Use of Dot Blots Analysis in the Separation of Anti-HIV Antibodies in Animals
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Protein Blotting Guide
Electrophoresis and Blotting Protein Blotting Guide BEGIN Protein Blotting Guide Theory and Products Part 1 Theory and Products 5 Chapter 5 Detection and Imaging 29 Total Protein Detection 31 Transfer Buffer Formulations 58 5 Chapter 1 Overview of Protein Blotting Anionic Dyes 31 Towbin Buffer 58 Towbin Buffer with SDS 58 Transfer 6 Fluorescent Protein Stains 31 Stain-Free Technology 32 Bjerrum Schafer-Nielsen Buffer 58 Detection 6 Colloidal Gold 32 Bjerrum Schafer-Nielsen Buffer with SDS 58 CAPS Buffer 58 General Considerations and Workflow 6 Immunodetection 32 Dunn Carbonate Buffer 58 Immunodetection Workflow 33 0.7% Acetic Acid 58 Chapter 2 Methods and Instrumentation 9 Blocking 33 Protein Blotting Methods 10 Antibody Incubations 33 Detection Buffer Formulations 58 Electrophoretic Transfer 10 Washes 33 General Detection Buffers 58 Tank Blotting 10 Antibody Selection and Dilution 34 Total Protein Staining Buffers and Solutions 59 Semi-Dry Blotting 11 Primary Antibodies 34 Substrate Buffers and Solutions 60 Microfiltration (Dot Blotting) Species-Specific Secondary Antibodies 34 Stripping Buffer 60 Antibody-Specific Ligands 34 Blotting Systems and Power Supplies 12 Detection Methods 35 Tank Blotting Cells 12 Colorimetric Detection 36 Part 3 Troubleshooting 63 Mini Trans-Blot® Cell and Criterion™ Blotter 12 Premixed and Individual Colorimetric Substrates 38 Transfer 64 Trans-Blot® Cell 12 Immun-Blot® Assay Kits 38 Electrophoretic Transfer 64 Trans-Blot® Plus Cell 13 Immun-Blot Amplified AP Kit 38 Microfiltration 65 Semi-Dry Blotting Cells -
Snail1 Controls Telomere Integrity and Transcription and Telomerase Expression
Department of Experimental and Health Sciences Faculty of Health and Life Sciences Universitat Pompeu Fabra Doctoral Thesis 2017 Snail1 controls telomere integrity and transcription and telomerase expression Dissertation presented by Núria Gonzàlez Busqué For the degree of Doctor in Biomedical Research Work carried out under the supervision of Dr. Antonio García de Herreros and Sílvia Canudas Puig in the Epithelial to Mesenchymal Transition and Tumor Progression Group, the Cancer Research Program, Institut Hospital del Mar d’Investigacions Mèdiques (IMIM) Barcelona 2017 Dr. Sílvia Canudas Puig Dr. Antonio García de Herreros Núria Gonzàlez Busqué (Thesis co-director) (Thesis co-director) (PhD Student) Temps, Només un moment, D’abraçar la gent És curt però és intens És qüestió de temps. Temps, D’ensenyar les dents De cantar el que sents D’encendre el present Val molt més que l’or que tens TOTHOM HO SAP A la meva mare A la maternitat, per haver-me revolucionat la vida iv AKNOWLEDGMENTS Mare meva!!! Realitzar i escriure aquesta tesi ha sigut un gran repte per mi….Tota la meva vida he tingut clar que volia ser “mare-metge”, i ho sóc! Però també tenia molta curiositat per “investigar”: de petita tenia un microscopi que utilitzava molt sovint per mirar la diversitat de coses que us pogueu imaginar, i també m’encantava el “cheminova” (els de la meva generació segur que sabeu quin joc és!). Així que poder estar aquests anys fent recerca bàsica i manufacturant la tesi amb les meves pròpies mans ha sigut moltes coses, una de les quals és complir un somni que tenia de petita. -
DIG Application Manual for Filter Hybridization.Indb
778/779 DIG Hyb ManualCover_1AK 30.07.2008 14:32 Uhr Seite 3 C M Y CM MY CY CMY K Probedruck DIG_Filter_ManualCover_RZ 01.08.2008 15:00 Uhr Seite 4 C M Y CM MY CY CMY K Intended use Our preparations are exclusively intended to be used in life science research applications.* They must not be used in or on human beings since they were neither tested nor intended for such utilization. Preparations with hazardous substances Our preparations may represent hazardous substances to work with. The dangers which, to our knowledge, are involved in the handling of these preparations (e.g., harmful, irritant, toxic, etc.), are separately mentioned on the labels of the packages or on the pack inserts; if for certain preparations such danger references are missing, this should not lead to the conclusion that the corresponding preparation is harmless. All preparations should only be handled by trained personnel. Preparations of human origin The material has been prepared exclusively from blood that was tested for Hbs antigen and for the presence of antibodies to the HIV-1, HIV-2, HCV and found to be negative. Nevertheless, since no testing method can offer complete assurance regarding the absence of infectious agents, products of human origin should be handled in a manner as recommended for any potentially infectious human serum or blood specimen. Liability The user is responsible for the correct handling of the products and must follow the instructions of the pack insert and warnings on the label. Roche Diagnostics shall not assume any liability for damages resulting from wrong handling of such products. -
Techniques Used to Test Native DNA Downloaded from by Guest on 29 September 2021
CE UPDATE —MOLECULAR BIOLOGY II James Wisecarver, MD, PhD Techniques Used To Test Native DNA Downloaded from https://academic.oup.com/labmed/article/28/2/121/2503736 by guest on 29 September 2021 The first article of this series described the key structural features of DNA and how it is extracted ABSTRACT Several techniques commonly are used to test from cells for study. After a DNA sequence has native high-molecular-weight DNA obtained from cells and been extracted from cells and purified, the genetic tissues, including the Southern blot, dot and slot blot proce information contained within the sequence can be dures, and in situ hybridization of tissue sections with examined through a variety of techniques. This article discusses the techniques commonly oligonucleotide probes. These techniques work well when used to test native high-molecular-weight DNA there is an adequate amount of fresh tissue or cells available to obtained from cells and tissues, including provide a source for the intact DNA. These techniques involve Southern blot, dot blot, and in situ hybridization. separating, or denaturing, the double-stranded DNA into individual strands, and then applying a marked nucleotide Southern Blot The technique known as Southern blot analysis is probe and allowing it to hybridize to a complementary DNA used widely for analyzing the size of certain DNA sequence that may be present. These techniques are used to fragments. The sequence of interest is prepared determine whether a particular DNA sequence is present. by digesting intact DNA collected from a patient's This is the second article in a three-part series on DNA. -
Reviewers' Checklists
Canada and United States Bilateral on Agricultural Biotechnology Reviewers' Checklists The Canadian Food Inspection Agency, Health Canada, and the United States Department of Agriculture's Animal and Plant Health Inspection Service, have prepared a series of checklists to be used by reviewers in the assessment process for the following six analytical techniques: Southern blot, Western blot, Northern blot, polymerase chain reaction, RNA dot blot, enzyme- linked immunosorbent assay (ELISA), and enzyme assays. The agencies are sharing these reviewers' checklists with potential applicants to provide guidance on the preparation of quality data. Checklist for Northern Blot Data YES NO Does the Northern blot have a figure number and title? Are lanes labeled on the blot? Does the figure legend describe each lane of the blot, including a description of the following for the RNA that was loaded: i. What type of material was loaded (eg. total purified RNA, poly-A RNA, crude prep, total plant extract)? ii. Source of the material loaded (eg. transformation event, tissue, developmental stage, any prior treatments to induce gene expression, etc.) iii. Quantity of material loaded in each lane? Does the text or figure legend describe how RNA was extracted prior to electrophoresis? Does the blot have appropriate positive and negative control lanes (positive control might demonstrate hybridization of the probe with itself; negative control might be the unmodified parental plant line or variety)? Is the gel system and Northern hybridization protocol described -
Low-Resolution Genome Map of the Malaria Mosquito Anopheles Gambiae
Proc. Natl. Acad. Sci. USA Vol. 88, pp. 11187-11191, December 1991 Biochemistry Low-resolution genome map of the malaria mosquito Anopheles gambiae (PCR/microampfflcation/in situ hybridization/dot blot/polytene chromosomes) LIANGBIAO ZHENG*, ROBERT D. C. SAUNDERSt, DANIELA FORTINIt, ALESSANDRA DELLA TORREO, MARIO COLUZZIf, DAVID M. GLOVERt, AND FOTIs C. KAFATOS*§¶ *Biological Laboratories, Harvard University, 16 Divinity Avenue, Cambridge, MA 02138; tDepartment of Biochemistry, University of Dundee, DD1 4HN Dundee, United Kingdom; tIstituto di Parassitologia, Universiti di Roma "La Sapienza," Piazzale Aldo Moro 5, 00185 Rome, Italy; and Institute of Molecular Biology and Biotechnology, and Department of Biology, University of Crete, P.O. Box 1527, 711 10 Heraklion, Crete, Greece Contributed by Fotis C. Kafatos, October 2, 1991 ABSTRACT We have microdissected divisions of the MATERIALS AND METHODS Anophelks gambiae polytene chromosomes, digested the DNAs with a restriction enzyme, and PCR-ampilfled the DNA frag- Microdisecion and PCR Amplification. Polytene chromo- ments to generate a set of pooled probes, each corresponding somes from nurse cells of half-gravid females were prepared to -2% of the mosquito genome. These divisional probes were from An. gambiae s.s. (karyotype: Xag; 2La; 2R+; 3L+; shown to have high complexity. Except for those derived from 3R+; M.C., unpublished results) and were microdissected near the centromeres, they hybridize specilcaly with their into 54 divisions or subdivisions (see Table 1). Each dissected chromosomal sites of origin. Thus, they can be used to map chromosomal segment was digested with proteinase K and cloned DNAs by a dot blot procedure, which is much more the DNA was phenol/chloroform extracted, digested with convenient than in situ hybridization to polytene chromosomes. -
Technical Guide for Non-Radioactive Nucleic Acid Labeling and Detection
Technical GuideforNon-Radioactive Technical Nucleic AcidLabelingandDetection www.kpl.com DETECTOR™ SYSTEMS Table of Contents Table of Contents Page Chapter 1 – Overview of Non-Radioactive Labeling and Detection 3 Chapter 2 – Nucleic Acid Probe Labeling 9 Chapter 3 – Southern Blotting 23 Chapter 4 – Northern Blotting 33 Chapter 5 – In-Situ Hybridization 41 Chapter 6 – Troubleshooting Guide 55 Chapter 7 – Appendix 65 Miscellaneous Applications 65 Buffer Recipes 68 Related Products 69 1 800-638-3167 • KPL, Inc. • 301-948-7755 Preface Detector™ is a comprehensive line of kits and reagents for non-radioactive labeling and detection of nucleic acids. These systems have been developed to eliminate the need for radioisotopes without compromise to the high sensitivity associated with their use. Additionally, Detector products address the background issues that have been typical of past chemiluminescent methods through the use of unique hybridization and blocking solutions and well-defined assay conditions. The result is an optimized approach to nucleic acid blotting applications that is fast, efficient and reliable, producing publication quality blots with superior signal:noise ratio. Included in the Detector product line are kits for: • Biotin labeling of DNA and RNA probes – Detector Random Primer DNA Biotinylation Kit – Detector PCR DNA Biotinylation Kit – Detector RNA in vitro Transcription Biotinylation Kit • Southern Blotting – Detector AP Chemiluminescent Blotting Kit – Detector HRP Chemiluminescent Blotting Kit • Northern Blotting – Detector AP Chemiluminescent Blotting Kit • In situ Hybridization – DNADetector™ Chromogenic in situ Hybridization Kit – DNADetector Fluorescent in situ Hybridization Kit This Technical Guide to Non-Radioactive Nucleic Acid Labeling and Detection is designed as a primer for those laboratories evaluating chemiluminescent detection for the first time; it serves as a resource for comparing techniques, selecting the appropriate products and conducting experiments. -
Detection of Genomic Uracil Patterns
International Journal of Molecular Sciences Review Detection of Genomic Uracil Patterns Angéla Békési 1,2,*, Eszter Holub 1,2, Hajnalka Laura Pálinkás 1,2 and Beáta G. Vértessy 1,2,* 1 Department of Applied Biotechnology & Food Sciences, Budapest University of Technology and Economics, H-1111 Budapest, Hungary; [email protected] (E.H.); [email protected] (H.L.P.) 2 Genome Metabolism Research Group, Institute of Enzymology, Research Centre for Natural Sciences, Eötvös Lóránd Research Network, H-1117 Budapest, Hungary * Correspondence: [email protected] (A.B.); [email protected] (B.G.V.) Abstract: The appearance of uracil in the deoxyuridine moiety of DNA is among the most frequently occurring genomic modifications. Three different routes can result in genomic uracil, two of which do not require specific enzymes: spontaneous cytosine deamination due to the inherent chemical re- activity of living cells, and thymine-replacing incorporation upon nucleotide pool imbalances. There is also an enzymatic pathway of cytosine deamination with multiple DNA (cytosine) deaminases involved in this process. In order to describe potential roles of genomic uracil, it is of key importance to utilize efficient uracil-DNA detection methods. In this review, we provide a comprehensive and critical assessment of currently available uracil detection methods with special focus on genome- wide mapping solutions. Recent developments in PCR-based and in situ detection as well as the quantitation of genomic uracil are also discussed. Keywords: uracil-DNA; dot blot; in situ detection; PCR-based U-DNA detection; genome-wide uracil mapping Citation: Békési, A.; Holub, E.; 1. Introduction Pálinkás, H.L.; Vértessy, B.G. -
Molecular Biology: Blotting / Hybridization Techniques
Molecular Biology: Blotting / Hybridization techniques Molecular Biology: Blotting / Hybridization techniques Author: Dr Henriëtte van Heerden Licensed under a Creative Commons Attribution license. TABLE OF CONTENTS INTRODUCTION ........................................................................................................................................... 2 BLOTTING .................................................................................................................................................... 2 Southern blotting ...................................................................................................................................... 2 Northern blotting....................................................................................................................................... 3 Dot-blotting: .............................................................................................................................................. 4 Western blotting: ...................................................................................................................................... 4 FIXATION OF NUCLEIC ACIDS ONTO MEMBRANES .............................................................................. 4 LABELING METHODS ................................................................................................................................. 4 LABELING OF DNA PROBES ....................................................................................................................