Bacterial Cultures Care Guide SCIENTIFIC Introduction Use the Following Guide to Learn How to Properly Care for Bacterial Cultures
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Enterobacteriaceae Family (CRE), Is of Utmost Importance for the Enterobacteriaceae Management of Infected Or Colonized Patients
2013 iMedPub Journals THE INTERNATIONAL ARABIC JOURNAL Vol. 3 No. 3:5 Our Site: http://www.imedpub.com/ OF ANTIMICROBIAL AGENTS doi: 10.3823/737 Evaluation of Rula Al-Dawodi1,3, Rawan Liddawi1,3, Raed Ghneim1,3, Randa Kattan1,3, Issa Siryani1,3, Afaf Abu-Diab1, Riyad Meropenem, Ghneim1, Madeleine Zoughbi1,3, Abed-El-Razeq Issa1,3, Randa Al Qass1,3, Sultan Turkuman1, Hiyam Marzouqa1, and Imipenem and Musa Hindiyeh1,2,3* Ertapenem 1 Caritas Baby Hospital, 3 Palestinian Forum for Medical * Correspondence: Bethlehem, Palestine; Research (PFMR), Ramallah, Impregnated 2 Bethlehem University, Palestine Bethlehem, Palestine; [email protected] MacConkey * Musa Y Hindiyeh, Caritas Baby Hospital Bethlehem Agar Plates for Palestine. the Detection of Carbapenem Abstract Resistant Background: Rapid detection of carbapenem resistant bacteria, in particular, members of the Enterobacteriaceae family (CRE), is of utmost importance for the Enterobacteriaceae management of infected or colonized patients. Methods: Three carbapenems; meropenem, imipenem and ertapenem, with two different concentrations (0.5 mg/ml and 1.0 mg/ml), were impregnated in Mac- Conkey agar. The carbapenem impregnated MacConkey agar plates; ([Mac-Mem], [Mac-Imp] and [Mac-Ert]), were then evaluated for the detection of carbapenem resistant Gram-negative bacteria in particular the blaKPC producing Enterobacteria- ceae. The Limit of Detection (LOD) of the plates was determined in triplicate after serial logarithmic dilution of the bacterial strains in saline. This was followed by inoculating the plates and counting the colonies that grew after 24 hours of incu- bation. The specificity and the shelf-life of the plates were determined by testing the plates with six Extended Spectrum β-lactamases (ESBL) producing members of the Enterobacteriaceae family and one genus with the blaAmpC phenotype. -
Fiber-Associated Spirochetes Are Major Agents of Hemicellulose Degradation in the Hindgut of Wood-Feeding Higher Termites
Fiber-associated spirochetes are major agents of hemicellulose degradation in the hindgut of wood-feeding higher termites Gaku Tokudaa,b,1, Aram Mikaelyanc,d, Chiho Fukuia, Yu Matsuuraa, Hirofumi Watanabee, Masahiro Fujishimaf, and Andreas Brunec aTropical Biosphere Research Center, Center of Molecular Biosciences, University of the Ryukyus, Nishihara, 903-0213 Okinawa, Japan; bGraduate School of Engineering and Science, University of the Ryukyus, Nishihara, 903-0213 Okinawa, Japan; cResearch Group Insect Gut Microbiology and Symbiosis, Max Planck Institute for Terrestrial Microbiology, 35043 Marburg, Germany; dDepartment of Entomology and Plant Pathology, North Carolina State University, Raleigh, NC 27607; eBiomolecular Mimetics Research Unit, Institute of Agrobiological Sciences, National Agriculture and Food Research Organization, Tsukuba, 305-8634 Ibaraki, Japan; and fDepartment of Sciences, Graduate School of Sciences and Technology for Innovation, Yamaguchi University, Yoshida 1677-1, 753-8512 Yamaguchi, Japan Edited by Nancy A. Moran, University of Texas at Austin, Austin, TX, and approved November 5, 2018 (received for review June 25, 2018) Symbiotic digestion of lignocellulose in wood-feeding higher digestion in the hindgut of higher termites must be attributed to termites (family Termitidae) is a two-step process that involves their entirely prokaryotic microbial community (5). endogenous host cellulases secreted in the midgut and a dense The gut microbiota of higher termites comprises more than bacterial community in the hindgut compartment. The genomes of 1,000 bacterial phylotypes, which are organized into distinc- the bacterial gut microbiota encode diverse cellulolytic and hemi- tive communities colonizing the microhabitats provided by the cellulolytic enzymes, but the contributions of host and bacterial compartmentalized intestine, including the highly differentiated symbionts to lignocellulose degradation remain ambiguous. -
Macconkey Agar, CS, Product Information
MacCONKEY AGAR, CS (7391) Intended Use MacConkey Agar, CS is used for the isolation and differentiation of Gram-negative enteric bacilli from specimens containing swarming strains of Proteus spp. in a laboratory setting. MacConkey Agar, CS is not intended for use in the diagnosis of disease or other conditions in humans Product Summary and Explanation MacConkey Agar is based on the bile salt-neutral red-lactose agar of MacConkey.1 The original MacConkey medium was used to differentiate strains of Salmonella typhosa from members of the coliform group. Formula modifications improved growth of Shigella and Salmonella strains. These modifications include the addition of 0.5% sodium chloride, decreased agar content, altered bile salts, and neutral red concentrations. The formula modifications improved differential reactions between enteric pathogens and coliforms. MacConkey Agar, CS (“Controlled Swarming”) contains carefully selected raw materials to reduce swarming of Proteus spp., which could cause difficulty in isolating and enumerating other Gram-negative bacilli. Principles of the Procedure Enzymatic Digest of Gelatin, Enzymatic Digest of Casein, and Enzymatic Digest of Animal Tissue are the nitrogen and vitamin sources in MacConkey Agar, CS. Lactose is the fermentable carbohydrate. During Lactose fermentation a local pH drop around the colony causes a color change in the pH indicator, Neutral Red, and bile precipitation. Bile Salts and Crystal Violet are the selective agents, inhibiting Gram-positive cocci and allowing Gram-negative organisms to grow. Sodium Chloride maintains the osmotic environment. Agar is the solidifying agent. Formula / Liter Enzymatic Digest of Gelatin .................................................... 17 g Enzymatic Digest of Casein ................................................... 1.5 g Enzymatic Digest of Animal Tissue....................................... -
A General Protein O-Glycosylation Gene Cluster Encodes the Species-Specific Glycan of the Oral Pathogen Tannerella Forsythia
fmicb-09-02008 August 27, 2018 Time: 10:24 # 1 ORIGINAL RESEARCH published: 28 August 2018 doi: 10.3389/fmicb.2018.02008 A General Protein O-Glycosylation Gene Cluster Encodes the Species-Specific Glycan of the Oral Pathogen Tannerella forsythia: Edited by: O-Glycan Biosynthesis and Catherine Ayn Brissette, University of North Dakota, Immunological Implications United States Reviewed by: Markus B. Tomek1, Daniel Maresch2, Markus Windwarder2†, Valentin Friedrich1, Jerry Eichler, Bettina Janesch1, Kristina Fuchs1, Laura Neumann2†, Irene Nimeth1, Nikolaus F. Zwickl3, Ben-Gurion University of the Negev, Juliane C. Dohm3, Arun Everest-Dass4, Daniel Kolarich4, Heinz Himmelbauer3, Israel Friedrich Altmann2 and Christina Schäffer1* Yoann Rombouts, UMR5089 Institut de Pharmacologie 1 NanoGlycobiology Unit, Department of NanoBiotechnology, Universität für Bodenkultur Wien, Vienna, Austria, 2 Division et de Biologie Structurale (IPBS), of Biochemistry, Department of Chemistry, Universität für Bodenkultur Wien, Vienna, Austria, 3 Bioinformatics Group, France Department of Biotechnology, Universität für Bodenkultur Wien, Vienna, Austria, 4 Institute for Glycomics, Griffith University, *Correspondence: Brisbane, QLD, Australia Christina Schäffer [email protected] The cell surface of the oral pathogen Tannerella forsythia is heavily glycosylated with † Present address: a unique, complex decasaccharide that is O-glycosidically linked to the bacterium’s Markus Windwarder, Shire Austria GmbH, Vienna, Austria abundant surface (S-) layer, as well -
Growth Conditions and Experimental Setup for Bacterial Growth and the Fading of Phenolphthalein in Alkaline Solution
GROWTH CONDITIONS AND EXPERIMENTAL SETUP FOR BACTERIAL GROWTH AND THE FADING OF PHENOLPHTHALEIN IN ALKALINE SOLUTION Bachelor Degree Project in Cell and Molecular Biology 15p Autumn term 2011 Kalle Backlöf Supervisor: Mikael Ejdebäck Examiner: Diana Karlsson Abstract The whole project consisted of two different parts. The first subproject were running optical density measurements to assist in finding optimal growth conditions and experimental setup for use of E.coli BL21 (DE3) bacteria with the PYCARD gene transformed into them. The transformed bacteria will be used for generating data for modeling. Previous laboratory attempts had problems with timing of the exponential phase when several tests were performed simultaneously. The optimizations of a method for displaying growth include trying out using different medium but also different inoculation ratios between culture and medium to see the effects on growth rate. Results have shown that lysogeny broth together with an inoculation ratio of 1:25 results in rapid absorbance increase in the bacterial growth curves. The second part of the thesis project was to study the kinetics of fading of phenolphthalein in sodium hydroxide solution in order to provide a basis for experiments illustrating this in laboratory environment. Phenolphthalein is used in many different applications such as an active ingredient in some laxatives but the perhaps most common use is as an acid-base indicator of pH. The experiments were performed by mixing alkaline solutions of varying sodium hydroxide concentration together with sodium chloride, then after addition of phenolphthalein to study absorbance variations over time to illustrate the rate law which correlates the rate of color fade to sodium hydroxide concentration. -
Lactococcus Lactis Cholangitis and Bacteremia Identified by MALDI-TOF Mass Spectrometry
J Infect Chemother xxx (2018) 1e6 Contents lists available at ScienceDirect Journal of Infection and Chemotherapy journal homepage: http://www.elsevier.com/locate/jic Case Report Lactococcus lactis cholangitis and bacteremia identified by MALDI-TOF mass spectrometry: A case report and review of the literature on Lactococcus lactis infection* * Akihiko Shimizu a, , Ryota Hase a, b, Daisuke Suzuki a, Akihiro Toguchi c, Yoshihito Otsuka c, Nobuto Hirata d, Naoto Hosokawa a a Department of Infectious Diseases, Kameda Medical Center, 929 Higashicho, Kamogawa, Chiba, 2968602, Japan b Department of Infectious Diseases, Japanese Red Cross Narita Hospital, 90-1 Iidacho, Narita, Chiba, 2868523, Japan c Department of Laboratory Medicine, Kameda Medical Center, 929 Higashicho, Kamogawa, Chiba, 2968602, Japan d Department of Gastroenterology, Kameda Medical Center, 929 Higashicho, Kamogawa, Chiba, 2968602, Japan article info abstract Article history: Lactococcus lactis is a rare causative organism in humans. Cases of L. lactis infection have only rarely been Received 22 March 2018 reported. However, because it is often difficult to identify by conventional commercially available Received in revised form methods, its incidence may be underestimated. We herein report the case of a 70-year-old man with 30 June 2018 cholangiocarcinoma who developed L. lactis cholangitis and review previously reported cases of L. lactis Accepted 17 July 2018 infection. Our case was confirmed by matrix-assisted desorption/ionization time-of-flight mass spec- Available online xxx trometry (MALDI-TOF MS). This case shows L. lactis is a potential causative pathogen of cholangitis and that MALDI-TOF MS can be useful for the rapid and accurate identification of L. -
Antimicrobial Activity of Lactococcus Lactis Subsp. Lactis Isolated
microorganisms Article Antimicrobial Activity of Lactococcus lactis subsp. lactis Isolated from a Stranded Cuvier’s Beaked Whale (Ziphius cavirostris) against Gram-Positive and -Negative Bacteria Akihiko Suzuki and Miwa Suzuki * Laboratory of Aquatic Animal Physiology, Department of Marine Science and Resources, Graduate School of Bioresource Sciences, Nihon University, 1866 Kameino, Fujisawa 252-0880, Japan; [email protected] * Correspondence: [email protected]; Tel.: +81-4668-43677 Abstract: In the present study, we isolated and characterized Lactococcus lactis (L. lactis) subsp. lactis from a female Cuvier’s beaked whale (Ziphius cavirostris) stranded in Shizuoka, Japan. Only five isolates (CBW1-5), grown on Lactobacilli de Man Rogosa Sharpe (MRS) agar plates prepared using 50% artificial seawater, were positive in L. lactis species-specific primer PCR. Their 16S rRNA sequences were highly similar to those of L. lactis subsp. lactis JCM 5805T. The Gram reaction, motility, gas production from glucose, catalase production, and growth conditions were consistent with those of the type strain. Additionally, carbohydrate utilization of the strains was consistent with previously reported marine organism-derived strains. The pH-neutralized cell-free culture supernatant of strain CBW2 inhibited the growth of Bacillus subtilis subsp. subtilis ATCC 6051 and Vibrio alginolyticus ATCC 17749, whereas protease treatment eliminated or diminished its inhibitory Citation: Suzuki, A.; Suzuki, M. activity. The strain possesses a precursor of the nisin structural gene (nisA), which showed 100% Antimicrobial Activity of Lactococcus homology with nisin Z, and nisin biosynthesis-related genes (nisB, nisC, nisT, nisP, nisF, nisI, and lactis subsp. lactis Isolated from a nisRK), suggesting that the strain produces a nisin-like substance. -
Macconkey Agar Base
MACCONKEY AGAR BASE INTENDED USE Remel MacConkey Agar Base is a solid medium recommended for use in qualitative procedures for ithe cultivation of gram-negative bacilli. SUMMARY AND EXPLANATION In 1900, MacConkey first described a neutral red bile salt medium for cultivation and identification of enteric organisms.1 A detailed description of the selective and differential properties of the medium was published in 1905.2 Over the years, MacConkey’s original formula has been modified; the agar content has been reduced, the concentration of bile salts and neutral red has been adjusted, and sodium chloride has been added.3 MacConkey Agar Base is used with added carbohydrate to differentiate enteric gram-negative bacilli based on fermentation reactions. PRINCIPLE Peptones provide nitrogenous nutrients and amino acids necessary for bacterial growth. Sodium chloride supplies essential electrolytes and maintains osmotic equilibrium. Crystal violet and bile salts are selective agents which inhibit most gram-positive organisms. MacConkey Agar Base is used with added carbohydrate to differentiate enteric gram-negative bacilli based on fermentation reactions. When the carbohydrate is fermented, a local pH drop around the colony causes bile preciptitation in the agar around the colony. Neutral red is an indicator which turns colonies pink when the carbohydrate is fermented. Agar is a solidifying agent. REAGENTS (CLASSICAL FORMULA)* Gelatin Peptone .............................................................. 17.0 g Meat Peptone ..................................................................1.5 -
Macconkey Agar Plate
MacConkey Agar Plate MPH081 Intended Use Recommended for selective isolation and differentiation of E.coli and other enteric bacteria from pharmaceutical products in accordance with the microbial limit testing by harmonized methodology of USP/EP/BP/JP. Composition** Ingredients Gms / Litre Gelatin peptone # 17.000 HMC peptone ## 3.000 Lactose monohydrate 10.000 Sodium chloride 5.000 Bile salts 1.500 Neutral red 0.030 Crystal violet 0.001 Agar 13.500 pH after sterilization ( at 25°C) 7.1±0.2 **Formula adjusted, standardized to suit performance parameters # Pancreatic digest of gelatin ## Peptones (meat and casein) Directions Either streak, inoculate or surface spread the test inoculum (50-100 CFU) aseptically on the plate. Principle And Interpretation MacConkey Agar is the earliest selective and differential medium for cultivation of coliform organisms (8,9). Subsequently MacConkey Agar and Broth have been recommended for use in microbiological examination of foodstuffs (10) and for direct plating / inoculation of water samples for coliform counts (1). This medium is also accepted by the Standard Methods for the Examination of Milk and Dairy Products (12). It is recommended in pharmaceutical preparations and is in accordance with the harmonized method of USP/EP/BP/JP (11,2,3,6). Gelatin peptone and HMC peptone provide the essential nutrients, vitamins and nitrogenous factors required for growth of microorganisms. Lactose monohydrate is the fermentable source of carbohydrate. The selective action of this medium is attributed to crystal violet and bile salts, which are inhibitory to most species of gram-positive bacteria. Sodium chloride maintains the osmotic balance in the medium. -
Product List 2008/09
Product List 2008/09 Part of Thermo Fisher Scientific Oxoid Chromogenic Media … Sheer Brilliance™ to reflect this, the names of products are being changed so that the current range now includes: Brilliance Bacillus cereus Agar Brilliance Candida Agar Brilliance E. coli/coliform Agar Brilliance E. coli/coliform Selective Agar Brilliance Enterobacter sakazakii Agar (DFI) Brilliance Listeria Agar Brilliance UTI Agar Brilliance UTI Clarity Agar Brilliance Salmonella Agar The chromogens used in our Brilliance range of chromogenic media ensure that colony colours are vivid, allowing rapid, easy differentiation and presumptive identification of the organism in question. So remember Brilliance – chromogenic media that delivers clearly visible answers on a single culture plate. Contents 1 Culture Media & Supplements 2 Supplementary Reagents 20 Antibiotic Single Supplements 21 Biochemical Reagents 22 Laboratory Preparations & Biological Extracts 22 Veggietones 24 Bagged Media 25 Dip Slides 25 Atmosphere Generation 26 AGS 26 Traditional Systems 27 Food Testing 28 DuPont Qualicon 29 BAX® System, Test and Components 29 Culture Media for the BAX System 30 RiboPrinter® Microbial Characterisation System 31 Lateral Flow System Range 31 Blood Culture 32 Signal 32 Wampole Isolator® 32 Antimicrobial Susceptibility Testing 33 M.I.C.Evaluator Strips 33 aura image 34 AST Accessories 34 Antimicrobial Susceptibility Testing Discs 35 Miscellaneous 38 Sundries 38 Publications 38 Diagnostics 39 Biochemical I.D. 39 Toxin Detection Kits 40 Agglutination Tests 41 Enzyme Immunoassays 42 Immunofluorescence Assays 43 Lateral Flow Assays 44 Environmental Monitoring and Process Simulation 45 Oxoid Air Sampler 45 Environmental Monitoring Swabs 45 Prepared Media 45 Dehydrated Media 45 Process Simulation 46 2 Culture Media and Supplements A wide range of general purpose, enrichment, selective and differential Anaerobe Basal Broth media, diluents and supplements a medium for general growth of anaerobes NB: information provided here is intended only as an aid to purchasing. -
Microbiological and Metagenomic Characterization of a Retail Delicatessen Galotyri-Like Fresh Acid-Curd Cheese Product
fermentation Article Microbiological and Metagenomic Characterization of a Retail Delicatessen Galotyri-Like Fresh Acid-Curd Cheese Product John Samelis 1,* , Agapi I. Doulgeraki 2,* , Vasiliki Bikouli 2, Dimitrios Pappas 3 and Athanasia Kakouri 1 1 Dairy Research Department, Hellenic Agricultural Organization ‘DIMITRA’, Katsikas, 45221 Ioannina, Greece; [email protected] 2 Hellenic Agricultural Organization ‘DIMITRA’, Institute of Technology of Agricultural Products, 14123 Lycovrissi, Greece; [email protected] 3 Skarfi EPE—Pappas Bros Traditional Dairy, 48200 Filippiada, Greece; [email protected] * Correspondence: [email protected] (J.S.); [email protected] (A.I.D.); Tel.: +30-2651094789 (J.S.); +30-2102845940 (A.I.D.) Abstract: This study evaluated the microbial quality, safety, and ecology of a retail delicatessen Galotyri-like fresh acid-curd cheese traditionally produced by mixing fresh natural Greek yogurt with ‘Myzithrenio’, a naturally fermented and ripened whey cheese variety. Five retail cheese batches (mean pH 4.1) were analyzed for total and selective microbial counts, and 150 presumptive isolates of lactic acid bacteria (LAB) were characterized biochemically. Additionally, the most and the least diversified batches were subjected to a culture-independent 16S rRNA gene sequencing analysis. LAB prevailed in all cheeses followed by yeasts. Enterobacteria, pseudomonads, and staphylococci were present as <100 viable cells/g of cheese. The yogurt starters Streptococcus thermophilus and Lactobacillus delbrueckii were the most abundant LAB isolates, followed by nonstarter strains of Lactiplantibacillus, Lacticaseibacillus, Enterococcus faecium, E. faecalis, and Leuconostoc mesenteroides, Citation: Samelis, J.; Doulgeraki, A.I.; whose isolation frequency was batch-dependent. Lactococcus lactis isolates were sporadic, except Bikouli, V.; Pappas, D.; Kakouri, A. Microbiological and Metagenomic for one cheese batch. -
Obesity-Associated Gut Microbiota Is Enriched in Lactobacillus Reuteri and Depleted in Bifidobacterium Animalis and Methanobrevibacter Smithii
International Journal of Obesity (2012) 36, 817–825 & 2012 Macmillan Publishers Limited All rights reserved 0307-0565/12 www.nature.com/ijo ORIGINAL ARTICLE Obesity-associated gut microbiota is enriched in Lactobacillus reuteri and depleted in Bifidobacterium animalis and Methanobrevibacter smithii M Million1, M Maraninchi2, M Henry1, F Armougom1, H Richet1, P Carrieri3,4,5, R Valero2,DRaccah6, B Vialettes2 and D Raoult1 1URMITE -CNRS UMR 6236 IRD 198, IFR 48, Faculte´ de Me´decine, Universite´ de la Me´diterrane´e, Marseille, France; 2Service de Nutrition, Maladies Me´taboliques et Endocrinologie, UMR-INRA U1260, CHU de la Timone, Marseille, France; 3INSERM, U912(SE4S), Marseille, France; 4Universite´ Aix Marseille, IRD, UMR-S912, Marseille, France; 5ORS PACA, Observatoire Re´gional de la Sante´ Provence Alpes Coˆte d’Azur, Marseille, France and 6Service de Nutrition et Diabe´tologie, CHU Sainte Marguerite, Marseille, France Background: Obesity is associated with increased health risk and has been associated with alterations in bacterial gut microbiota, with mainly a reduction in Bacteroidetes, but few data exist at the genus and species level. It has been reported that the Lactobacillus and Bifidobacterium genus representatives may have a critical role in weight regulation as an anti-obesity effect in experimental models and humans, or as a growth-promoter effect in agriculture depending on the strains. Objectives and methods: To confirm reported gut alterations and test whether Lactobacillus or Bifidobacterium species found in the human gut are associated with obesity or lean status, we analyzed the stools of 68 obese and 47 controls targeting Firmicutes, Bacteroidetes, Methanobrevibacter smithii, Lactococcus lactis, Bifidobacterium animalis and seven species of Lactobacillus by quantitative PCR (qPCR) and culture on a Lactobacillus-selective medium.