Cinnamomum Mabberleyi, a New Species from Vietnam and Laos
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Evolutionary Comparisons of the Chloroplast Genome in Lauraceae and Insights Into Loss Events in the Magnoliids
GBE Evolutionary Comparisons of the Chloroplast Genome in Lauraceae and Insights into Loss Events in the Magnoliids Yu Song1,2,†,Wen-BinYu1,2,†, Yunhong Tan1,2,†, Bing Liu3,XinYao1,JianjunJin4, Michael Padmanaba1, Jun-Bo Yang4,*, and Richard T. Corlett1,2,* 1Center for Integrative Conservation, Xishuangbanna Tropical Botanical Garden, Chinese Academy of Sciences, Mengla, China 2Southeast Asia Biodiversity Research Institute, Chinese Academy of Sciences, Yezin, Nay Pyi Taw, Myanmar 3State Key Laboratory of Systematic and Evolutionary Botany, Institute of Botany, Chinese Academy of Sciences, Beijing, China 4Germplasm Bank of Wild Species, Kunming Institute of Botany, Chinese Academy of Sciences, Kunming, China *Corresponding authors: E-mails: [email protected]; [email protected]. †These authors contributed equally to this work. Accepted: September 1, 2017 Data deposition: This project has been deposited at GenBank of NCBI under the accession number MF939337 to MF939351. Abstract Available plastomes of the Lauraceae show similar structure and varied size, but there has been no systematic comparison across the family. In order to understand the variation in plastome size and structure in the Lauraceae and related families of magnoliids, we here compare 47 plastomes, 15 newly sequenced, from 27 representative genera. We reveal that the two shortest plastomes are in the parasitic Lauraceae genus Cassytha, with lengths of 114,623 (C. filiformis) and 114,963 bp (C. capillaris), and that they have lost NADH dehydrogenase (ndh) genes in the large single-copy region and one entire copy of the inverted repeat (IR) region. The plastomes of the core Lauraceae group, with lengths from 150,749 bp (Nectandra angustifolia) to 152,739 bp (Actinodaphne trichocarpa), have lost trnI-CAU, rpl23, rpl2,afragmentofycf2, and their intergenic regions in IRb region, whereas the plastomes of the basal Lauraceae group, with lengths from 157,577 bp (Eusideroxylon zwageri) to 158,530 bp (Beilschmiedia tungfangen- sis), have lost rpl2 in IRa region. -
WIAD CONSERVATION a Handbook of Traditional Knowledge and Biodiversity
WIAD CONSERVATION A Handbook of Traditional Knowledge and Biodiversity WIAD CONSERVATION A Handbook of Traditional Knowledge and Biodiversity Table of Contents Acknowledgements ...................................................................................................................... 2 Ohu Map ...................................................................................................................................... 3 History of WIAD Conservation ...................................................................................................... 4 WIAD Legends .............................................................................................................................. 7 The Story of Julug and Tabalib ............................................................................................................... 7 Mou the Snake of A’at ........................................................................................................................... 8 The Place of Thunder ........................................................................................................................... 10 The Stone Mirror ................................................................................................................................. 11 The Weather Bird ................................................................................................................................ 12 The Story of Jelamanu Waterfall ......................................................................................................... -
Cassytha) and Insights Into the Plastid Phylogenomics of Lauraceae
GBE Plastome Evolution in the Sole Hemiparasitic Genus Laurel Dodder (Cassytha) and Insights into the Plastid Phylogenomics of Lauraceae Chung-Shien Wu1,†, Ting-Jen Wang1,†,Chia-WenWu1, Ya-Nan Wang2, and Shu-Miaw Chaw1,* 1Biodiversity Research Center, Academia Sinica, Taipei 11529, Taiwan 2School of Forestry and Resource Conservation, Nation Taiwan University, Taipei 10617, Taiwan *Corresponding author: E-mail: [email protected]. †These authors contributed equally to this work. Accepted: September 6, 2017 Data deposition: This project has been deposited at DDBJ under the accession numbers LC210517, LC212965, LC213014, and LC228240. Abstract To date, little is known about the evolution of plastid genomes (plastomes) in Lauraceae. As one of the top five largest families in tropical forests, the Lauraceae contain many species that are important ecologically and economically. Lauraceous species also provide wonderful materials to study the evolutionary trajectory in response to parasitism because they contain both nonparasitic and parasitic species. This study compared the plastomes of nine Lauraceous species, including the sole hemiparasitic and herbaceous genus Cassytha (laurel dodder; here represented by Cassytha filiformis). We found differential contractions of the canonical inverted repeat (IR), resulting in two IR types present in Lauraceae. These two IR types reinforce Cryptocaryeae and Neocinnamomum— Perseeae–Laureae as two separate clades. Our data reveal several traits unique to Cas. filiformis, including loss of IRs, loss or pseudogenization of 11 ndh and rpl23 genes, richness of repeats, and accelerated rates of nucleotide substitutions in protein- coding genes. Although Cas. filiformis is low in chlorophyll content, our analysis based on dN/dS ratios suggests that both its plastid house-keeping and photosynthetic genes are under strong selective constraints. -
Camphor Laurels' Ecological Management & Restoration
emr_399.fm Page 88 Wednesday, July 9, 2008 8:54 AM FEATURE doi: 10.1111/j.1442-8903.2008.00399.x PotentialBlackwell Publishing Asia value of weedy regrowth for rainforest restoration By John Kanowski, Carla P. Catterall and Wendy Neilan Weeds are (usually justifiably) considered ‘bad’! But what about when weedy regrowth supports native species and facilitates the conversion of retired pasture back to functioning rainforest? Figure 1. The Topknot Pigeon (Lopholaimus antarcticus), a rainforest pigeon which feeds on the fruit of Camphor Laurel (Cinnamomum camphora) in north-east New South Wales, Australia. The Topknot Pigeon forages in large flocks and can travel tens of kilometres daily. For these reasons, it is an important long-distance disperser of rainforest plants to stands of Camphor Laurel (as well as being a disperser of Camphor Laurel to other forest types). (Photo: Terry M. Reis.) Introduction and subtropical Australia, many small restoration plantings have been estab- ustralian rainforests have been the lished, mostly utilizing a diverse range Afocus of much conservation and of locally occurring species, planted at restoration effort in the past few high densities (Kooyman 1996; Free- decades. Governments, community body 2007). Research has shown that John Kanowski is a Research Fellow and groups and individuals have invested these restoration plantings can develop Carla Catterall is an Associate Professor in the tens of millions of dollars to rehabi- a rainforest-like structure and support School of Environment, Griffith University (Nathan, litate degraded remnants and replant a moderate diversity of rainforest fauna Qld 4111, Australia; Tel. +61 (0) 7 3735 3823; rainforest trees in tropical and subtropical (Fig. -
Phylogeny and Historical Biogeography of Lauraceae
PHYLOGENY Andre'S. Chanderbali,2'3Henk van der AND HISTORICAL Werff,3 and Susanne S. Renner3 BIOGEOGRAPHY OF LAURACEAE: EVIDENCE FROM THE CHLOROPLAST AND NUCLEAR GENOMES1 ABSTRACT Phylogenetic relationships among 122 species of Lauraceae representing 44 of the 55 currentlyrecognized genera are inferredfrom sequence variation in the chloroplast and nuclear genomes. The trnL-trnF,trnT-trnL, psbA-trnH, and rpll6 regions of cpDNA, and the 5' end of 26S rDNA resolved major lineages, while the ITS/5.8S region of rDNA resolved a large terminal lade. The phylogenetic estimate is used to assess morphology-based views of relationships and, with a temporal dimension added, to reconstructthe biogeographic historyof the family.Results suggest Lauraceae radiated when trans-Tethyeanmigration was relatively easy, and basal lineages are established on either Gondwanan or Laurasian terrains by the Late Cretaceous. Most genera with Gondwanan histories place in Cryptocaryeae, but a small group of South American genera, the Chlorocardium-Mezilauruls lade, represent a separate Gondwanan lineage. Caryodaphnopsis and Neocinnamomum may be the only extant representatives of the ancient Lauraceae flora docu- mented in Mid- to Late Cretaceous Laurasian strata. Remaining genera place in a terminal Perseeae-Laureae lade that radiated in Early Eocene Laurasia. Therein, non-cupulate genera associate as the Persea group, and cupuliferous genera sort to Laureae of most classifications or Cinnamomeae sensu Kostermans. Laureae are Laurasian relicts in Asia. The Persea group -
Cinnamomum Cassia Bark Produced by Solid‑State Fermentation with Phellinus Baumii Has the Potential to Alleviate Atopic Dermatitis‑Related Symptoms
INTERNATIONAL JOURNAL OF MOLECULAR MEDICINE 35: 187-194, 2015 Cinnamomum cassia bark produced by solid‑state fermentation with Phellinus baumii has the potential to alleviate atopic dermatitis‑related symptoms YONG‑KYU SHIN1,2, HYEONG‑U SON3, JONG-MYUNG KIM2, JIN‑CHUL HEO4, SANG‑HAN LEE3,4 and JONG-GUK KIM1 1Department of Microbiology, Kyungpook National University; 2Farmbios Co. Ltd., Techno Building; 3Department of Food Science and Biotechnology; 4Food and Bio‑Industry Research Institute, Kyungpook National University, Daegu 702‑701, Republic of Korea Received July 25, 2014; Accepted November 14, 2014 DOI: 10.3892/ijmm.2014.2006 Abstract. In order to evaluate whether the aqueous fraction of C. cassia have not been fully elucidated using in vivo animal of Cinnamomum cassia produced by solid-state fermentation models. The dried bark of C. cassia is used not only as a preven- with Phellinus baumii (afCc/Pb) inhibits atopic symptoms tive/therapeutic agent for various diseases, but as a flavoring or in vivo, its efficacy was evaluated in an animal model of seasoning in various foods (2). The bark of the tree is known 2,4‑dinitrofluorobenzene (DNFB)‑induced atopic dermatitis. as cinnamon, which is rich in essential oils and tannins, and Immune‑related cells were quantified using hematoxylin and inhibits the growth of several types of microbes (3). eosin staining, and phenotypic cytokines, enzymes and the Allergy is a symptom that develops in response to invasion expression of other proteins in the animal model were evalu- of antigens in the human body (4). During allergic inflam- ated. The data revealed that afCc/Pb (100 µg/ml) exhibited mation, mast cells produce immunoglobulin E (IgE), which strong anti‑atopic activity, causing a significant 40% reduction attaches to the mast cells within the tissues and is combined in immune response, as shown by the extent of ear swelling, with IgE of the mast cells. -
Fungal Biofilms As a Valuable Target for the Discovery of Natural
antibiotics Review Fungal Biofilms as a Valuable Target for the Discovery of Natural Products That Cope with the Resistance of Medically Important Fungi—Latest Findings Estefanía Butassi 1,†, Laura Svetaz 1,†, María Cecilia Carpinella 2, Thomas Efferth 3 and Susana Zacchino 1,* 1 Pharmacognosy Area, School of Biochemical and Pharmaceutical Sciences, Universidad Nacional de Rosario, Suipacha 531, Rosario 2000, Argentina; [email protected] (E.B.); [email protected] (L.S.) 2 Fine Chemical and Natural Products Laboratory, IRNASUS CONICET-UCC, Universidad Católica de Córdoba, Córdoba 5016, Argentina; [email protected] 3 Institute of Pharmaceutical and Biomedical Sciences, Johannes Gutenberg University, Staudinger Weg 5, 55128 Mainz, Germany; [email protected] * Correspondence: [email protected] † These authors contributed equally to this work. Abstract: The development of new antifungal agents that target biofilms is an urgent need. Natural products, mainly from the plant kingdom, represent an invaluable source of these enti- ties. The present review provides an update (2017–May 2021) on the available information on essential oils, propolis, extracts from plants, algae, lichens and microorganisms, compounds from different natural sources and nanosystems containing natural products with the capacity to in vitro or in vivo modulate fungal biofilms. The search yielded 42 articles; seven involved essential oils, two Citation: Butassi, E.; Svetaz, L.; Carpinella, M.C.; Efferth, T.; Zacchino, Brazilian propolis, six plant extracts and one of each, extracts from lichens and algae/cyanobacteria. S. Fungal Biofilms as a Valuable Twenty articles deal with the antibiofilm effect of pure natural compounds, with 10 of them in- Target for the Discovery of Natural cluding studies of the mechanism of action and five dealing with natural compounds included in Products That Cope with the nanosystems. -
Angiosperm Clades in the Potomac Group: What Have We Learned Since 1977?
UC Davis UC Davis Previously Published Works Title Angiosperm clades in the potomac group: What have we learned since 1977? Permalink https://escholarship.org/uc/item/5z89c18z Journal Bulletin of the Peabody Museum of Natural History, 55(2-3) ISSN 0079-032X Authors Doyle, JA Upchurch, GR Publication Date 2014-10-01 DOI 10.3374/014.055.0203 Peer reviewed eScholarship.org Powered by the California Digital Library University of California Angiosperm Clades in the Potomac Group: What Have We Learned since 1977? James A. Doyle1 and Garland R. Upchurch, Jr.2 1 Corresponding author: Department of Evolution and Ecology, University of California, Davis CA 95616 USA —email: [email protected] 2 Department of Biology, Texas State University, San Marcos TX 78666 USA —email: [email protected] ABSTRACT In their 1977 study on Potomac Group angiosperms, Hickey and Doyle made only broad com- parisons with living taxa. Newer data, especially discoveries of fossil flowers in the Potomac and coeval deposits and increasingly robust molecular phylogenies of living angiosperms, allow more precise phylogenetic placement of fossils. Hickey and Doyle compared most early Potomac leaves (Aptian–early Albian) with “magnoliids,” a paraphyletic group as then defined, but several clades can now be recognized. Leaves and dispersed cuticles share epidermal features with woody mem- bers of the basal ANITA grade, and in some cases crown group Austrobaileyales, whose presence is confirmed by flowers called Anacostia. Aptian–Albian flowers (Monetianthus, Carpestella) and whole plants (Pluricarpellatia) are nested in crown group Nymphaeales; Potomac reniform leaves could belong to this clade. Several Potomac leaves have chloranthoid teeth, venation, and oppo- site phyllotaxis consistent with Chloranthaceae, while Aptian to Cenomanian flowers reveal the presence of both crown group Chloranthaceae (Asteropollis plant, near Hedyosmum) and stem relatives of this family and/or Ceratophyllum (Canrightia, Zlatkocarpus, Pennipollis plant, possi- bly Appomattoxia). -
Cinnamomum Camphora, Camphor Laurel Most Toxic Chemotypes.’
Advice to the Minister for the Environment and Heritage from the Threatened Species Scientific Committee (TSSC) on Amendments to the List of Key Threatening Processes under the Environment Protection and Biodiversity Conservation Act 1999 (EPBC Act) 1. Name and description of the threatening process ‘Cinnamomum camphora, Camphor Laurel most toxic chemotypes.’ Camphor Laurel is a large evergreen tree that was introduced into Australia following European settlement. The species is an invasive woody weed capable of replacing native trees along watercourses and on soil types which formerly supported rainforests. The infestation and spread of Camphor Laurel is aided by birds dispersing seed and its spread is particularly prevalent in disturbed landscapes. The nomination focuses on the claimed toxic effects of certain forms of the species. It proposes that the most toxic forms of Camphor Laurel contain compounds in their fruit, seeds, leaves, roots and bark which have caused declines in native species throughout northern New South Wales and southeastern Queensland. The nomination highlights that Camphor Laurel trees can exist in up to nine different chemical forms. The nominator uses the description ‘most toxic chemotypes1’ to refer to those Camphor Laurel trees with the greatest levels of toxic compounds. It is asserted that the hybridisation of various forms of Camphor Laurel has assisted in the proliferation of the more toxic chemotypes and that where the most toxic chemotypes of Camphor Laurel are present, loss of regional biodiversity -
Rose-Crowned Fruit-Dove Ptilinopus Regina Review of Current Information in NSW August 2008
NSW SCIENTIFIC COMMITTEE Rose-crowned Fruit-dove Ptilinopus regina Review of Current Information in NSW August 2008 Current status The NSW Scientific Committee recently determined that the Rose-crowned Fruit-dove Ptilinopus regina (Swainson 1825) meets criteria for listing as Vulnerable under the NSW Threatened Species Conservation Act 1995 (TSC Act), based on information contained in this report and other information available for the species. The Rose-crowned Fruit-dove is not currently listed under any other State or Commonwealth legislation. Species description: The Rose-crowned Fruit-dove is a small (23 cm in length), compact, short-tailed pigeon. It is mostly green, with grey foreparts, a pink-red crown with a yellow border, orange underparts, and a distinctive yellow tail tip. The grey breast has green-streaked spiky feathers, and there is a small mauve patch on the belly. It has a distinctive descending, accelerating call. The similar Superb Fruit-dove Ptilinopus superbus has a purple cap, orange hind-collar, a dark band separating the grey breast from the green flanks and white belly, a white tail tip, and a slow ‘whooping’ call. The larger and longer-tailed Wompoo Fruit-dove Ptilinopus magnificus has a plain grey head, a widening purple blaze from the chin to the belly, and yellow underwings. Taxonomy: Species: Ptilinopus regina (Swainson 1825) (Columbidae); an endemic Australasian species in an Australasian-centred genus extending to Malaysia and Polynesia. The nominate subspecies P. r. regina occurs in NSW and Queensland; subspecies P. r. ewingii (Gould 1842) occurs in the Northern Territory and the Kimberley of Western Australia. -
A Toothed Lauraceae Leaf from the Early Eocene of Tasmania, Australia
A TOOTHED LAURACEAE LEAF FROM THE EARLY EOCENE OF TASMANIA, AUSTRALIA Raymond J. Carpenter, 1,* Gregory J. Jordan, † and Robert S. Hill *,‡ *School of Earth and Environmental Sciences, University of Adelaide, SA 5005, Australia; †Department of Plant Science, University of Tasmania, P.O. Box 252-55, Hobart, Tasmania 7001, Australia; and ‡Centre for Evolutionary Biology and Biodiversity, South Australian Museum, Adelaide, SA 5000, Australia 1Author for correspondence; e-mail [email protected] Running head: CARPENTER ET AL.-EARLY EOCENE TOOTHED LAURACEAE Bandulskaia aestuaria gen. et sp. nov. is described from Early Eocene estuarine sediments in Tasmania. It is represented by an incomplete leaf with a finely toothed margin and well-preserved cuticle. Despite the absence of such teeth in over 2500 known species of fossil and extant Lauraceae, the fossil cuticle exhibits traits that in combination are only found in the family. These include the derived characters of sunken, paracytic stomata with small, apparently embedded guard cells, stomata confined to small areoles, and stomatal positions that are marked by slit-like abaxial surface apertures, as well as the presence of persistent resin bodies and simple, uniseriate trichomes with thickened, poral bases. Although monimioid teeth occur widely in other lauralean families, the teeth in B. aestuaria are not monimioid, and it is most parsimonious to infer that the teeth were derived independently within Lauraceae, possibly in response to the physiological demands of the warm, waterlogged, high latitude, ‘Greenhouse’ environment. Keywords : Early Eocene, Lauraceae, Laurales, leaf teeth, leaf cuticle, stomata. Introduction The Lauraceae is one of the largest subtropical to tropical families of woody plants, with over 50 genera and 2500 to 3000 species (Rohwer 1993). -
Phylogeny and Historical Biogeography of Lauraceae: Evidence from the Chloroplast and Nuclear Genomes Author(S): Andre S
Phylogeny and Historical Biogeography of Lauraceae: Evidence from the Chloroplast and Nuclear Genomes Author(s): Andre S. Chanderbali, Henk van der Werff, Susanne S. Renner Source: Annals of the Missouri Botanical Garden, Vol. 88, No. 1 (Winter, 2001), pp. 104-134 Published by: Missouri Botanical Garden Press Stable URL: http://www.jstor.org/stable/2666133 . Accessed: 11/09/2011 12:55 Your use of the JSTOR archive indicates your acceptance of the Terms & Conditions of Use, available at . http://www.jstor.org/page/info/about/policies/terms.jsp JSTOR is a not-for-profit service that helps scholars, researchers, and students discover, use, and build upon a wide range of content in a trusted digital archive. We use information technology and tools to increase productivity and facilitate new forms of scholarship. For more information about JSTOR, please contact [email protected]. Missouri Botanical Garden Press is collaborating with JSTOR to digitize, preserve and extend access to Annals of the Missouri Botanical Garden. http://www.jstor.org PHYLOGENY Andre'S. Chanderbali,2'3Henk van der AND HISTORICAL Werff,3 and Susanne S. Renner3 BIOGEOGRAPHY OF LAURACEAE: EVIDENCE FROM THE CHLOROPLAST AND NUCLEAR GENOMES1 ABSTRACT Phylogenetic relationships among 122 species of Lauraceae representing 44 of the 55 currentlyrecognized genera are inferredfrom sequence variation in the chloroplast and nuclear genomes. The trnL-trnF,trnT-trnL, psbA-trnH, and rpll6 regions of cpDNA, and the 5' end of 26S rDNA resolved major lineages, while the ITS/5.8S region of rDNA resolved a large terminal lade. The phylogenetic estimate is used to assess morphology-based views of relationships and, with a temporal dimension added, to reconstructthe biogeographic historyof the family.Results suggest Lauraceae radiated when trans-Tethyeanmigration was relatively easy, and basal lineages are established on either Gondwanan or Laurasian terrains by the Late Cretaceous.