Induction of Apoptosis by Enediyne Antibiotic Calicheamicin 0II

Total Page:16

File Type:pdf, Size:1020Kb

Induction of Apoptosis by Enediyne Antibiotic Calicheamicin 0II Oncogene (2003) 22, 9107–9120 & 2003 Nature Publishing Group All rights reserved 0950-9232/03 $25.00 www.nature.com/onc ORIGINAL PAPERS Induction of apoptosis by enediyne antibiotic calicheamicin 0II proceeds through a caspase-mediated mitochondrial amplification loop in an entirely Bax-dependent manner Aram Prokop1,4, Wolf Wrasidlo2,4, Holger Lode2, Ralf Herold1, Florian Lang3,5,Gu¨ nter Henze1, Bernd Do¨ rken3, Thomas Wieder3,5,6 and Peter T Daniel*,3,6 1Department of Pediatric Oncology/Hematology, University Medical Center Charite´, Humboldt University of Berlin, Berlin 13353, Germany; 2Department of General Pediatrics, University Medical Center Charite´, Humboldt University of Berlin, Berlin 13353, Germany; 3Department of Hematology, Oncology and Tumor Immunology, University Medical Center Charite´, Humboldt University of Berlin, Berlin 13125, Germany Calicheamicin 0II is a member of the enediyne class of Keywords: calicheamicin; apoptosis; caspase-3; Bax; antitumor antibiotics that bind to DNA and induce Bcl-2; cytochrome c; mitochondria; BJAB; Jurkat; apoptosis. These compounds differ, however, from con- HCT116 ventional anticancer drugs as they bind in a sequence- specific manner noncovalently to DNA and cause sequence-selective oxidation of deoxyriboses and bending of the DNA helix. Calicheamicin is clinically employed as Introduction immunoconjugate to antibodies directed against, for example, CD33 in the case of gemtuzumab ozogamicin. In contrast to necrosis, apoptosis is a morphologically Here, we show by the use of the unconjugated drug that and biochemically defined form of cell death that plays a calicheamicin-induced apoptosis is independent from role under different physiological conditions, such as death-receptor/FADD-mediated signals. Moreover, cali- cell turnover, the immune response or embryonic cheamicin triggers apoptosis in a p53-independent manner development. In addition, the apoptotic program may as shown by the use of p53 knockout cells. Cell death be triggered by various, unphysiological death stimuli, proceeds via activation of mitochondrial permeability for example, ionizing radiation (Belka et al., 2000, transition, cytochrome c release and activation of 2001), chemotherapeutic anticancer drugs (Engels et al., caspase-9 and -3. The overexpression of Bcl-xL or Bcl-2 2000; Wieder et al., 2001a) and by natural compounds strongly inhibited calicheamicin-induced apoptosis. (Wieder et al., 2001b). So far, three major pathways of Knockout of Bax abrogated cell death after calicheamicin apoptotic cell death have been defined: (i) the death treatment. Thus, the activation of mitochondria and receptor-mediated signalling cascade (Daniel et al., execution of cell death occur through a fully Bax- 2001), (ii) the mitochondrial pathway involving the dependent mechanism. Interestingly, caspase inhibition apoptosome (Daniel, 2000; Rudner et al., 2001), and (iii) by the pancaspase-inhibitor zVAD-fmk interfered with the endoplasmic reticulum-dependent stress response mitochondrial activation by calicheamicin. This places (Belka and Budach, 2002; Rudner et al., 2002). caspase activation upstream of the mitochondria and In previous studies, we demonstrated that inactivation indicates that calicheamicin-triggered apoptosis is en- of apoptotic pathways results in both apoptotic hanced through death receptor-independent activation of resistance in vitro and clinical resistance to anticancer the caspase cascade, that is, an amplification loop that is treatment (Mrozek et al., 2003; Gu¨ ner et al., 2003; required for full activation of the mitochondrial pathway. Sturm et al., 2001; Sturm et al., 2003). One of the main Oncogene (2003) 22, 9107–9120. doi:10.1038/sj.onc.1207196 regulatory steps of apoptotic cell death is controlled by the ratio of anti- and proapoptotic members of the Bcl-2 family of proteins function as a rheostat and determine the susceptibility to apoptosis (for reviews, see, Daniel, 2000; Daniel et al., 2003). For example, the over- expression of antiapoptotic Bcl-2 family members that *Correspondence: PT Daniel, Molecular Hematology and Oncology, University Medical Center Charite´ , Campus Berlin-Buch, Humboldt can tilt the rheostat towards survival, thereby confering University of Berlin, Berlin 13125, Germany drug resistance, at least in some cellular tumor model 4These authors contributed equally to the present study systems (Rudner et al., 2001; Belka and Budach, 2002; 5Current address: Department of Physiology I, Eberhard-Karls Radetzki et al., 2002; von Haefen et al., 2003). On the University Tubingen, Tu¨ bingen 72076, Germany 6These authors share senior authorship other hand, forced expression of proapoptotic Bax or Received 9 May 2003; revised 28 August 2003; accepted 10 September Bak or, for example, the BH3-only protein Nbk/Bik, is 2003 sufficient to increase the sensitivity of malignant cells to Calicheamicin activates mitochondria via caspases and Bax A Prokop et al 9108 apoptosis and to overcome drug resistance (Hemmati Results et al., 2002; Radetzki et al., 2002; von Haefen et al., 2002). Interestingly, these in vitro data are in line with Dose-dependent induction of apoptosis by calicheamicin signalling analyses performed in primary carcinoma, WII lymphoma and leukemia cells. Upon activation of the mitochondria, cell death proceeds via the formation of Depending on their concentration, many cytostatic the mitochondrial apoptosome and initiation of the substances cause necrotic, membrane damaging as et al caspase cascade. Consequently, loss of proapoptotic Bax well as apoptotic cell death (Wieder ., 1998; et al results in the failure of cancer cells to activate caspase-3 Friedrich ., 2001). We therefore determined the in vivo (Prokop et al., 2000). unspecific, cytotoxic effect of calicheamicin WII (further Calicheamicin is a naturally occurring hydrophobic designated as calicheamicin) in BJAB cells by the enediyne antibiotic that was isolated in Micromonospora determination of LDH release into the culture echinospora calichensis (Maiese et al., 1989). Calichea- medium. As shown in Figure 1a, calicheamicin did micin and other naturally occurring enediynes exhibit not significantly reduce viability of BJAB cells after significant activity against Gram-positive and -negative 24 h of incubation at concentrations p100 pM, thereby indicating that a necrosis-like mechanism, for bacteria. In addition, calicheamicin exerts a potent example, through direct membrane damage, does not antitumor activity and has been shown to induce apoptotic cell death in the picomolar range. Calichea- play a role for its death-inducing potency. After 48 h, however, 25% of the cells showed LDH release, which micin binds to the minor groove of the DNA helix, can be attributed to secondary necrosis that follows preferentially to the 30 ends of oligopurine tracts, and apoptosis in vitro. Calicheamicin potently induced DNA causes sequence-selective oxidation of deoxyribose and fragmentation in up to 60% of the cells. Apoptosis bending of the DNA helix by an induced-fit mechanism induction was concentration-dependent with a half- of DNA target recognition (Salzberg and Dedon, 2000). maximum concentration of 10 pM (Figure 1b), and In addition, calicheamicin and other naturally occurring DNA fragmentation was already observed after 24 h enediyne antibiotics, including esperamicin, neocarci- (Figure 1c). The percentage of cells showing loss of nostatin, kedarcidin and dynemicin constitute a unique membrane integrity at 48 h (Figure 1a) corresponds well class of reactive compounds, which can undergo aromatization to produce biradicals. Interestingly, to the number of cells showing DNA fragmentation at 24 h (Figure 1c). Thus, DNA fragmentation precedes phosphodiester bond breakage of DNA was shown to membrane damage induced in calicheamicin-induced be dispensable for the apoptosis-inducing activity (Hiatt et al., 1994). Furthermore, prevention of apoptosis was cells. This indicates that calicheamicin induces apoptotic cell death in BJAB cells and this is followed by observed in analogs that were electronically stabilized to secondary necrosis. impair aromatic rearrangements and generation of biradicals (Hiatt et al., 1994). Thus, apart from enforcing a conformational change in the DNA Calicheamicin-induced apoptosis occurs independently of structure and the induction of DNA strand breaks, CD95/Fas signalling additional signalling events appear to be critically involved in the activation of apoptosis by calicheamicin To investigate the involvement of CD95/Fas or other and its analogs. death receptor systems in calicheamicin-induced cell In clinical anticancer therapy, the enediyne calichea- death, we employed BJAB cells overexpressing a micin is currently successfully employed as an immuno- dominant-negative FADD (FADD-dn) mutant. Both conjugate to antibodies serving as vehicles for the mock and FADD-dn transfectants express endogenous targeting of calicheamicin to tumor cells (Linenberger FADD (27 kDa), while the FADD-dn transfectants also et al., 2001; van der Velden et al., 2001). So far, the show a lower band representing the truncated FADD- mechanisms of apoptosis induction by these compounds dn (Wieder et al., 2001a). To provide a positive control remains enigmatic. Paradoxically, the induction of for the biological activity of the FADD-dn, we apoptotic cell death in PC12 cells by neocarcinostatin functionally characterized the FADD-dn-overexpressing was shown to be potentiated in cells overexpressing the BJAB cells. Vector-transfected
Recommended publications
  • Enediynes, Enyneallenes, Their Reactions, and Beyond
    Advanced Review Enediynes, enyne-allenes, their reactions, and beyond Elfi Kraka∗ and Dieter Cremer Enediynes undergo a Bergman cyclization reaction to form the labile 1,4-didehy- drobenzene (p-benzyne) biradical. The energetics of this reaction and the related Schreiner–Pascal reaction as well as that of the Myers–Saito and Schmittel reac- tions of enyne-allenes are discussed on the basis of a variety of quantum chemical and available experimental results. The computational investigation of enediynes has been beneficial for both experimentalists and theoreticians because it has led to new synthetic challenges and new computational methodologies. The accurate description of biradicals has been one of the results of this mutual fertilization. Other results have been the computer-assisted drug design of new antitumor antibiotics based on the biological activity of natural enediynes, the investigation of hetero- and metallo-enediynes, the use of enediynes in chemical synthesis and C materials science, or an understanding of catalyzed enediyne reactions. " 2013 John Wiley & Sons, Ltd. How to cite this article: WIREs Comput Mol Sci 2013. doi: 10.1002/wcms.1174 INTRODUCTION symmetry-allowed pericyclic reactions, (ii) aromatic- ity as a driving force for chemical reactions, and (iii) review on the enediynes is necessarily an ac- the investigation of labile intermediates with biradical count of intense and successful interdisciplinary A character. The henceforth called Bergman cyclization interactions of very different fields in chemistry provided deeper insight into the electronic structure involving among others organic chemistry, matrix of biradical intermediates, the mechanism of organic isolation spectroscopy, quantum chemistry, biochem- reactions, and orbital symmetry rules.
    [Show full text]
  • Molecular Biosystems
    Molecular BioSystems View Article Online PAPER View Journal | View Issue Cloning and sequencing of the kedarcidin biosynthetic Cite this: Mol. BioSyst., 2013, gene cluster from Streptoalloteichus sp. ATCC 53650 9, 478 revealing new insights into biosynthesis of the enediyne family of antitumor antibiotics† Jeremy R. Lohman,a Sheng-Xiong Huang,a Geoffrey P. Horsman,b Paul E. Dilfer,a Tingting Huang,a Yihua Chen,b Evelyn Wendt-Pienkowskib and Ben Shenz*abcd Enediyne natural product biosynthesis is characterized by a convergence of multiple pathways, generating unique peripheral moieties that are appended onto the distinctive enediyne core. Kedarcidin (KED) possesses two unique peripheral moieties, a (R)-2-aza-3-chloro-b-tyrosine and an iso- propoxy-bearing 2-naphthonate moiety, as well as two deoxysugars. The appendage pattern of these peripheral moieties to the enediyne core in KED differs from the other enediynes studied to date with respect to stereochemical configuration. To investigate the biosynthesis of these moieties and expand our understanding of enediyne core formation, the biosynthetic gene cluster for KED was cloned from Streptoalloteichus sp. ATCC 53650 and sequenced. Bioinformatics analysis of the ked cluster revealed the presence of the conserved genes encoding for enediyne core biosynthesis, type I and type II polyketide synthase loci likely responsible for 2-aza-L-tyrosine and 3,6,8-trihydroxy-2-naphthonate Received 16th November 2012, formation, and enzymes known for deoxysugar biosynthesis. Genes homologous to those responsible Accepted 20th January 2013 for the biosynthesis, activation, and coupling of the L-tyrosine-derived moieties from C-1027 and DOI: 10.1039/c3mb25523a maduropeptin and of the naphthonate moiety from neocarzinostatin are present in the ked cluster, supporting 2-aza-L-tyrosine and 3,6,8-trihydroxy-2-naphthoic acid as precursors, respectively, for the www.rsc.org/molecularbiosystems (R)-2-aza-3-chloro-b-tyrosine and the 2-naphthonate moieties in KED biosynthesis.
    [Show full text]
  • Probing Interaction Motifs for Ligand Binding Prediction from Three
    PROBING INTERACTION MOTIFS FOR LIGAND BINDING PREDICTION FROM THREE PERSPECTIVES: ASSESSING PROTEIN SIMILARITY, LIGAND SIMILARITY AND COMPONENTS OF PROTEIN-LIGAND INTERACTIONS By Nan Liu A DISSERTATION Submitted to Michigan State University in partial fulfillment of the requirements for the degree of Chemistry – Doctor of Philosophy 2015 ABSTRACT PROBING INTERACTION MOTIFS FOR LIGAND BINDING PREDICTION FROM THREE PERSPECTIVES: ASSESSING PROTEIN SIMILARITY, LIGAND SIMILARITY AND COMPONENTS OF PROTEIN-LIGAND INTERACTIONS By Nan Liu The interactions between small molecules and diverse enzyme, membrane receptor and channel proteins are associated with important biological processes and diseases. This makes the study of binding motifs between proteins and ligands appealing to scientists. We use multiple computational techniques to unveil the protein-ligand interaction motifs from three perspectives. Firstly, from the perspective of proteins, by comparing the structure differences and common features of different binding sites for the same ligand, 3-dimensional motifs that represent the favorable interactions of the same ligands can be extracted. The goal is for such a motif to represent the shared features for binding a certain ligand in unrelated proteins, while discriminating from other ligands. The 3-dimensional motifs for cholesterol and cholate binding to non-homologous protein sites have been extracted, using SimSite3D alignment and analysis of the conserved interactions between these sites. The 3-dimensional protein motif for cholesterol binding can give about 80% accuracy of true positive sites with a low false positive rate. Furthermore, an online server CholMine was established so that the users can use this approach to predict cholesterol and cholate binding sites in proteins of interest.
    [Show full text]
  • Selective Proteolytic Activity of the Antitumor Agent Kedarcidin N
    Proc. Natl. Acad. Sci. USA Vol. 90, pp. 8009-8012, September 1993 Biochemistry Selective proteolytic activity of the antitumor agent kedarcidin N. ZEIN*t, A. M. CASAZZA*, T. W. DOYLE*, J. E. LEETt, D. R. SCHROEDERt, W. SOLOMON*, AND S. G. NADLER§ *Cancer Drug Discovery, Molecular Drug Mechanism, Bristol-Myers Squibb, Pharmaceutical Research Institute, P.O. Box 4000, Princeton, NJ 08543-4000; tChemistry Division, Bristol-Myers Squibb, Pharmaceutical Research Institute, P.O. Box 5100, Wallingford, CT 06492-7660; and §Antitumor Immunology, Bristol-Myers Squibb Pharmaceutical Research Institute, 3005 1st Avenue, Seattle, WA 98121 Communicated by William P. Jencks, May 27, 1993 ABSTRACT Kedarcidin is a potent antitumor antibiotic there is substantial in vitro chemical and structural informa- chromoprotein, composed of an enediyne-containing chro- tion (4-21). Furthermore, it was proposed that the neocarzi- mophore embedded in a highly acidic single chain polypeptide. nostatin apoprotein stabilizes and regulates the availability of The chromophore was shown to cleave duplex DNA site- the labile chromophore (4-9). As previously shown for specifically in a single-stranded manner. Herein, we report that neocarzinostatin (4-9), DNA experiments with the isolated in vitro, the kedarcidin apoprotein, which lacks any detectable chromophore and the kedarcidin chromoprotein demon- chromophore, cleaves proteins selectively. Histones that are the strated that DNA cleavage was mostly due to the chro- most opposite in net charge to the apoprotein are cleaved most mophore (N.Z. and W.S., unpublished data). However, readily. Our findings imply that the potency of kedarcidin cytotoxicity assays using human colon cancer cell lines HCT results from the combination of a DNA damaging-chro- 116 showed the chromophore and the chromoprotein to mophore and a protease-like apoprotein.
    [Show full text]
  • Precursor-Directed Biosynthesis of Azinomycin a and Related Metabolites by Streptomyces Sahachi- Roi
    ORBIT-OnlineRepository ofBirkbeckInstitutionalTheses Enabling Open Access to Birkbeck’s Research Degree output Precursor-Directed Biosynthesis of Azinomycin A and Related Metabolites by Streptomyces sahachi- roi https://eprints.bbk.ac.uk/id/eprint/40052/ Version: Full Version Citation: Sebbar, Abdel-Ilah (2014) Precursor-Directed Biosynthesis of Azinomycin A and Related Metabolites by Streptomyces sahachiroi. [Thesis] (Unpublished) c 2020 The Author(s) All material available through ORBIT is protected by intellectual property law, including copy- right law. Any use made of the contents should comply with the relevant law. Deposit Guide Contact: email Precursor-Directed Biosynthesis of Azinomycin A and Related Metabolites by Streptomyces sahachiroi Abdel-Ilah Sebbar Department of Biological Sciences School of Science Birkbeck College University of London A thesis submitted to the University of London for the degree of Doctor of Philosophy August 2014 Declaration The work presented in this thesis in entirely on my own, except where I have either acknowledged help from a known person or given a published reference. 15/8/14 Signed: ………………. Date:… ………………... PhD student: Abdel-Ilah Sebbar Department of Biological Sciences School of Science Birkbeck College University of London 15/8/14 Signed: Date: …………………... Supervisor: Dr. Philip Lowden Department of Biological Sciences School of Science Birkbeck College University of London 2 Abstract Azinomycins A and B are bioactive compounds produced by Streptomyces species. These naturally occurring antibiotics exhibit potent in vitro cytotoxic activity, promising in vivo antitumor activity and exert their effect by disruption of DNA replication by the formation of interstrand cross-links. The electrophilic C-10 and C-21 carbons contained within the aziridine and epoxide moieties are known to be responsible for the interstrand cross-links through alkylation of N-7 atoms of guanine bases.
    [Show full text]
  • Discovery of Bioactive Natural Products from Actinomycetes by Inactivation and Heterologous Expression of Biosynthetic Gene Clusters
    - 1 - Discovery of Bioactive Natural Products from Actinomycetes by Inactivation and Heterologous Expression of Biosynthetic Gene Clusters Dissertation zur Erlangung des Doktorgrades der Fakultät für Chemie und Pharmazie der Albert-Ludwigs-Universität Freiburg im Breisgau Vorgelegt von Jing Zhu Aus Wuhan, China 2019 - 2 - Dekan: Prof. Dr. Oliver Einsle Vorsitzender des Promotionsausschusses: Prof. Dr. Stefan Weber Referent: Prof. Dr. Andreas Bechthold Korreferent: Prof. Dr. Irmgard Merfort Drittprüfer: Prof. Dr. Stefan Günther Datum der mündlichen Prüfung: 15.05.2019 Datum der Promotion: 04.07.2019 - 3 - Acknowledgements I would like to express my greatly gratitude to my supervisor, Prof. Dr. Andreas Bechthold for giving me the opportunity to study at his group in University of Freiburg and for his enthusiasm, encouragement and support over the last 4 years. I also appreciate his patience and good suggestions when we discuss my project. I also want to thank my second supervisor Prof. Dr. Irmgard Merfort for kind reviewing my dissertation and caring of my research, her serious attitude for scientific research infected me. I would like to express my appreciation to Prof. Dr. Stefan Günther for being the examiner of my dissertation defense. I am very grateful to Dr. Thomas Paululat from University of Siegen for reviewing my manuscript and for structures elucidation and NMR data preparation. I also want to thank Dr. Manfred Keller and Christoph Warth for NMR and HR-ESIMS measurement. I would like to thank Prof. Dr. David Zechel from Queen's University for reviewing my manuscript. I would like to thank Dr. Lin Zhang for his great help with protein crystallization and for his technical advices.
    [Show full text]
  • Rapid PCR Amplification of Minimal Enediyne Polyketide Synthase Cassettes Leads to a Predictive Familial Classification Model
    Rapid PCR amplification of minimal enediyne polyketide synthase cassettes leads to a predictive familial classification model Wen Liu*, Joachim Ahlert*†, Qunjie Gao*†, Evelyn Wendt-Pienkowski*, Ben Shen*‡§, and Jon S. Thorson*†§ *Pharmaceutical Sciences Division, School of Pharmacy, †Laboratory for Biosynthetic Chemistry, and ‡Department of Chemistry, University of Wisconsin, 777 Highland Avenue, Madison, WI 53705 Edited by Christopher T. Walsh, Harvard Medical School, Boston, MA, and approved August 13, 2003 (received for review July 9, 2003) A universal PCR method for the rapid amplification of minimal enediyne warheads may proceed via similar polyunsaturated enediyne polyketide synthase (PKS) genes and the application of polyketide intermediates and established a PKS paradigm for the this methodology to clone remaining prototypical genes from enediyne biosynthesis (18, 19) (the neocarzintostatin cluster was producers of structurally determined enediynes in both family cloned, sequenced, and characterized from Streptomyces carzi- types are presented. A phylogenetic analysis of the new pool nostaticus ATCC 15944 by W.L., E.W.-P., and B.S., unpublished of bona fide enediyne PKS genes, consisting of three from 9-mem- data). Guided by this information, recent high-throughput ge- bered producers (neocarzinostatin, C1027, and maduropeptin) and nome scanning also led to the surprising discovery of functional three from 10-membered producers (calicheamicin, dynemicin, and enediyne PKS genes in diverse organisms previously not known esperamicin),
    [Show full text]
  • (12) United States Patent (10) Patent No.: US 9,005,625 B2 Defrees Et Al
    US009005625B2 (12) United States Patent (10) Patent No.: US 9,005,625 B2 DeFrees et al. (45) Date of Patent: Apr. 14, 2015 (54) ANTIBODY TOXIN CONJUGATES 4,767,702 A 8, 1988 Cohenford 4,806,595 A 2f1989 Noishiki et al. (75) Inventors: Shawn DeFrees, North Wales, PA (US); 4,847,3254,826,945 A 7,5/1989 1989 ShadleCohn et et al. al. Zhi-Guang Wang, Dresher, PA (US) 4,879,236 A 1 1/1989 Smith et al. 4,918,009 A 4, 1990 Nilsson (73) Assignee: Novo Nordisk A/S, Bagsvaerd (DK) 4,925,796 A 5/1990 Bergh et al. 4,980,502 A 12/1990 Felder et al. (*) Notice: Subject to any disclaimer, the term of this Sis g A 3. 3: Eas al past SES yed under 35 5,104,651W I A 4, 1992 BooneaSO et al.a M YW- 5,122,614 A 6/1992 Zalipsky 5,147,788 A 9/1992 Page et al. (21) Appl. No.: 10/565,331 5,153,265 A 10/1992 Shadle et al. 5,154,924 A 10, 1992 Friden (22) PCT Filed: Jul. 26, 2004 5,164,374. A 11/1992 Rademacher et al. 5,166.322 A 11/1992 Shaw et al. 5,169,933 A 12, 1992 Anderson et al. (86). PCT No.: PCT/US2004/024042 5, 180,674. A 1, 1993 Roth 5, 182,107 A 1/1993 Friden E. Sep. 11, 2006 5,194,376 A 3/1993 Kang s e ----9 5,202,413 A 4/1993 Spinu 5,206,344 A 4/1993 Katre et al.
    [Show full text]
  • Harnessing Synthetic Biology for the Bioprospecting and Engineering of Aromatic Polyketide Synthases
    HARNESSING SYNTHETIC BIOLOGY FOR THE BIOPROSPECTING AND ENGINEERING OF AROMATIC POLYKETIDE SYNTHASES A thesis submitted to The University of Manchester for the degree of Doctor of Philosophy in the Faculty of Science and Engineering (2017) MATTHEW J. CUMMINGS SCHOOL OF CHEMISTRY 1 THIS IS A BLANK PAGE 2 List of contents List of contents .............................................................................................................................. 3 List of figures ................................................................................................................................. 8 List of supplementary figures ...................................................................................................... 10 List of tables ................................................................................................................................ 11 List of supplementary tables ....................................................................................................... 11 List of boxes ................................................................................................................................ 11 List of abbreviations .................................................................................................................... 12 Abstract ....................................................................................................................................... 14 Declaration .................................................................................................................................
    [Show full text]
  • The Chemistry of Nine-Membered Enediyne Natural Products
    The Chemistry of Nine-Membered Enediyne Natural Products Zhang Wang MacMillan Group Meeting April 17, 2013 Natural Products Sharing a Unique Structure OH O O H H OH O Me O MeO Cl OH HO O Me Cl O Me O O O H OH OH NC H OH [O] OH R2 cyanosporaside A R sporolide A H 1 [O] R OH [O] O O Cl O Me R1 = H, R2 = Cl Cl MeO H OH or R1 = Cl, R2 = H OH O O HO O O Me O H H Me OH O H OH OH NC OH cyanosporaside B sporolide B Oh, D.-C.; Williams, P. G.; Kauffman, C. A.; Jensen, P. R.; Fenical, W. Org. Lett. 2006, 8, 1021-1024. Buchanan, G. O.; Williams, P. G.; Feling R. H.; Kauffman, C. A.; Jensen, P. R.; Fenical, W. Org. Lett. 2005, 7, 2731-2734. Natural Products Sharing a Unique Structure OH O O H H OH O Me O MeO Cl OH HO O Me Cl O Me O O O H OH OH NC H OH OH cyanosporaside A R sporolide A OH O O + "magic" Cl + "HCl" O Me Cl OH MeO H OH O O HO O O Me O H H Me OH O H OH OH NC OH cyanosporaside B sporolide B Oh, D.-C.; Williams, P. G.; Kauffman, C. A.; Jensen, P. R.; Fenical, W. Org. Lett. 2006, 8, 1021-1024. Buchanan, G. O.; Williams, P. G.; Feling R. H.; Kauffman, C. A.; Jensen, P. R.; Fenical, W. Org. Lett. 2005, 7, 2731-2734.
    [Show full text]
  • Mechanistic Studies of Radical Sam Enzymes in Cystobactamid
    MECHANISTIC STUDIES OF RADICAL SAM ENZYMES IN CYSTOBACTAMID, ANAEROBILIN AND THIAMIN BIOSYNTHESIS A Dissertation by YUANYOU WANG Submitted to the Office of Graduate and Professional Studies of Texas A&M University in partial fulfillment of the requirements for the degree of DOCTOR OF PHILOSOPHY Chair of Committee, Tadhg P. Begley Committee Members, Frank M. Raushel Coran M. H. Watanabe Craig D. Kaplan Head of Department, Simon W. North May 2019 Major Subject: Chemistry Copyright 2019 Yuanyou Wang ABSTRACT The radical S-adenosylmethionine (SAM) enzymes represent a large class enzyme that catalyzes a wide range of reactions, including chemically challenging reactions in critical pathways across all domains of life. Work here describes the detailed mechanistic studies of three of these enzymes in unusual methylation, ring cleavage, and rearrangement reactions. CysS is a cobalamin-dependent radical SAM methyltransferase that catalyzes the iterative methylations on the 3-methoxy-4-aminobenzoic acid moieties of the antibiotic cystobactamids. We were able to reconstitute the activity of CysS in vitro and demonstrate that it can catalyze sequential methylations from a methyl group to form not only ethyl, isopropyl groups but also sec-butyl, t-butyl groups by a radical mechanism for the first time. To further elucidate the mechanism, different strategic substrate analogs were designed to trap the organic radical species, cobalamin intermediates and probe the radical substitution step. Based on all the isotope labeling studies and substrate analogs experiments, we were able to build a detailed mechanistic model to reveal how CysS uses cobalamin, SAM, [4Fe− 4S] cluster to perform the unusual iterative methylations. ChuW can catalyze a radical-mediated reaction to methylate and break the protoporphyrin ring of heme to release iron in an anaerobic heme degradation pathway.
    [Show full text]
  • Controlling the Reactivity of Bergman and Myers-Saito Cyclizations
    CONTROLLING THE REACTIVITY OF BERGMAN AND MYERS-SAITO CYCLIZATIONS Reported by Daniel A. Ryan November 4, 2002 INTRODUCTION Enediyne compounds have captured the imagination of chemists since the discovery of calicheamicin (1) and neocarsinostatin (2)—natural products three orders of magnitude more potent than other anti-cancer drugs.1 In following years, other powerful enediyne toxins such as dynemicin, kedarcidin, esperamicin, maduropeptin, and C-1027 were discovered.2 Preliminary studies focused on the total synthesis and elucidation of the biological mode of action of these natural products. HO Me S S S OH O O NHEt O AcHN MeO O O OMe O O O O O Me OH Me O OMe Me NH O O I O S O Me O NHMe O OMe OH OH OMe OH Me O HO MeO Calicheamycin Neocarsinostatin OH 1 2 Figure 1. Enediyne antitumor agents calicheamycin and neocarsinostatin. Although enediynes have stimulated considerable synthetic interest, their clinical use has been limited because of their modest selectivity for cancer cells.3 It was determined that the biological activity of these enediyne compounds is dependent on the Bergman cyclization, or in the case of Neocarsinostatin (2), the Myers-Saito cyclization (Scheme 1).2 To understand and modify the biological Scheme 1 activity of these toxins, factors that influence the reactivity of the Bergman and Myers-Saito ∆∆ CH2 C Me cyclizations have been explored. These new advances will be reported herein. Bergman Myers-Saito Biological Mode of Action The antitumor activity of enediyne natural products stems from their ability to cleave double- stranded DNA (dsDNA), which induces cell apoptosis.4 The biological mode of action occurs along one of two general pathways, depending on the type of enediyne structure (Scheme 2).
    [Show full text]