Atmospheric Modelling and HPC
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Red Hat Enterprise Linux 6 Developer Guide
Red Hat Enterprise Linux 6 Developer Guide An introduction to application development tools in Red Hat Enterprise Linux 6 Dave Brolley William Cohen Roland Grunberg Aldy Hernandez Karsten Hopp Jakub Jelinek Developer Guide Jeff Johnston Benjamin Kosnik Aleksander Kurtakov Chris Moller Phil Muldoon Andrew Overholt Charley Wang Kent Sebastian Red Hat Enterprise Linux 6 Developer Guide An introduction to application development tools in Red Hat Enterprise Linux 6 Edition 0 Author Dave Brolley [email protected] Author William Cohen [email protected] Author Roland Grunberg [email protected] Author Aldy Hernandez [email protected] Author Karsten Hopp [email protected] Author Jakub Jelinek [email protected] Author Jeff Johnston [email protected] Author Benjamin Kosnik [email protected] Author Aleksander Kurtakov [email protected] Author Chris Moller [email protected] Author Phil Muldoon [email protected] Author Andrew Overholt [email protected] Author Charley Wang [email protected] Author Kent Sebastian [email protected] Editor Don Domingo [email protected] Editor Jacquelynn East [email protected] Copyright © 2010 Red Hat, Inc. and others. The text of and illustrations in this document are licensed by Red Hat under a Creative Commons Attribution–Share Alike 3.0 Unported license ("CC-BY-SA"). An explanation of CC-BY-SA is available at http://creativecommons.org/licenses/by-sa/3.0/. In accordance with CC-BY-SA, if you distribute this document or an adaptation of it, you must provide the URL for the original version. Red Hat, as the licensor of this document, waives the right to enforce, and agrees not to assert, Section 4d of CC-BY-SA to the fullest extent permitted by applicable law. -
CCPP Technical Documentation Release V3.0.0
CCPP Technical Documentation Release v3.0.0 J. Schramm, L. Bernardet, L. Carson, G. Firl, D. Heinzeller, L. Pan, and M. Zhang Jun 17, 2019 For referencing this document please use: Schramm, J., L. Bernardet, L. Carson, G. Firl, D. Heinzeller, L. Pan, and M. Zhang, 2019. CCPP Technical Documentation Release v3.0.0. 91pp. Available at https://dtcenter.org/GMTB/v3.0/ccpp_tech_guide.pdf. CONTENTS 1 CCPP Overview 1 1.1 How to Use this Document........................................4 2 CCPP-Compliant Physics Parameterizations7 2.1 General Rules..............................................8 2.2 Input/output Variable (argument) Rules.................................9 2.3 Coding Rules............................................... 10 2.4 Parallel Programming Rules....................................... 11 2.5 Scientific Documentation Rules..................................... 12 2.5.1 Doxygen Comments and Commands.............................. 12 2.5.2 Doxygen Documentation Style................................. 13 2.5.3 Doxygen Configuration..................................... 18 2.5.4 Using Doxygen......................................... 20 3 CCPP Configuration and Build Options 23 4 Constructing Suites 27 4.1 Suite Definition File........................................... 27 4.1.1 Groups............................................. 27 4.1.2 Subcycling........................................... 27 4.1.3 Order of Schemes........................................ 28 4.2 Interstitial Schemes........................................... 28 4.3 SDF Examples............................................. -
EPICS Application Developer's Guide
1 EPICS Application Developer’s Guide EPICS Base Release 3.15.0.2 17 October 2014 Andrew N. Johnson, Janet B. Anderson, Martin R. Kraimer (Argonne National Laboratory) W. Eric Norum (Lawrence Berkeley National Laboratory) Jeffrey O. Hill (Los Alamos National Laboratory) Ralph Lange, Benjamin Franksen (Helmholtz-Zentrum Berlin) Peter Denison (Diamond Light Source) 2 Contents EPICS Applications Developer’s Guide1 Table of Contents 7 1 Introduction 9 1.1 Overview.................................................9 1.2 Acknowledgments............................................ 11 2 Getting Started 13 2.1 Introduction................................................ 13 2.2 Example IOC Application........................................ 13 2.3 Channel Access Host Example...................................... 15 2.4 iocsh.................................................... 16 2.5 Building IOC components........................................ 16 2.6 makeBaseApp.pl............................................. 19 2.7 vxWorks boot parameters......................................... 22 2.8 RTEMS boot procedure.......................................... 23 3 EPICS Overview 25 3.1 What is EPICS?.............................................. 25 3.2 Basic Attributes.............................................. 26 3.3 IOC Software Components........................................ 26 3.4 Channel Access.............................................. 28 3.5 OPI Tools................................................. 30 3.6 EPICS Core Software.......................................... -
Studying the Evolution of Build Systems
Studying the Evolution of Build Systems by Shane McIntosh A thesis submitted to the School of Computing in conformity with the requirements for the degree of Master of Science Queen's University Kingston, Ontario, Canada January 2011 Copyright c Shane McIntosh, 2011 Abstract As a software project ages, its source code is improved by refining existing features, adding new ones, and fixing bugs. Software developers can attest that such changes often require accompanying changes to the infrastructure that converts source code into executable software packages, i.e., the build system. Intuition suggests that these build system changes slow down development progress by diverting developer focus away from making improvements to the source code. While source code evolution and maintenance is studied extensively, there is little work that focuses on the build system. In this thesis, we empirically study the static and dynamic evolution of build system complexity in proprietary and open source projects. To help counter potential bias of the study, 13 projects with different sizes, domains, build technologies, and release strategies were selected for examination, including Eclipse, Linux, Mozilla, and JBoss. We find that: (1) similar to Lehman's first law of software evolution, Java build system specifications tend to grow unless explicit effort is invested into restructuring them, (2) the build system accounts for up to 31% of the code files in a project, and (3) up to 27% of source code related development tasks require build maintenance. Project managers should include build maintenance effort of this magnitude in their project planning and budgeting estimations. i Co-authorship Earlier versions of the work in this thesis were published as listed below: 1) The Evolution of ANT Build Systems (Chapter 4) Shane McIntosh, Bram Adams, and Ahmed E. -
Impact of Different Compilers and Build Types on Geant4 Simulation Execution Time
EPJ Web of Conferences 245, 05037 (2020) https://doi.org/10.1051/epjconf/202024505037 CHEP 2019 Impact of different compilers and build types on Geant4 simulation execution time Caterina Marcon1;∗, Oxana Smirnova1, and Servesh Muralidharan2 1Lunds Universitet, Fysiska Institutionen, Box 118, SE - 221 00 Lund, Sweden 2CERN, CH-1211 Geneva 23, Switzerland Abstract. Experimental observations and advanced computer simulations in High Energy Physics (HEP) paved the way for the recent discoveries at the Large Hadron Collider (LHC) at CERN. Currently, Monte Carlo simulations account for a very significant amount of computational resources of the World- wide LHC Computing Grid (WLCG). The current growth in available com- puting performance will not be enough to fulfill the expected demand for the forthcoming High Luminosity run (HL-LHC). More efficient simulation codes are therefore required. This study focuses on evaluating the impact of different build methods on the simulation execution time. The Geant4 toolkit, the standard simulation code for the LHC experiments, consists of a set of libraries which can be either dynam- ically or statically linked to the simulation executable. Dynamic libraries are currently the preferred build method. In this work, three versions of the GCC compiler, namely 4.8.5, 6.2.0 and 8.2.0 have been used. In addition, a comparison between four optimization levels (Os, O1, O2 and O3) has also been performed. Static builds for all the GCC versions considered, exhibit a reduction in ex- ecution times of about 10%. Switching to newer GCC version results in an average of 30% improvement in the execution time regardless of the build type. -
CCPP Technical Documentation Release V4.0.0
CCPP Technical Documentation Release v4.0.0 J. Schramm, L. Bernardet, L. Carson, G. Firl, D. Heinzeller, L. Pan, and M. Zhang Mar 26, 2020 For referencing this document please use: Schramm, J., L. Bernardet, L. Carson, G. Firl, D. Heinzeller, L. Pan, and M. Zhang, 2020. CCPP Technical Documentation Release v4.0.0. Available at https://dtcenter.org/GMTB/v4.0/ccpp_tech_guidev4.0.pdf. CONTENTS 1 CCPP Overview 1 1.1 How to Use this Document........................................4 2 CCPP-Compliant Physics Parameterizations7 2.1 General Rules..............................................8 2.2 Metadata Rules..............................................9 2.3 Input/output Variable (argument) Rules................................. 11 2.4 Coding Rules............................................... 12 2.5 Parallel Programming Rules....................................... 12 2.6 Scientific Documentation Rules..................................... 13 2.6.1 Doxygen Comments and Commands.............................. 14 2.6.2 Doxygen Documentation Style................................. 14 2.6.3 Doxygen Configuration..................................... 19 2.6.4 Including metadata information................................ 21 2.6.5 Using Doxygen......................................... 22 3 CCPP Configuration and Build Options 23 4 Constructing Suites 27 4.1 Suite Definition File........................................... 27 4.1.1 Groups............................................. 27 4.1.2 Subcycling........................................... 27 4.1.3 Order -
Boost.Build V2 User Manual
Boost.Build V2 User Manual XML to PDF by RenderX XEP XSL-FO Formatter, visit us at http://www.renderx.com/ Boost.Build V2 User Manual Copyright © 2006-2009 Vladimir Prus Distributed under the Boost Software License, Version 1.0. (See accompanying ®le LICENSE_1_0.txt or copy at http://www.boost.org/LICENSE_1_0.txt) XML to PDF by RenderX XEP XSL-FO Formatter, visit us at http://www.renderx.com/ Table of Contents How to use this document ........................................................................................................................................ 1 Installation ............................................................................................................................................................ 2 Tutorial ................................................................................................................................................................ 3 Hello, world .................................................................................................................................................. 4 Properties ..................................................................................................................................................... 5 Project Hierarchies ......................................................................................................................................... 7 Dependent Targets ......................................................................................................................................... -
Laurie Carson
CCPP Training College Park, MD, March 12-13, 2019 Building NEMSfv3gfs with CCPP Laurie Carson Global Model Test Bed Building NEMSfv3gfs with CCPP Code repositories and how to get the code Types of builds System requirements, compilers, libraries How-to instructions (see also: Practical Session exercises) 2 Code repositories The repository structure for CCPP development in NEMSfv3gfs mirrors the Vlab repository structure, with the addition of the CCPP repositories FV3 Repository (GMTB development version) Branch name https://github.com/NCAR/NEMSfv3gfs gmtb/ccpp FMS https://github.com/NCAR/FV3 gmtb/ccpp NEMSfv3gfs NEMS https://github.com/NCAR/ccpp-physics master https://github.com/NCAR/ccpp-framework master ccpp/physics https://github.com/NCAR/NEMS gmtb/ccpp https://github.com/NCAR/FMS GFS-FMS ccpp/framework 3 How to get the code The authoritative repositories are located on github.com in the NCAR organizational space Some repositories are private (NEMSfv3gfs, FV3, NEMS) Some repositories are public (ccpp-physics, ccpp-framework, FMS) Send a request to [email protected] to request access to the private repositories Clone a local copy of the repository to begin working, including submodules git clone –-recursive -b emc_training_march_2019 https://github.com/NCAR/NEMSfv3gfs 4 Types of builds Using FV3GFS as the host model, there are several modes of operation Non-CCPP:The code is compiled without CCPP enabled and matches the official NEMSfv3gfs codebase in VLab. Hybrid CCPP:The code is compiled with CCPP enabled and allows users to combine non-CCPP physics and CCPP-compliant physics. Standalone CCPP (non-Hybrid): The code is compiled with CCPP enabled and restricted to CCPP-compliant physics. -
Libflame the Complete Reference ( Version 5.1.0-56 )
libflame The Complete Reference ( version 5.1.0-56 ) Field G. Van Zee The University of Texas at Austin Copyright c 2011 by Field G. Van Zee. 10 9 8 7 6 5 4 3 2 1 All rights reserved. No part of this book may be reproduced, stored, or transmitted in any manner without the written permission of the publisher. For information, contact either of the authors. No warranties, express or implied, are made by the publisher, authors, and their employers that the programs contained in this volume are free of error. They should not be relied on as the sole basis to solve a problem whose incorrect solution could result in injury to person or property. If the programs are employed in such a manner, it is at the user's own risk and the publisher, authors, and their employers disclaim all liability for such misuse. Trademarked names may be used in this book without the inclusion of a trademark symbol. These names are used in an editorial context only; no infringement of trademark is intended. Library of Congress Cataloging-in-Publication Data not yet available Draft, November 2008 This \Draft Edition" allows this material to be used while we sort out through what mechanism we will publish the book. Contents 1. Introduction 1 1.1. What's provided...........................................1 1.2. What's not provided.........................................6 1.3. Acknowledgments...........................................7 2. Setup for GNU/Linux and UNIX9 2.1. Before obtaining libflame .....................................9 2.1.1. System software requirements................................9 2.1.2. System hardware support.................................. 10 2.1.3. -
Vxworks Application Programmer's Guide
VxWorks Application Programmer's Guide VxWorks® APPLICATION PROGRAMMER’S GUIDE 6.2 Copyright © 2005 Wind River Systems, Inc. All rights reserved. No part of this publication may be reproduced or transmitted in any form or by any means without the prior written permission of Wind River Systems, Inc. Wind River, the Wind River logo, Tornado, and VxWorks are registered trademarks of Wind River Systems, Inc. Any third-party trademarks referenced are the property of their respective owners. For further information regarding Wind River trademarks, please see: http://www.windriver.com/company/terms/trademark.html This product may include software licensed to Wind River by third parties. Relevant notices (if any) are provided in your product installation at the following location: installDir/product_name/3rd_party_licensor_notice.pdf. Wind River may refer to third-party documentation by listing publications or providing links to third-party Web sites for informational purposes. Wind River accepts no responsibility for the information provided in such third-party documentation. Corporate Headquarters Wind River Systems, Inc. 500 Wind River Way Alameda, CA 94501-1153 U.S.A. toll free (U.S.): (800) 545-WIND telephone: (510) 748-4100 facsimile: (510) 749-2010 For additional contact information, please visit the Wind River URL: http://www.windriver.com For information on how to contact Customer Support, please visit the following URL: http://www.windriver.com/support VxWorks Application Programmer’s Guide, 6.2 9 Oct 05 Part #: DOC-15673-ZD-00 Contents -
Red Hat Enterprise Linux 7 Developer Guide
Red Hat Enterprise Linux 7 Developer Guide An introduction to application development tools in Red Hat Enterprise Linux 7 Jacquelynn East Don Domingo Robert Krátký Red Hat Enterprise Linux 7 Developer Guide An introduction to application development tools in Red Hat Enterprise Linux 7 Jacquelynn East Red Hat Customer Content Services [email protected] Don Domingo Red Hat Customer Content Services [email protected] Robert Krátký Red Hat Customer Content Services [email protected] Legal Notice Copyright © 2015 Red Hat, Inc. and others. This document is licensed by Red Hat under the Creative Commons Attribution-ShareAlike 3.0 Unported License. If you distribute this document, or a modified version of it, you must provide attribution to Red Hat, Inc. and provide a link to the original. If the document is modified, all Red Hat trademarks must be removed. Red Hat, as the licensor of this document, waives the right to enforce, and agrees not to assert, Section 4d of CC-BY-SA to the fullest extent permitted by applicable law. Red Hat, Red Hat Enterprise Linux, the Shadowman logo, JBoss, MetaMatrix, Fedora, the Infinity Logo, and RHCE are trademarks of Red Hat, Inc., registered in the United States and other countries. Linux ® is the registered trademark of Linus Torvalds in the United States and other countries. Java ® is a registered trademark of Oracle and/or its affiliates. XFS ® is a trademark of Silicon Graphics International Corp. or its subsidiaries in the United States and/or other countries. MySQL ® is a registered trademark of MySQL AB in the United States, the European Union and other countries. -
Ant Build Maintenance with Formiga Ryan Hardt University of Wisconsin-Milwaukee
University of Wisconsin Milwaukee UWM Digital Commons Theses and Dissertations May 2014 Ant Build Maintenance with Formiga Ryan Hardt University of Wisconsin-Milwaukee Follow this and additional works at: https://dc.uwm.edu/etd Part of the Computer Sciences Commons Recommended Citation Hardt, Ryan, "Ant Build Maintenance with Formiga" (2014). Theses and Dissertations. 498. https://dc.uwm.edu/etd/498 This Dissertation is brought to you for free and open access by UWM Digital Commons. It has been accepted for inclusion in Theses and Dissertations by an authorized administrator of UWM Digital Commons. For more information, please contact [email protected]. ANT BUILD MAINTENANCE WITH FORMIGA by Ryan Hardt A Dissertation Submitted in Partial Fulfillment of the Requirements for the Degree of Doctor of Philosophy in Engineering at The University of Wisconsin-Milwaukee May 2014 ABSTRACT ANT BUILD MAINTENANCE WITH FORMIGA by Ryan Hardt The University of Wisconsin-Milwaukee, 2014 Under the Supervision of Professor Ethan V. Munson A build system produces a set of deliverables from a software project's source code and resources. \Build maintenance" refers to the changes made to the build system as a software project evolves over time. It has been shown to impose a significant overhead on overall development costs, in part because changes to source code often require parallel changes in the build system. However, little tool support exists to assist developers with build maintenance, particularly for those changes that must accompany changes to the source code. Formiga is a build maintenance and de- pendency discovery tool for the Ant build system.