lisboa tem o direito, perpétuo e sem limites geográficos, de arquivar e publicar esta dissertação através de exemplares impressos reproduzidos em papel ou de forma digital, ou por qualquer outro meio conhecido ou que venha a ser inventado, e de a divulgar através de repositórios científicos e de admitir a sua cópia e distribuição com objetivos educacionais ou de investigação, não comerciais, desde que seja dado crédito ao autor e editor. ACKNOWLEDGMENTS First of all, I would like to dedicate this thesis to my late grandfather “Papi Joël”, who wanted to tie me to a tree when I first start my journey to paleontology six years ago, in Paris. And yet, he never failed to support me at any cost, even if he did not always understand what I was doing and why I was doing it. He is always in my mind. Merci papi ! This master thesis has been one-year long project during which one there were highs and lows.