Genetic Targeting of NRXN2 in Mice Unveils Role in Excitatory Cortical Synapse Function and Social Behaviors

Total Page:16

File Type:pdf, Size:1020Kb

Genetic Targeting of NRXN2 in Mice Unveils Role in Excitatory Cortical Synapse Function and Social Behaviors King’s Research Portal DOI: 10.3389/fnsyn.2015.00003 Document Version Publisher's PDF, also known as Version of record Link to publication record in King's Research Portal Citation for published version (APA): Born, G., Grayton, H. M., Langhorst, H., Dudanova, I., Rohlmann, A., Woodward, B. W., Collier, D. A., Fernandes, C., & Missler, M. (2015). Genetic targeting of NRXN2 in mice unveils role in excitatory cortical synapse function and social behaviors. Frontiers in Synaptic Neuroscience, 7(0), [3]. https://doi.org/10.3389/fnsyn.2015.00003 Citing this paper Please note that where the full-text provided on King's Research Portal is the Author Accepted Manuscript or Post-Print version this may differ from the final Published version. If citing, it is advised that you check and use the publisher's definitive version for pagination, volume/issue, and date of publication details. And where the final published version is provided on the Research Portal, if citing you are again advised to check the publisher's website for any subsequent corrections. General rights Copyright and moral rights for the publications made accessible in the Research Portal are retained by the authors and/or other copyright owners and it is a condition of accessing publications that users recognize and abide by the legal requirements associated with these rights. •Users may download and print one copy of any publication from the Research Portal for the purpose of private study or research. •You may not further distribute the material or use it for any profit-making activity or commercial gain •You may freely distribute the URL identifying the publication in the Research Portal Take down policy If you believe that this document breaches copyright please contact [email protected] providing details, and we will remove access to the work immediately and investigate your claim. Download date: 27. Sep. 2021 ORIGINAL RESEARCH ARTICLE published: 19 February 2015 SYNAPTIC NEUROSCIENCE doi: 10.3389/fnsyn.2015.00003 Genetic targeting of NRXN2 in mice unveils role in excitatory cortical synapse function and social behaviors Gesche Born 1‡, Hannah M. Grayton 2,3‡, Hanna Langhorst 1†, Irina Dudanova 1†, Astrid Rohlmann 1, Benjamin W. Woodward 2, David A. Collier 2,3, Cathy Fernandes 2‡ and Markus Missler 1,4*‡ 1 Institute of Anatomy and Molecular Neurobiology, Westfälische Wilhelms-University, Münster, Germany 2 Social, Genetic and Developmental Psychiatry Centre, Institute of Psychiatry, Psychology and Neuroscience, King’s College London, London, UK 3 Discovery Neuroscience Research, Eli Lilly and Company Ltd., Surrey, UK 4 Cluster of Excellence EXC 1003, Cells in Motion, Münster, Germany Edited by: Human genetics has identified rare copy number variations and deleterious mutations Volkmar Lessmann, for all neurexin genes (NRXN1-3) in patients with neurodevelopmental diseases, and Otto-von-Guericke University, electrophysiological recordings in animal brains have shown that Nrxns are important Germany for synaptic transmission. While several mouse models for Nrxn1α inactivation have Reviewed by: Simon Rumpel, Research Institute previously been studied for behavioral changes, very little information is available for other of Molecular Pathology, Austria variants. Here, we validate that mice lacking Nrxn2α exhibit behavioral abnormalities, Thomas Endres, Otto-von-Guericke characterized by social interaction deficits and increased anxiety-like behavior, which University, Germany partially overlap, partially differ from Nrxn1α mutant behaviors. Using patch-clamp *Correspondence: recordings in Nrxn2α knockout brains, we observe reduced spontaneous transmitter Markus Missler, Institute of Anatomy and Molecular release at excitatory synapses in the neocortex. We also analyse at this cellular level Neurobiology, Westfälische anovelNRXN2 mouse model that carries a combined deletion of Nrxn2α and Nrxn2β. Wilhelms-University, Vesaliusweg Electrophysiological analysis of this Nrxn2-mutant mouse shows surprisingly similar 2-4, 48149 Münster, Germany defects of excitatory release to Nrxn2α, indicating that the β-variant of Nrxn2 has no e-mail: Markus.Missler@ uni-muenster.de strong function in basic transmission at these synapses. Inhibitory transmission as †Present address: well as synapse densities and ultrastructure remain unchanged in the neocortex of Hanna Langhorst and Irina both models. Furthermore, at Nrxn2α and Nrxn2-mutant excitatory synapses we find Dudanova, Max Planck Institute of an altered facilitation and N-methyl-D-aspartate receptor (NMDAR) function because Neurobiology, Martinsried, Germany NMDAR-dependent decay time and NMDAR-mediated responses are reduced. As Nrxn (I.D.); Max-Delbrück-Centrum für Molekulare Medizin, Berlin, can indirectly be linked to NMDAR via neuroligin and PSD-95, the trans-synaptic nature Germany (H.L.) of this complex may help to explain occurrence of presynaptic and postsynaptic effects. ‡These authors have contributed Since excitatory/inhibitory imbalances and impairment of NMDAR function are alledged equally to this work. to have a role in autism and schizophrenia, our results support the idea of a related pathomechanism in these disorders. Keywords: vesicle release, synaptic plasticity, cognition, electron microscopy, AMPA receptor, NMDA receptor, anxiety-like behavior, social interaction INTRODUCTION isoforms, from independent promoters (Tabuchi and Sudhof, Synapse function and plasticity in the brain depend on the coor- 2002; Runkel et al., 2013). These are then alternatively spliced dinated action of molecular machineries across the synaptic cleft. at five, possibly six, conserved sites (Tabuchi and Sudhof, 2002; Presynaptic neurexins (Nrxns) form trans-synaptic complexes Treutlein et al., 2014). α-Nrxns encode six LNS domains with with postsynaptic neuroligins and other partners that are suited to three interspersed EGF-like domains, while β-Nrxns contain a mediate such function (Missler et al., 2012; Reissner et al., 2013). single LNS-domain that is identical to the sixth LNS-domain Consistent with this role, an association has been established of the corresponding α-Nrxn, and mediates binding, for exam- between copy number variations or hemizygous exonic deletions ple, to neuroligins (Ichtchenko et al., 1995; Boucard et al., 2005; within the NRXN1 gene (2p16.3) and neurodevelopmental dis- Reissner et al., 2008). Studies of knockout mice have revealed orders, including autism, schizophrenia and intellectual disability essential functions for α-Nrxns and neuroligins at excitatory and (Feng et al., 2006; Szatmari et al., 2007; Kim et al., 2008; Kirov inhibitory synapses (Missler et al., 2003; Varoqueaux et al., 2006). et al., 2008; Yan et al., 2008; Zahir et al., 2008; Rujescu et al., 2009; Multiple knockout of all three α-Nrxns is lethal at birth due to a Zweier et al., 2009; Ching et al., 2010; Voineskos et al., 2011; Yue dramatic impairment of Ca2+-dependent vesicle release (Missler et al., 2011; Buxbaum et al., 2012; Camacho-Garcia et al., 2012; et al., 2003; Kattenstroth et al., 2004; Zhang et al., 2005), but even Liu et al., 2012; Hoeffding et al., 2014). removal of a single Nrxn1α isoform reduces glutamatergic trans- Vertebrates contain three NRXN genes (NRXN1-3) that mission (Missler et al., 2003; Etherton et al., 2009). While levels each produce longer α-Nrxn and shorter β-Nrxn extracellular of β-Nrxns appeared unchanged in α-Nrxns KO mice (Missler Frontiers in Synaptic Neuroscience www.frontiersin.org February 2015 | Volume 7 | Article 3 | 1 Born et al. Abnormalities in neurexin-2 mouse mutants et al., 2003), no information of deletion of β-Nrxns in mice is ethical review panel of King’s College, and U.K. Home Office available yet. Animals Scientific Procedures Act 1986 (license PPL:70/7184). In studies on autism spectrum disorders, which are character- Other experiments were approved by the Landesamt für Natur, ized clinically by impairments in reciprocal social interactions and Umwelt und Verbraucherschutz NRW, Germany (license 84- communication as well as stereotyped behaviors, rare heterozy- 02.05.20.11.209). gous deletions in the NRXN1 gene are considered as causative variants (Delorme et al., 2013). Consequently, several studies have Combined Nrxn2 mouse model addressed higher brain functions in NRXN1 mouse models by To delete the α-andβ-variants of the Nrxn2 gene together, part behavioral profiling (Ey et al., 2011). Nrxn1α homozygote KO of exon 23 (Tabuchi and Sudhof, 2002) was deleted, and the mice display a decrease in social investigation and an increase gene interrupted between splice insert #5 into the 3UTR. Mutant in aggressive behavior as well as reduced locomotor activity mice were originally generated in Thomas C. Südhof’s laboratory in novel environments (Grayton et al., 2013), impairments in (Stanford University, USA), which will also provide additional prepulse inhibition of the startle response, deficits in nest build- analyses at a later time point. Genotyping was performed by PCR ing activities, and an improvement in motor learning (Etherton with oligonucleotide primer combinations: 5-AGC CCC GAC et al., 2009). Furthermore, Nrxn1α heterozygote mice have been CCA ACC TCA GGA CAG A -3 vs. 5-GGT AGG GAC AAG AGA shown to have sex-dependent increases in response to novelty and CAG CAA-3 (WT allele, 1 000 bp product), and 5-CGC CGC accelerated habituation to novel environments (Laarakker et al., TCC CGA TTC GCA GCG CAT-3 vs. 5-GGT AGG GAC AAG 2012). AGA CAG CAA-3 (KO allele, 700 bp product). Although genetic
Recommended publications
  • P.1.H.029. Abnormality of Social Behavior and Dysfunction of Autism
    P.1.h.029. Abnormality of social behavior and dysfunction of autism related gene expression developing under chronic social defeat stress in male mice Kudryavtseva N.N., Kovalenko I.L., Smagin D.A., Galyamina A.G., Babenko V.N. Federal Research Center, Institute of Cytology and Genetics of SB RAS, Novosibirsk, Russia The ability of people to communicate with each other is a necessary component of social behavior and the normal development of individuals living in a community. An apparent decline in sociability may be the result of a negative social environment or the development of neurological disorders, including autistic spectrum disorders. The behavior of these humans may be characterized by the impairment of socialization, low communication, restricted and repetitive behaviors. This study aimed to analyze changes in the social behaviors induced by daily social defeat stress in male mice and to study the involvement of autism associated genes in the process of the deterioration of social behaviors. sensory contact agonistic interactions aggressive defeated mice Methods.The sensory contact model [1] was mice used to generate repeated experience of social defeats in male mice of C57BL/6J strain. After three days of sensory contact the partition is removed for 10 min to allow agonistic interactions between males. Undoubted superiority of one of the partners is evident The collected brain samples were sequenced at JSC Genoanalytica (www.genoanalytica.ru, within 2-3 daily social encounters with the same Moscow, Russia), where the mRNA was extracted using the Dynabeads mRNA Purification Kit (Ambion, USA). cDNA libraries were constructed using NEBNext mRNA Library PrepReagent Set opponent.
    [Show full text]
  • Neurexin II Alpha (NRXN2) (NM 015080) Human Tagged ORF Clone Product Data
    OriGene Technologies, Inc. 9620 Medical Center Drive, Ste 200 Rockville, MD 20850, US Phone: +1-888-267-4436 [email protected] EU: [email protected] CN: [email protected] Product datasheet for RC219788 Neurexin II alpha (NRXN2) (NM_015080) Human Tagged ORF Clone Product data: Product Type: Expression Plasmids Product Name: Neurexin II alpha (NRXN2) (NM_015080) Human Tagged ORF Clone Tag: Myc-DDK Symbol: NRXN2 Vector: pCMV6-Entry (PS100001) E. coli Selection: Kanamycin (25 ug/mL) Cell Selection: Neomycin ORF Nucleotide >RC219788 representing NM_015080 Sequence: Red=Cloning site Blue=ORF Green=Tags(s) TTTTGTAATACGACTCACTATAGGGCGGCCGGGAATTCGTCGACTGGATCCGGTACCGAGGAGATCTGCC GCCGCGATCGCC ATGGCGTCCGGGAGCCGGTGGCGGCCGACACCGCCGCCGCTGCTGTTGCTGCTGCTGCTGGCGCTGGCGG CGCGCGCGGACGGCCTGGAGTTCGGCGGCGGCCCCGGGCAGTGGGCTCGCTACGCGCGCTGGGCGGGCGC GGCGAGCAGCGGCGAGCTCAGCTTCAGCCTGCGCACCAACGCCACGCGCGCGCTGCTGCTCTACCTGGAC GACGGCGGCGACTGCGACTTCCTGGAGCTGCTGCTGGTGGACGGCCGCCTGCGGCTGCGCTTCACGCTTT CGTGCGCCGAGCCGGCCACGCTGCAGCTGGACACGCCGGTGGCCGACGACCGCTGGCACATGGTGCTGCT GACCCGCGACGCGCGCCGCACGGCGCTGGCGGTGGACGGCGAGGCCCGCGCCGCCGAGGTGCGCTCCAAG CGGCGCGAGATGCAGGTGGCCAGCGACCTGTTCGTGGGCGGCATCCCGCCCGACGTGCGCCTCTCGGCGC TTACGCTGAGCACCGTCAAGTACGAGCCGCCCTTCCGCGGCCTCTTGGCCAACCTGAAGCTGGGCGAGCG GCCCCCCGCGCTGCTGGGCAGCCAGGGCCTGCGCGGCGCCACCGCCGACCCGCTGTGCGCGCCCGCGCGC AACCCCTGCGCCAACGGCGGCCTCTGCACCGTGCTGGCCCCCGGCGAGGTGGGCTGCGACTGCAGCCACA CGGGCTTCGGCGGCAAGTTCTGCAGCGAAGAGGAGCACCCCATGGAAGGTCCGGCTCACCTGACGTTAAA CAGCGAAGTAGGGTCCTTACTGTTCTCCGAGGGGGGGGCCGGGAGAGGAGGAGCCGGCGATGTGCACCAG CCAACAAAAGGCAAGGAGGAGTTTGTGGCGACCTTCAAAGGCAATGAGTTCTTCTGCTACGACCTGTCAC
    [Show full text]
  • Deletion of Α-Neurexin II Results in Autism-Related
    OPEN Citation: Transl Psychiatry (2014) 4, e484; doi:10.1038/tp.2014.123 www.nature.com/tp ORIGINAL ARTICLE Deletion of α-neurexin II results in autism-related behaviors in mice J Dachtler1, J Glasper2, RN Cohen1, JL Ivorra1, DJ Swiffen1, AJ Jackson1, MK Harte2, RJ Rodgers3 and SJ Clapcote1 Autism is a common and frequently disabling neurodevelopmental disorder with a strong genetic basis. Human genetic studies have discovered mutations disrupting exons of the NRXN2 gene, which encodes the synaptic adhesion protein α-neurexin II (Nrxn2α), in two unrelated individuals with autism, but a causal link between NRXN2 and the disorder remains unclear. To begin to test the hypothesis that Nrxn2α deficiency contributes to the symptoms of autism, we employed Nrxn2α knockout (KO) mice that genetically model Nrxn2α deficiency in vivo. We report that Nrxn2α KO mice displayed deficits in sociability and social memory when exposed to novel conspecifics. In tests of exploratory activity, Nrxn2α KO mice displayed an anxiety-like phenotype in comparison with wild-type littermates, with thigmotaxis in an open field, less time spent in the open arms of an elevated plus maze, more time spent in the enclosure of an emergence test and less time spent exploring novel objects. However, Nrxn2α KO mice did not exhibit any obvious changes in prepulse inhibition or in passive avoidance learning. Real-time PCR analysis of the frontal cortex and hippocampus revealed significant decreases in the mRNA levels of genes encoding proteins involved in both excitatory and inhibitory transmission. Quantification of protein expression revealed that Munc18-1, encoded by Stxbp1, was significantly decreased in the hippocampus of Nrxn2α KO mice, which is suggestive of deficiencies in presynaptic vesicular release.
    [Show full text]
  • Structures of Neurexophilin–Neurexin Complexes Reveal a Regulatory Mechanism of Alternative Splicing
    Article Structures of neurexophilin–neurexin complexes reveal a regulatory mechanism of alternative splicing Steven C Wilson1 , K Ian White1 , Qiangjun Zhou1, Richard A Pfuetzner1, Ucheor B Choi1, Thomas C Südhof1,2 & Axel T Brunger1,2,* Abstract Neurexins (Nrxns) are a family of presynaptic cell-adhesion mole- cules that are important for specifying the functional properties of Neurexins are presynaptic, cell-adhesion molecules that specify synapses (Su¨dhof, 2017). Through their interactions with various the functional properties of synapses via interactions with trans- binding partners, neurexins constitute part of a molecular code and synaptic ligands. Neurexins are extensively alternatively spliced at act as hub molecules to organize and regulate synaptic function six canonical sites that regulate multifarious ligand interactions, (Su¨dhof, 2017). but the structural mechanisms underlying alternative splicing- Neurexins are encoded by three genes (Nrxn1–3 in mice), each dependent neurexin regulation are largely unknown. Here, we of which contains multiple promoters to drive expression of determined high-resolution structures of the complex of neurex- Nrxn1a–3a, Nrxn1b–3b, and Nrxn1c. The extracellular sequences of ophilin-1 and the second laminin/neurexin/sex-hormone-binding a-neurexins contain six LNS domains (LNS1–LNS6) interspersed globulin domain (LNS2) of neurexin-1 and examined how alterna- with epidermal growth factor-like domains (EGFA–EGFC), followed tive splicing at splice site #2 (SS2) regulates the complex. Our data by a cysteine loop and a highly glycosylated stalk region (Fig 1A). reveal a unique, extensive, neurexophilin–neurexin binding inter- The b-neurexins include only the C-terminal region of a-neurexins face that extends the jelly-roll b-sandwich of LNS2 of neurexin-1 from the LNS6 domain onward.
    [Show full text]
  • Autism-Associated Mir-873 Regulates ARID1B, SHANK3 and NRXN2
    Lu et al. Translational Psychiatry (2020) 10:418 https://doi.org/10.1038/s41398-020-01106-8 Translational Psychiatry ARTICLE Open Access Autism-associated miR-873 regulates ARID1B, SHANK3 and NRXN2 involved in neurodevelopment Jing Lu 1, Yan Zhu 1, Sarah Williams2, Michelle Watts 3,MaryA.Tonta1, Harold A. Coleman1, Helena C. Parkington1 and Charles Claudianos 1,4 Abstract Autism spectrum disorders (ASD) are highly heritable neurodevelopmental disorders with significant genetic heterogeneity. Noncoding microRNAs (miRNAs) are recognised as playing key roles in development of ASD albeit the function of these regulatory genes remains unclear. We previously conducted whole-exome sequencing of Australian families with ASD and identified four novel single nucleotide variations in mature miRNA sequences. A pull-down transcriptome analysis using transfected SH-SY5Y cells proposed a mechanistic model to examine changes in binding affinity associated with a unique mutation found in the conserved ‘seed’ region of miR-873-5p (rs777143952: T > A). Results suggested several ASD-risk genes were differentially targeted by wild-type and mutant miR-873 variants. In the current study, a dual-luciferase reporter assay confirmed miR-873 variants have a 20-30% inhibition/dysregulation effect on candidate autism risk genes ARID1B, SHANK3 and NRXN2 and also confirmed the affected expression with qPCR. In vitro mouse hippocampal neurons transfected with mutant miR-873 showed less morphological complexity and enhanced sodium currents and excitatory neurotransmission compared to cells transfected with wild-type miR- 873. A second in vitro study showed CRISPR/Cas9 miR-873 disrupted SH-SY5Y neuroblastoma cells acquired a neuronal-like morphology and increased expression of ASD important genes ARID1B, SHANK3, ADNP2, ANK2 and CHD8.
    [Show full text]
  • Deciphering the Molecular Profile of Plaques, Memory Decline And
    ORIGINAL RESEARCH ARTICLE published: 16 April 2014 AGING NEUROSCIENCE doi: 10.3389/fnagi.2014.00075 Deciphering the molecular profile of plaques, memory decline and neuron loss in two mouse models for Alzheimer’s disease by deep sequencing Yvonne Bouter 1†,Tim Kacprowski 2,3†, Robert Weissmann4, Katharina Dietrich1, Henning Borgers 1, Andreas Brauß1, Christian Sperling 4, Oliver Wirths 1, Mario Albrecht 2,5, Lars R. Jensen4, Andreas W. Kuss 4* andThomas A. Bayer 1* 1 Division of Molecular Psychiatry, Georg-August-University Goettingen, University Medicine Goettingen, Goettingen, Germany 2 Department of Bioinformatics, Institute of Biometrics and Medical Informatics, University Medicine Greifswald, Greifswald, Germany 3 Department of Functional Genomics, Interfaculty Institute for Genetics and Functional Genomics, University Medicine Greifswald, Greifswald, Germany 4 Human Molecular Genetics, Department for Human Genetics of the Institute for Genetics and Functional Genomics, Institute for Human Genetics, University Medicine Greifswald, Ernst-Moritz-Arndt University Greifswald, Greifswald, Germany 5 Institute for Knowledge Discovery, Graz University of Technology, Graz, Austria Edited by: One of the central research questions on the etiology of Alzheimer’s disease (AD) is the Isidro Ferrer, University of Barcelona, elucidation of the molecular signatures triggered by the amyloid cascade of pathological Spain events. Next-generation sequencing allows the identification of genes involved in disease Reviewed by: Isidro Ferrer, University of Barcelona, processes in an unbiased manner. We have combined this technique with the analysis of Spain two AD mouse models: (1) The 5XFAD model develops early plaque formation, intraneu- Dietmar R. Thal, University of Ulm, ronal Ab aggregation, neuron loss, and behavioral deficits. (2)TheTg4–42 model expresses Germany N-truncated Ab4–42 and develops neuron loss and behavioral deficits albeit without plaque *Correspondence: formation.
    [Show full text]
  • Mycobacterium Tuberculosis-Induced Maternal Immune Activation Promotes Autism-Like Phenotype in Infected Mice Offspring
    International Journal of Environmental Research and Public Health Article Mycobacterium tuberculosis-Induced Maternal Immune Activation Promotes Autism-Like Phenotype in Infected Mice Offspring Wadzanai Manjeese 1 , Nontobeko E. Mvubu 2 , Adrie J. C. Steyn 2,3,4 and Thabisile Mpofana 1,* 1 Department of Human Physiology, School of Laboratory Medicine and Medical Sciences, College of Health Sciences, University of KwaZulu Natal, Durban 4001, South Africa; [email protected] 2 Discipline of Microbiology, School of Life Sciences, College of Agriculture, Engineering and Science, University of KwaZulu Natal, Durban 4001, South Africa; [email protected] (N.E.M.); [email protected] (A.J.C.S.) 3 Africa Health Research Institute, K-Rith Tower Building, Nelson Mandela School of Medicine, Durban 4001, South Africa 4 Department of Microbiology, University of Alabama, Birmingham, AL 35294, USA * Correspondence: [email protected] Abstract: The maternal system’s exposure to pathogens during pregnancy influences fetal brain development causing a persistent inflammation characterized by elevated pro-inflammatory cytokine levels in offspring. Mycobacterium tuberculosis (Mtb) is a global pathogen that causes tuberculosis, a pandemic responsible for health and economic burdens. Although it is known that maternal Citation: Manjeese, W.; Mvubu, N.E.; infections increase the risk of autism spectrum disorder (ASD), it is not known whether Mtb infection Steyn, A.J.C.; Mpofana, T. is sufficient to induce ASD associated behaviors, immune dysregulation and altered expression Mycobacterium tuberculosis-Induced of synaptic regulatory genes. The current study infected pregnant Balb/c mice with Mtb H37Rv Maternal Immune Activation and valproic acid (VPA) individually and in combination. Plasma cytokine profiles were measured Promotes Autism-Like Phenotype in Infected Mice Offspring.
    [Show full text]
  • Neurexin II Alpha (NRXN2) (NM 138732) Human Untagged Clone Product Data
    OriGene Technologies, Inc. 9620 Medical Center Drive, Ste 200 Rockville, MD 20850, US Phone: +1-888-267-4436 [email protected] EU: [email protected] CN: [email protected] Product datasheet for SC306070 Neurexin II alpha (NRXN2) (NM_138732) Human Untagged Clone Product data: Product Type: Expression Plasmids Product Name: Neurexin II alpha (NRXN2) (NM_138732) Human Untagged Clone Tag: Tag Free Symbol: NRXN2 Vector: pCMV6 series Fully Sequenced ORF: >NCBI ORF sequence for NM_138732, the custom clone sequence may differ by one or more nucleotides ATGGCGTCCGGGAGCCGGTGGCGGCCGACACCGCCGCCGCTGCTGTTGCTGCTGCTGCTG GCGCTGGCGGCGCGCGCGGACGGCCTGGAGTTCGGCGGCGGCCCCGGGCAGTGGGCTCGC TACGCGCGCTGGGCGGGCGCGGCGAGCAGCGGCGAGCTCAGCTTCAGCCTGCGCACCAAC GCCACGCGCGCGCTGCTGCTCTACCTGGACGACGGCGGCGACTGCGACTTCCTGGAGCTG CTGCTGGTGGACGGCCGCCTGCGGCTGCGCTTCACGCTTTCGTGCGCCGAGCCGGCCACG CTGCAGCTGGACACGCCGGTGGCCGACGACCGCTGGCACATGGTGCTGCTGACCCGCGAC GCGCGCCGCACGGCGCTGGCGGTGGACGGCGAGGCCCGCGCCGCCGAGGTGCGCTCCAAG CGGCGCGAGATGCAGGTGGCCAGCGACCTGTTCGTGGGCGGCATCCCGCCCGACGTGCGC CTCTCGGCGCTTACGCTGAGCACCGTCAAGTACGAGCCGCCCTTCCGCGGCCTCTTGGCC AACCTGAAGCTGGGCGAGCGGCCCCCCGCGCTGCTGGGCAGCCAGGGCCTGCGCGGCGCC ACCGCCGACCCGCTGTGCGCGCCCGCGCGCAACCCCTGCGCCAACGGCGGCCTCTGCACC GTGCTGGCCCCCGGCGAGGTGGGCTGCGACTGCAGCCACACGGGCTTCGGCGGCAAGTTC TGCAGCGAAGAGGAGCACCCCATGGAAGGTCCGGCTCACCTGACGTTAAACAGCGAAGGC AAGGAGGAGTTTGTGGCGACCTTCAAAGGCAATGAGTTCTTCTGCTACGACCTGTCACAC AACCCCATCCAGAGCAGCACTGATGAGATCACACTGGCCTTCCGCACCCTGCAACGCAAC GGCCTGATGCTGCATACAGGCAAGTCGGCCGACTACGTCAACCTGTCCCTCAAGTCTGGG GCTGTCTGGCTGGTCATCAACCTAGGCTCAGGTGCCTTCGAGGCCCTTGTGGAACCCGTC
    [Show full text]
  • Cartography of Neurexin Alternative Splicing Mapped by Single
    Cartography of neurexin alternative splicing mapped PNAS PLUS by single-molecule long-read mRNA sequencing Barbara Treutleina,b,1, Ozgun Gokcec,1, Stephen R. Quakea,b,d,2, and Thomas C. Südhofc,d,2 Departments of aBioengineering and cMolecular and Cellular Physiology, School of Medicine, bDepartment of Applied Physics, and dHoward Hughes Medical Institute, Stanford University, Stanford, CA 94305 Contributed by Thomas C. Südhof, February 24, 2014 (sent for review January 24, 2014) Neurexins are evolutionarily conserved presynaptic cell-adhesion α-andβ-neurexins contain different extracellular sequences molecules that are essential for normal synapse formation and but identical transmembrane regions and short cytoplasmic tails. synaptic transmission. Indirect evidence has indicated that exten- Specifically, the extracellular sequences of α-neurexins are sive alternative splicing of neurexin mRNAs may produce hundreds composed of six LNS (laminin-α, neurexin, sex hormone-binding if not thousands of neurexin isoforms, but no direct evidence for globulin) domains with three interspersed EGF-like repeats such diversity has been available. Here we use unbiased long-read followed by an O-linked sugar attachment sequence and a con- sequencing of full-length neurexin (Nrxn)1α, Nrxn1β,Nrxn2β, served cysteine loop sequence (8, 15). In contrast, the extracel- Nrxn3α, and Nrxn3β mRNAs to systematically assess how many lular sequences of β-neurexins comprise a short β-neurexin– sites of alternative splicing are used in neurexins with a significant specific sequence, and then splice into the sixth LNS domain of frequency, and whether alternative splicing events at these sites α-neurexins, from which point on β-neurexins are identical to are independent of each other.
    [Show full text]
  • An Integrative Analysis of Non-Coding Regulatory DNA Variations Associated with Autism Spectrum Disorder
    Molecular Psychiatry (2019) 24:1707–1719 https://doi.org/10.1038/s41380-018-0049-x ARTICLE An integrative analysis of non-coding regulatory DNA variations associated with autism spectrum disorder 1,2 2,3,4 2 2 1 Sarah M. Williams ● Joon Yong An ● Janette Edson ● Michelle Watts ● Valentine Murigneux ● 5,6 7 8 1 Andrew J. O. Whitehouse ● Colin J. Jackson ● Mark A. Bellgrove ● Alexandre S. Cristino ● Charles Claudianos 2,9 Received: 15 October 2016 / Revised: 16 January 2018 / Accepted: 19 February 2018 / Published online: 27 April 2018 © The Author(s) 2018. This article is published with open access Abstract A number of genetic studies have identified rare protein-coding DNA variations associated with autism spectrum disorder (ASD), a neurodevelopmental disorder with significant genetic etiology and heterogeneity. In contrast, the contributions of functional, regulatory genetic variations that occur in the extensive non-protein-coding regions of the genome remain poorly understood. Here we developed a genome-wide analysis to identify the rare single nucleotide variants (SNVs) that occur in non-coding regions and determined the regulatory function and evolutionary conservation of these variants. Using publicly fi 1234567890();,: 1234567890();,: available datasets and computational predictions, we identi ed SNVs within putative regulatory regions in promoters, transcription factor binding sites, and microRNA genes and their target sites. Overall, we found that the regulatory variants in ASD cases were enriched in ASD-risk genes and genes involved in fetal neurodevelopment. As with previously reported coding mutations, we found an enrichment of the regulatory variants associated with dysregulation of neurodevelopmental and synaptic signaling pathways.
    [Show full text]
  • 1 a Novel Function for Neurexin and Neuroligin
    A NOVEL FUNCTION FOR NEUREXIN AND NEUROLIGIN FAMILY MEMBERS IN PROMOTING NEURITE OUTGROWTH Dana A. Murchison Department of Neurology and Neurosurgery McGill University, Montreal August, 2009 A thesis submitted in partial fulfillment of the requirements of a Master’s degree © Dana A. Murchison, 2009 1 Library and Archives Bibliothèque et Canada Archives Canada Published Heritage Direction du Branch Patrimoine de l’édition 395 Wellington Street 395, rue Wellington Ottawa ON K1A 0N4 Ottawa ON K1A 0N4 Canada Canada Your file Votre référence ISBN: 978-0-494-66171-0 Our file Notre référence ISBN: 978-0-494-66171-0 NOTICE: AVIS: The author has granted a non- L’auteur a accordé une licence non exclusive exclusive license allowing Library and permettant à la Bibliothèque et Archives Archives Canada to reproduce, Canada de reproduire, publier, archiver, publish, archive, preserve, conserve, sauvegarder, conserver, transmettre au public communicate to the public by par télécommunication ou par l’Internet, prêter, telecommunication or on the Internet, distribuer et vendre des thèses partout dans le loan, distribute and sell theses monde, à des fins commerciales ou autres, sur worldwide, for commercial or non- support microforme, papier, électronique et/ou commercial purposes, in microform, autres formats. paper, electronic and/or any other formats. The author retains copyright L’auteur conserve la propriété du droit d’auteur ownership and moral rights in this et des droits moraux qui protège cette thèse. Ni thesis. Neither the thesis nor la thèse ni des extraits substantiels de celle-ci substantial extracts from it may be ne doivent être imprimés ou autrement printed or otherwise reproduced reproduits sans son autorisation.
    [Show full text]
  • Impact of Exposures to Persistent Endocrine Disrupting Compounds on the Sperm Methylome in Regions Associated with Neurodevelopmental Disorders
    medRxiv preprint doi: https://doi.org/10.1101/2021.02.21.21252162; this version posted February 23, 2021. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted medRxiv a license to display the preprint in perpetuity. All rights reserved. No reuse allowed without permission. Impact of exposures to persistent endocrine disrupting compounds on the sperm methylome in regions associated with neurodevelopmental disorders Angela G. Maggio1, Henry T. Shu1,2, Benjamin I. Laufer3, Hyeyeon Hwang3, Chongfeng Bi1, Yinglei Lai4, Janine M. LaSalle3, and Valerie W. Hu1 1Dept. of Biochemistry and Molecular Medicine; The George Washington University School of Medicine and Health Sciences; Washington, DC 20037 USA 2 The Johns Hopkins University, School of Medicine; 733 N Broadway St, Baltimore, MD 21205 USA 3 Medical Microbiology and Immunology, Genome Center, MIND Institute, Perinatal Origins of Disparities Center, and Environmental Health Sciences Center, UC Davis School of Medicine, Davis, CA 95616 USA 4Dept. of Statistics, The George Washington University, Washington, DC 20052 USA Address correspondence to: Valerie Hu, Department of Biochemistry and Molecular Medicine, The George Washington University School of Medicine and Health Sciences, 2300 Eye St., NW, Washington, DC 20037, USA. Telephone: (202) 994-8431. Email: [email protected] The authors declare they have no actual or potential competing financial interests. Keywords: DNA methylation, sperm, Faroe Islands, endocrine disruptors, autism 1 NOTE: This preprint reports new research that has not been certified by peer review and should not be used to guide clinical practice. medRxiv preprint doi: https://doi.org/10.1101/2021.02.21.21252162; this version posted February 23, 2021.
    [Show full text]