The Clinical Significance of the Organic Acids Test
Total Page:16
File Type:pdf, Size:1020Kb
Load more
Recommended publications
-
Monosaccharides and Their Derivatives in Carbonaceous Meteorites: a Scenario for Their Synthesis and Onset of Enantiomeric Excesses
life Review Monosaccharides and Their Derivatives in Carbonaceous Meteorites: A Scenario for Their Synthesis and Onset of Enantiomeric Excesses George Cooper 1,*, Andro C. Rios 1,2,* and Michel Nuevo 1,3 ID 1 NASA-Ames Research Center, Moffett Field, CA 94035, USA; [email protected] 2 Blue Marble Space, 1001 4th Ave, Ste 3201, Seattle, WA 98154, USA 3 Bay Area Environmental Research Institute, NASA Research Park, Moffett Field, CA 94035, USA * Correspondence: [email protected] (G.C.); [email protected] (A.C.R.) Received: 5 June 2018; Accepted: 22 August 2018; Published: 27 August 2018 Abstract: Carbonaceous meteorites provide the best glimpse into the solar system’s earliest physical and chemical processes. These ancient objects, ~4.56 billion years old, contain evidence of phenomena ranging from solar system formation to the synthesis of organic compounds by aqueous and (likely) low-temperature photolytic reactions. Collectively, chemical reactions resulted in an insoluble kerogen-like carbon phase and a complex mixture of discrete soluble compounds including amino acids, nucleobases, and monosaccharide (or “sugar”) derivatives. This review presents the documented search for sugars and their derivatives in carbonaceous meteorites. We examine early papers, published in the early 1960s, and note the analytical methods used for meteorite analysis as well as conclusions on the results. We then present the recent finding of sugar derivatives including sugar alcohols and several sugar acids: The latter compounds were found to possess unusual “D” enantiomeric (mirror-image) excesses. After discussions on the possible roles of interstellar grain chemistry and meteorite parent body aqueous activity in the synthesis of sugar derivatives, we present a scenario that suggests that most of Earth’s extraterrestrial sugar alcohols (e.g., glycerol) were synthesized by interstellar irradiation and/or cold grain chemistry and that the early solar disk was the location of the initial enantiomeric excesses in meteoritic sugar derivatives. -
Bacterial Dissimilation of Citric Acid Carl Robert Brewer Iowa State College
Iowa State University Capstones, Theses and Retrospective Theses and Dissertations Dissertations 1939 Bacterial dissimilation of citric acid Carl Robert Brewer Iowa State College Follow this and additional works at: https://lib.dr.iastate.edu/rtd Part of the Microbiology Commons Recommended Citation Brewer, Carl Robert, "Bacterial dissimilation of citric acid " (1939). Retrospective Theses and Dissertations. 13227. https://lib.dr.iastate.edu/rtd/13227 This Dissertation is brought to you for free and open access by the Iowa State University Capstones, Theses and Dissertations at Iowa State University Digital Repository. It has been accepted for inclusion in Retrospective Theses and Dissertations by an authorized administrator of Iowa State University Digital Repository. For more information, please contact [email protected]. INFORMATION TO USERS This manuscript has been reproduced from the microfilm master. UMI films the text directly from the original or copy submitted. Thus, some thesis and dissertation copies are in typewriter face, while others may be from any type of computer printer. The quality of this reproduction is dependent upon the quality of the copy submitted. Brol<en or indistinct print, colored or poor quality illustrations and photographs, print bleedthrough, substandard margins, and improper alignment can adversely affect reproduction. In the unlikely event that the author did not send UMI a complete manuscript and there are missing pages, these will be noted. Also, if unauthorized copyright material had to be removed, a note will indicate the deletion. Oversize materials (e.g., maps, drawings, charts) are reproduced by sectioning the original, beginning at the upper left-hand comer and continuing from left to right in equal sections with small overlaps. -
Aconitic Acid from Sugarcane
Louisiana State University LSU Digital Commons LSU Doctoral Dissertations Graduate School 2007 Aconitic acid from sugarcane: production and industrial application Nicolas Javier Gil Zapata Louisiana State University and Agricultural and Mechanical College, [email protected] Follow this and additional works at: https://digitalcommons.lsu.edu/gradschool_dissertations Part of the Engineering Science and Materials Commons Recommended Citation Gil Zapata, Nicolas Javier, "Aconitic acid from sugarcane: production and industrial application" (2007). LSU Doctoral Dissertations. 3740. https://digitalcommons.lsu.edu/gradschool_dissertations/3740 This Dissertation is brought to you for free and open access by the Graduate School at LSU Digital Commons. It has been accepted for inclusion in LSU Doctoral Dissertations by an authorized graduate school editor of LSU Digital Commons. For more information, please [email protected]. ACONITIC ACID FROM SUGARCANE: PRODUCTION AND INDUSTRIAL APPLICATION A Dissertation Submitted to the Graduate Faculty of the Louisiana State University and Agricultural and Mechanical College in partial fulfillment of the requirements for the degree of Doctor in Philosophy In The Interdepartmental Program in Engineering Science by Nicolas Javier Gil Zapata B.S., Universidad Industrial de Santander, Colombia, 1988 December, 2007 ACKNOWLEDGEMENTS I sincerely thank my major advisor Dr. Michael Saska for his guidance, assistance, and continuous support throughout my graduate studies at LSU, and for sharing his knowledge and experience of the sugarcane industry. I extend my sincere appreciation to my committee members: Drs. Ioan Negulescu, Benjamin Legendre, Peter Rein, Donal Day, Armando Corripio, for comments, suggestions and critical review of this manuscript. I thank, Dr. Negulescu for introducing me to exciting field of polymers. -
Aconitic Acid
Target/Host: Aspergillus pseudoterreus for Organic Acids: 3-Hydroxypropionic and Aconitic Acid Jon Magnuson, Nathan Hillson, Phil Laible, John Gladden, Gregg Beckham BETO Peer Review 2019 Technology Session Review Area: Agile BioFoundry March 7, 2019 Goal Statement • Goal: Enable biorefineries to achieve 50% reductions in time to bioprocess scale-up as compared to the current average of around 10 years by establishing a distributed Agile BioFoundry that will productionize synthetic biology. • Outcomes: 10X improvement in Design-Build-Test- Learn cycle efficiency, new host organisms, new IP and manufacturing technologies effectively translated to U.S. industry ensuring market transformation. • Relevance: Public infrastructure investment that increases U.S. industrial competitiveness and enables new opportunities for private sector growth and jobs. 2 | © 2016-2019 Agile BioFoundry Target-Host pair Goal Statement Goal: – Validate the Foundry concept by testing the ABF DBTL infrastructure using complementary T-H pairs – Demonstrate improved efficiency of DBTL cycle and Foundry concept via target-host pair work with Aspergillus pseudoterreus – Target 1: 3-hydroxypropionic acid – Target 2: aconitic acid Outcome: – Increased strain performance to novel targets via DBTL – Use this system to demonstrable improvements to DBTL cycle times – Further development of a robust industrially relevant bacterial host – Developing highly relevant datasets for Learn team Relevance: – Benchmark DBTL cycle performance and improvement across scales with real-world substrates and process configurations – Information from DBTL and Integration efforts will be critical to predictive scale-up and scale-down 3 | © 2016-2019 Agile BioFoundry Quad Chart Overview: T/H A. pseudoterreus Barriers Timeline • Technical: • Start: October 1, 2016 – Ct‐D. Advanced Bioprocess Development • End: September 30, 2019 – Ct‐L. -
(ACO2) Deficiency
RESEARCH ARTICLE Plasma metabolomics reveals a diagnostic metabolic fingerprint for mitochondrial aconitase (ACO2) deficiency Lucia Abela1,2,3, Ronen Spiegel4, Lisa M. Crowther1,2,3, Andrea Klein1¤a, Katharina Steindl3,5, Sorina Mihaela Papuc3,5, Pascal Joset3,5, Yoav Zehavi4, Anita Rauch3,5, Barbara Plecko1,2,3, Thomas Luke Simmons1,2,3¤b* 1 Division of Child Neurology, University Children's Hospital Zurich, Zurich, Switzerland, 2 Children's Research Centre, University Children's Hospital Zurich, Zurich, Switzerland, 3 Radiz±Rare Disease Initiative a1111111111 Zurich, Clinical Research Priority Program for Rare Diseases, University of Zurich, Zurich, Switzerland, a1111111111 4 Department of Pediatrics B, Emek Medical Center, Afula, Rappaport Faculty of Medicine, Technion, Israel, a1111111111 5 Institute of Medical Genetics, University of Zurich, Schlieren, Switzerland a1111111111 a1111111111 ¤a Current address: Pediatric Neurology, University of Basel Children's Hospital, Basel, Switzerland ¤b Current address: Evolva AG, Reinach, Switzerland * [email protected] OPEN ACCESS Abstract Citation: Abela L, Spiegel R, Crowther LM, Klein A, Mitochondrial respiratory chain dysfunction has been identified in a number of neurodegen- Steindl K, Papuc SM, et al. (2017) Plasma metabolomics reveals a diagnostic metabolic erative disorders. Infantile cerebellar-retinal degeneration associated with mutations in the fingerprint for mitochondrial aconitase (ACO2) mitochondrial aconitase 2 gene (ACO2) has been recently described as a neurodegenera- deficiency. PLoS ONE 12(5): e0176363. https://doi. tive disease of autosomal recessive inheritance. To date there is no biomarker for ACO2 org/10.1371/journal.pone.0176363 deficiency and diagnosis relies on genetic analysis. Here we report global metabolic profiling Editor: Petras Dzeja, Mayo Clinic Rochester, in eight patients with ACO2 deficiency. -
Interpretive Guide
INTERPRETIVE GUIDE Contents INTRODUCTION .........................................................................1 NUTREVAL BIOMARKERS ...........................................................5 Metabolic Analysis Markers ....................................................5 Malabsorption and Dysbiosis Markers .....................................5 Cellular Energy & Mitochondrial Metabolites ..........................6 Neurotransmitter Metabolites ...............................................8 Vitamin Markers ....................................................................9 Toxin & Detoxification Markers ..............................................9 Amino Acids ..........................................................................10 Essential and Metabolic Fatty Acids .........................................13 Cardiovascular Risk ................................................................15 Oxidative Stress Markers ........................................................16 Elemental Markers ................................................................17 Toxic Elements .......................................................................18 INTERPRETATION-AT-A-GLANCE .................................................19 REFERENCES .............................................................................23 INTRODUCTION A shortage of any nutrient can lead to biochemical NutrEval profile evaluates several important biochemical disturbances that affect healthy cellular and tissue pathways to help determine nutrient -
Photosynthetic Productivity: Can Plants Do Better?
3 Photosynthetic Productivity: Can Plants do Better? John B. Skillman1, Kevin L. Griffin2, Sonya Earll1 and Mitsuru Kusama1 1Department of Biology, California State University, San Bernardino, California 2Lamont-Doherty Earth Observatory, Columbia University, New York, New York USA 1. Introduction By the time you finish this paragraph you will be a changed person. Change, of course, takes a variety of forms, from eroding mountains and melting snowflakes to the major changes we experience in our own lives - birth, growth, reproduction, and death. Less tangible, but changes nonetheless, are the small shifts in perspective that occur as we go through our days - new ideas, new feelings, and new understandings. But, as the Second Law of Thermodynamics reminds us, these varied and seemingly unrelated expressions of change do, in fact have a common source. All change arises from the decay of order - an increase in entropy. Sometimes the increased disarray that defines change is obvious, as when a crystalline cube of ice turns into a higgledy-piggledy puddle of water. Other times, the increased disorder is less obvious. Indeed, in living systems, change often seems to be associated with an increase in order. The gradual recovery of a lush and materially diverse living forest in the years following a catastrophic fire would seem to represent a net increase in order. The sequential nature of biological development, from zygote to adult, or from acorn to ancient oak, would seem to represent a net increase in order. The regulated changes in neuronal connectivity and brain architecture that occurs as the mind grasps new insights would seem to represent a net increase in order. -
Sigma Sugars and Carbohydrates
Sigma Sugars and Carbohydrates Library Listing – 614 spectra This library represents a material-specific subset of the larger Sigma Biochemical Condensed Phase Library relating to sugars and carbohydrates found in the Sigma Biochemicals and Reagents catalog. Spectra acquired by Sigma-Aldrich Co. which were examined and processed at Thermo Fisher Scientific. The spectra include compound name, molecular formula, CAS (Chemical Abstract Service) registry number, and Sigma catalog number. Sigma Sugars and Carbohydrates Index Compound Name Index Compound Name 255 (+/-)-Epi-inosose-2 475 2,3,4,6-Tetra-O-methyl-D-glucopyranose 468 1,2,3,4-Tetra-O-acetyl-6- 487 2,3,5-Tri-O-benzoyl-1-O-p-nitrobenzoyl diphenylphosphoryl-b-D-manopyranose D-ribofuranoside 471 1,2,3,4-Tetra-O-acetyl-b-D- 490 2,3,5-Tri-O-benzyl-1-O-p-nitrobenzoyl- glucopyranose D-arabinofuranoside 472 1,2,3,5-Tetra-O-acetyl-b-D-ribofuranose 488 2,3,5-Tri-O-benzyl-b-D-arabinofuranose 473 1,2,3,5-Tetra-O-benzoyl-a-D- 489 2,3,5-Tri-O-benzyl-b-L-arabinofuranose xylofuranose 107 2,3-Dehydro-2-deoxy-N- 258 1,2-O-Isopropylidene-3-O-benzyl-rac- acetylneuraminic acid glycerol 142 2,3-Diphospho-D-glyceric acid, 261 1,2-O-Isopropylidene-5-O-p-tosyl-a-D- penta(CHA) salt xylofuranose 143 2,3-Diphospho-D-glyceric acid, 259 1,2-O-Isopropylidene-D-glucofuranose pentasodium salt 262 1,2-O-Isopropylidene-D-xylofuranose 144 2,3-Diphospho-D-glyceric acid, tris salt 135 1,2:3,4-Di-O-isopropylidene-D- 260 2,3-O-Isopropylidene-b-D- galactopyranose ribofuranosylamine, tosylate salt 141 1,2:3,5-Di-O-isopropylidene-D- -
Research Article a Urine Metabonomics Study of Rat Bladder Cancer by Combining Gas Chromatography-Mass Spectrometry with Random Forest Algorithm
Hindawi International Journal of Analytical Chemistry Volume 2020, Article ID 8839215, 9 pages https://doi.org/10.1155/2020/8839215 Research Article A Urine Metabonomics Study of Rat Bladder Cancer by Combining Gas Chromatography-Mass Spectrometry with Random Forest Algorithm MengchanFang,1 FanLiu,2 LinglingHuang,1 LiqingWu,3 LanGuo ,1,2 andYiqunWan 1,2 1College of Chemistry, Nanchang University, Nanchang 330031, China 2Jiangxi Province Key Laboratory of Modern Analytical Science, Nanchang University, Nanchang 330031, China 3Department of Pathology, 3rd Affiliated Hospital of Nanchang University, Nanchang 330008, China Correspondence should be addressed to Lan Guo; [email protected] and Yiqun Wan; [email protected] Received 15 June 2020; Revised 6 September 2020; Accepted 9 September 2020; Published 21 September 2020 Academic Editor: David M. Lubman Copyright © 2020 Mengchan Fang et al. .is is an open access article distributed under the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. A urine metabolomics study based on gas chromatography-mass spectrometry (GC-MS) and multivariate statistical analysis was applied to distinguish rat bladder cancer. Urine samples with different stages were collected from animal models, i.e., the early stage, medium stage, and advanced stage of the bladder cancer model group and healthy group. After resolving urea with urease, the urine samples were extracted with methanol and, then, derived with N, O-Bis(trimethylsilyl) trifluoroacetamide and tri- methylchlorosilane (BSTFA + TMCS, 99 :1, v/v), before analyzed by GC-MS. .ree classification models, i.e., healthy control vs. early- and middle-stage groups, healthy control vs. -
The Role of Glycerol and Its Derivatives in the Biochemistry of Living Organisms, and Their Prebiotic Origin and Significance in the Evolution of Life
catalysts Review The Role of Glycerol and Its Derivatives in the Biochemistry of Living Organisms, and Their Prebiotic Origin and Significance in the Evolution of Life Maheen Gull * and Matthew A. Pasek School of Geosciences, University of South Florida, 4202 E Fowler Ave., NES 204, Tampa, FL 33620, USA; [email protected] * Correspondence: [email protected]; Tel.: +1-813-974-8979 Abstract: The emergence and evolution of prebiotic biomolecules on the early Earth remain a question that is considered crucial to understanding the chemistry of the origin of life. Amongst prebiotic molecules, glycerol is significant due to its ubiquity in biochemistry. In this review, we discuss the significance of glycerol and its various derivatives in biochemistry, their plausible roles in the origin and evolution of early cell membranes, and significance in the biochemistry of extremophiles, followed by their prebiotic origin on the early Earth and associated catalytic processes that led to the origin of these compounds. We also discuss various scenarios for the prebiotic syntheses of glycerol and its derivates and evaluate these to determine their relevance to early Earth biochemistry and geochemistry, and recapitulate the utilization of various minerals (including clays), condensation agents, and solvents that could have led to the successful prebiotic genesis of these biomolecules. Furthermore, important prebiotic events such as meteoritic delivery and prebiotic synthesis reactions under astrophysical conditions are also discussed. Finally, we have also highlighted some novel features of glycerol, including glycerol nucleic acid (GNA), in the origin and evolution of the life. Citation: Gull, M.; Pasek, M.A. The Keywords: glycerol; phosphorylation; catalysis; prebiotic syntheses; origin of life; evolution of cell Role of Glycerol and Its Derivatives in membranes; deep eutectic solvents; extremophiles; glycerol biochemistry; phospholipids; early Earth the Biochemistry of Living Organisms, and Their Prebiotic Origin and Significance in the Evolution of Life. -
Isolation and Identification of (-)-Methylcitric Acid and 2-Methyl
NOTE Agr. Biol. Chem., 38 (12), 2565•`2566, 1974 isocitric acids as calcium salt.*2 The filtrate was diluted and then adjusted to pH 1.8 with 4N sulfuric acid. Isolation and Identification of (-)- After removal of calcium sulfate and thorough concen Methylcitric Acid and 2-Methyl- tration of the filtrate, the residual sirup was extracted repeatedly with ethyl acetate. The combined extract cis-aconitic Acid from the Culture was evaporated to a sirup, which was then heated until of Candida lipolytica foaming ceased at 100•Ž under reduced pressure in order to dehydrate thoroughly. The residual sirup (ca. 80g) was partitioned between 400ml of ethyl Takeshi TABUCHI, Nobufusa SERIZAWA* acetate and 200ml of water, fifteen transfers counter and Sadahiro OHMOMO current distribution being conducted. After each fraction had been checked by paper chromatographic Faculty of Agriculture, Tokyo University of Education, analysis using ethyl acetate-acetic acid-water (50:12: Komaba, Meguro-ku, Tokyo 10) as a solvent-mixture and bromphenol blue as a Received July 12, 1974 detecting reagent, ethyl acetate phases of fractions No. 1 and No. 2 containing an unknown acid, A Previously, we found that from a mixture of n- (Rf 0.92), were collected and evaporated to dryness. The residue (13g) was suspended in water and neutraliz alkanes a fluoroacetate-tolerant mutant, No. R-2, ed with 0.4N barium hydroxide. By concentrating the derived from Candida lipolytica IFO 1659 produced an solution, a precipitate of barium salt appeared. The appreciable amount of threo-Ds-2-methylisocitric acid which competitively inhibited isocitrate dehydro precipitate collected by filtration was dissolved in 1N hydrochloric acid and extracted with ether. -
PATHWAY of SERINE FORMATION from CARBOHYDRATE in RAT LIVER* by AKIRA Ichiharat and DAVID M
Proceedings of the NATIONAL ACADEMY OF SCIENCES Volume 41 Number 9 September 15, 1955 PATHWAY OF SERINE FORMATION FROM CARBOHYDRATE IN RAT LIVER* BY AKIRA ICHIHARAt AND DAVID M. GREENBERG DEPARTMENT OF PHYSIOLOGICAL CHEMISTRY, UNIVERSITY OF CALIFORNIA SCHOOL OF MEDICINE, BERKELEY Communicated by H. A. Barker, June 3, 1955 There are a number of reports on the formation of serine from glucose in animal tissues,1-3 but experimental evidence for the steps in the main pathway of serine formation has not been available up to now. Sallach4 has recently reported the presence of a transaminase between 3-hydroxypyruvic acid and alanine and has presented a possible pathway of serine formation from D-glyceric acid through 3- hydroxypyruvic acid. This paper reports the formation of serine from glucose, D-glyceric acid, 3-phosphoglyceric acid, and 3-phosphohydroxypyruvic acid by a rat-liver enzyme system and presents an alternative pathway of serine formation. EXPERIMENTAL Preparation of Enzyme System.-The livers from male rats, weighing 250-300 gm., were homogenized with 2 volumes of 0.1 M phosphate buffer (pH 7.4) in a Waring Blendor for 40 seconds. The homogenate was then centrifuged at 600 X g for 10 minutes and the supernatant fluid recentrifuged at 105,400 X g for 30 minutes in the Spinco preparative ultracentrifuge. The supernatant fluid from this was fractionated with saturated (NH4)2SO4, and the enzyme activity was found in the fraction precipitating between 33-66 per cent saturation. This was dissolved in 0.1 M phosphate buffer and dialyzed against 0.03 M phosphate buffer, both at pH 7.4, for 6 hours.