Horticulture and Invasive Alien Plants
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Complete Chloroplast Genomes Shed Light on Phylogenetic
www.nature.com/scientificreports OPEN Complete chloroplast genomes shed light on phylogenetic relationships, divergence time, and biogeography of Allioideae (Amaryllidaceae) Ju Namgung1,4, Hoang Dang Khoa Do1,2,4, Changkyun Kim1, Hyeok Jae Choi3 & Joo‑Hwan Kim1* Allioideae includes economically important bulb crops such as garlic, onion, leeks, and some ornamental plants in Amaryllidaceae. Here, we reported the complete chloroplast genome (cpDNA) sequences of 17 species of Allioideae, fve of Amaryllidoideae, and one of Agapanthoideae. These cpDNA sequences represent 80 protein‑coding, 30 tRNA, and four rRNA genes, and range from 151,808 to 159,998 bp in length. Loss and pseudogenization of multiple genes (i.e., rps2, infA, and rpl22) appear to have occurred multiple times during the evolution of Alloideae. Additionally, eight mutation hotspots, including rps15-ycf1, rps16-trnQ-UUG, petG-trnW-CCA , psbA upstream, rpl32- trnL-UAG , ycf1, rpl22, matK, and ndhF, were identifed in the studied Allium species. Additionally, we present the frst phylogenomic analysis among the four tribes of Allioideae based on 74 cpDNA coding regions of 21 species of Allioideae, fve species of Amaryllidoideae, one species of Agapanthoideae, and fve species representing selected members of Asparagales. Our molecular phylogenomic results strongly support the monophyly of Allioideae, which is sister to Amaryllioideae. Within Allioideae, Tulbaghieae was sister to Gilliesieae‑Leucocoryneae whereas Allieae was sister to the clade of Tulbaghieae‑ Gilliesieae‑Leucocoryneae. Molecular dating analyses revealed the crown age of Allioideae in the Eocene (40.1 mya) followed by diferentiation of Allieae in the early Miocene (21.3 mya). The split of Gilliesieae from Leucocoryneae was estimated at 16.5 mya. -
Allium Paradoxum (M.Bieb.) G. Don (Amaryllidaceae) – a New Invasive Plant Species for the Flora of Baltic States
Acta Biol. Univ. Daugavp. 20 (1) 2020 ISSN 1407 - 8953 ALLIUM PARADOXUM (M.BIEB.) G. DON (AMARYLLIDACEAE) – A NEW INVASIVE PLANT SPECIES FOR THE FLORA OF BALTIC STATES Pēteris Evarts-Bunders, Aiva Bojāre Evarts-Bunders P., Bojāre A. 2020. Allium paradoxum (M. Bieb.) G. Don – a new invasive plant species for the flora of Baltic States.Acta Biol. Univ. Daugavp., 20 (1): 55 – 60. Allium paradoxum (M. Bieb.) G. Don was recorded as a new species for the flora of Latvia and the Baltic States on the basis of plant material first collected by A. Bojāre and P. Evarts-Bunders in 2020. Relatively large population of this species was found in Rīga, in the Rumbula district (Eastern border of the city), on the slope of the river Daugava covered by natural vegetation, but near the private gardens zone and ruderal places. This species can be easily distinguished from other Allium species by one flat, 5-25 mm wide, keeled leaf per bulb, inflorescence with several bulbils and mostly with only one flower. The species is considered as invasive and spreading by means of bulbils. In Latvia the species has been identified in their typical habitat – disturbed forest and shrubland along the riverbank on damp soil. Key words: Allium paradoxum, Latvia, Baltic States, invasive plant, flora. Pēteris Evarts-Bunders. Institute of Life Sciences and Technology, Daugavpils University, Parādes str., 1A, Daugavpils, LV-5401, Latvia; [email protected] Aiva Bojāre. National Botanical garden, Dendroflora Department, Miera Str., 1, Salaspils, LV-2169, Latvia; [email protected] INTRODUCTION There are seven species of sedge occurring in the wild in Latvia – Allium angulosum Allium L. -
Taxonomic Problems in Mediterranean Allium, and Relationships with Non-Mediterranean Allium Groups
Peter Hanelt Taxonomic problems in Mediterranean Allium, and relationships with non-Mediterranean Allium groups Abstract Hanelt, P.: Taxonomic problems in Mediterranean Allium, and relationships with non-Mediter ranean Allium groups. - Bocconea 5: 259-265. 1996. - ISSN 1120-4060. The Mediterranean region is one of the centres of diversity of the genus Allium. Representa tives of 4 out of 6 subgenera occur here, reflecting the rather heterogeneous evolutionary his tory of Allium in the Mediterranean area. Some are representatives of the basic stock of the genus, belonging e.g. to A. subg. Rhizirideum (mainly distributed in continental temperate Eurasia, and with rather unspecialized features) and subg. Amerallium (with the subendemic A. sect. Molium and some other small, derived species groups, adapted by their growth rhythm to the Mediterranean climate with its prolonged dry season). The majority of species belong to A. subg. Allium, whose evolution and radiation can be correlated to the development of vast arid regions, open for colonization, after the shrinking of the Tethys sea in the so-called Old Medi terranean region. The few Mediterranean species of A. subg. Melanocrommyum represent east em immigrations from the Irano-Turanian province. Inlroduction The Mediterranean region is one of the centres of species diversity of the genus Allium. As computed from recent fIoras and taxonomic papers, 165 species occur in this area, i.e., almost y4Jf the world total of Allium species. In terrns of taxonomy, the Medi terranean species are a very heterogeneous assemblage: with the exception of two small, mainly E Asian subgenera, they represent all important subgenera of the genus, and refIect their geographic and phylogenetic diversity. -
New Zealand Flatworm
www.nonnativespecies.org Produced by Max Wade, Vicky Ames and Kelly McKee of RPS New Zealand Flatworm Species Description Scientific name: Arthurdendyus triangulatus AKA: Artioposthia triangulata Native to: New Zealand Habitat: Gardens, nurseries, garden centres, parks, pasture and on wasteland This flatworm is very distinctive with a dark, purplish-brown upper surface with a narrow, pale buff spotted edge and pale buff underside. Many tiny eyes. Pointed at both ends, and ribbon-flat. A mature flatworm at rest is about 1 cm wide and 6 cm long but when extended can be 20 cm long and proportionally narrower. When resting, it is coiled and covered in mucus. It probably arrived in the UK during the 1960s, with specimen plants sent from New Zealand to a botanic garden. It was only found occasionally for many years, but by the early 1990s there were repeated findings in Scotland, Northern Ireland and northern England. Native to New Zealand, the flatworm is found in shady, wooded areas. Open, sunny pasture land is too hot and dry with temperatures over 20°C quickly lethal to it. New Zealand flatworms prey on earthworms, posing a potential threat to native earthworm populations. Further spread could have an impact on wild- life species dependent on earthworms (e.g. Badgers, Moles) and could have a localised deleterious effect on soil structure. For details of legislation go to www.nonnativespecies.org/legislation. Key ID Features Underside pale buff Ribbon flat Leaves a slime trail Pointed at Numerous both ends tiny eyes 60 - 200 mm long; 10 mm wide Upper surface dark, purplish-brown with a narrow, pale buff edge Completely smooth body surface Forms coils when at rest Identification throughout the year Distribution Egg capsules are laid mainly in spring but can be found all year round. -
In Vitro Antitrichomonal Activity of Some Species of Allium
Jundishapur J Nat Pharm Prod. 2020 February; 15(1):e89649. doi: 10.5812/jjnpp.89649. Published online 2019 December 9. Research Article In Vitro Antitrichomonal Activity of Some Species of Allium Atena Majidi 1, 2, Hajar Ziaei Hezarjaribi 3, Hojat-Allah Arab 2, Zohreh Momeni 4, Ali Davoodi 1 and Mohammad Azadbakht 1, * 1Department of Pharmacognosy and Biotechnology, Faculty of Pharmacy, Mazandaran University of Medical Sciences, Sari, Iran 2Student Research Committee, Faculty of Pharmacy, Mazandaran University of Medical Sciences, Sari, Iran 3Department of Parasitology, School of Medicine, Toxoplasmosis Research Center, Mazandaran University of Medical Sciences, Sari, Iran 4Department of Parasitology and Mycology, Faculty of Medicine, Azad University, Karaj, Iran *Corresponding author: Department of Pharmacognosy and Biotechnology, Faculty of Pharmacy, Mazandaran University of Medical Sciences, Sari, Iran. Email: [email protected] Received 2019 January 21; Revised 2019 June 03; Accepted 2019 June 09. Abstract Background: Trichomonas vaginalis infectious disease is an important worldwide health problem. Although, several drugs espe- cially metronidazole and tinidazole have been used in the treatment, their-resistant strains have been developed and unpleasant adverse effects exist. Garlic and other Allium species are old medicinal plants, which were used for infectious diseases, cardiovascular disorders and hair and skin cosmetic diseases. Objectives: We aimed to compare the anti-trichomoniasis activities of three species of Allium. Methods: The Trichomonas vaginalis strain was isolated from vaginal discharge of women with vaginitis symptoms and cultured in a modified TYM medium. After confirmation of herbarium of the plants, their extracts were prepared. For testing, 24 sterile plates were used. In all 24 homes, 200 µL of TYM were poured out. -
The Perils of Botanical Hibernation!
The perils of botanical hibernation! This time of year finds many a botanist in the grip of hibernation, waiting patiently for the days to lengthen and the warmth of spring to coax them out again into the field. Nothing wrong with that whatsoever. But perhaps we wait a bit too long. Many charismatic, easy-to-identify spring flowers seem to creep under the radar, their best days behind them by the time we emerge blinking into the sunshine. A search of the BSBI database reveals that widespread, common early- flowering species are remarkably under-recorded in our area of central Scotland. Snowdrop (Galanthus nivalis) has only been recorded from a measly 11 tetrads (2x2km2 units) in Stirlingshire (Vice-county 86) from 2000 onwards. And only from 17 tetrads…ever! Snowdrop (Galanthus nivalis) records in VC 86, post-2000, grouped by tetrad Lesser Celandine (Ficaria verna) is one of those delightful woodland flowers that also appears along hedgerows, road verges and even upland rush-pastures – pretty much everywhere. And yet in Stirlingshire we have great big gaps in its distribution, probably due in part to its relatively early flowering. Keep an eye out for the distinctive heart-shaped leaves, which last much longer into the season. Lesser Celandine (Ficaria verna) records in VC 86, post-2000, grouped by tetrad Photographs © Matt Harding. All distribution maps © BSBI 2019 Another well-known, charismatic spring woodland flower is Ramsons, or Wild Garlic (Allium ursinum). This pleasantly smelly species is an ancient woodland indicator, but also turns up in modified woodlands and wooded river valleys. -
Platyhelminthes: Tricladida: Terricola) of the Australian Region
ResearchOnline@JCU This file is part of the following reference: Winsor, Leigh (2003) Studies on the systematics and biogeography of terrestrial flatworms (Platyhelminthes: Tricladida: Terricola) of the Australian region. PhD thesis, James Cook University. Access to this file is available from: http://eprints.jcu.edu.au/24134/ The author has certified to JCU that they have made a reasonable effort to gain permission and acknowledge the owner of any third party copyright material included in this document. If you believe that this is not the case, please contact [email protected] and quote http://eprints.jcu.edu.au/24134/ Studies on the Systematics and Biogeography of Terrestrial Flatworms (Platyhelminthes: Tricladida: Terricola) of the Australian Region. Thesis submitted by LEIGH WINSOR MSc JCU, Dip.MLT, FAIMS, MSIA in March 2003 for the degree of Doctor of Philosophy in the Discipline of Zoology and Tropical Ecology within the School of Tropical Biology at James Cook University Frontispiece Platydemus manokwari Beauchamp, 1962 (Rhynchodemidae: Rhynchodeminae), 40 mm long, urban habitat, Townsville, north Queensland dry tropics, Australia. A molluscivorous species originally from Papua New Guinea which has been introduced to several countries in the Pacific region. Common. (photo L. Winsor). Bipalium kewense Moseley,1878 (Bipaliidae), 140mm long, Lissner Park, Charters Towers, north Queensland dry tropics, Australia. A cosmopolitan vermivorous species originally from Vietnam. Common. (photo L. Winsor). Fletchamia quinquelineata (Fletcher & Hamilton, 1888) (Geoplanidae: Caenoplaninae), 60 mm long, dry Ironbark forest, Maryborough, Victoria. Common. (photo L. Winsor). Tasmanoplana tasmaniana (Darwin, 1844) (Geoplanidae: Caenoplaninae), 35 mm long, tall open sclerophyll forest, Kamona, north eastern Tasmania, Australia. -
Allium Paradoxum Var. Paradoxum, Une Invasive En Expansion À Waremme (Belgique, Prov
Allium paradoxum var. paradoxum, une invasive en expansion à Waremme (Belgique, prov. de Liège) Amaury Graulich Rue Octave Chabot 17, B-4357 Haneffe, Belgique [email protected][ ] Photos par l’auteur Abstract. – Allium paradoxum var. paradoxum, an expanding invasive species around Waremme (prov. of Liège, Belgium). This paper describes the origin and expansion of the populations around Waremme of Allium paradoxum var. paradoxum, an invasive garlic in Western Europe. Samenvatting. – Allium paradoxum var. paradoxum, een uitbreidende exoot in de om- geving van Waremme (prov. Luik, België). Dit artikel beschrijft de oorsprong en evolutie van de populaties van Allium paradoxum var. paradoxum, een in West-Europa invasieve exoot, in de omgeving van Waremme. Introduction campanulé et composé de six tépales blancs, oblongs et à apex obtus. Le fruit est une capsule à trois loges qui est Allium paradoxum (M. Bieb.) G. Don var. paradoxum rarement observée en Europe, ce qui implique que cet ail (Lambinon & Verloove, 2012) est une Amaryllidaceae originaire du Caucase et de l’Iran (Stearn, 1980). Suite se multiplie principalement par voie végétative (Sell & à son introduction en tant que bulbeuse ornementale, cet Murrell 2007, Stearn 1980, Barling 1971). ail s’est naturalisé dans plusieurs pays d’Europe centrale Dans la suite de l’article, le binôme Allium paradoxum et nord-occidentale (Stearn, 1980). Une fois installée, la fera référence à la var. paradoxum car la var. normale est plante montre un caractère invasif par la formation de po- très rare en Europe occidentale. pulations denses en sous-bois. La densité du tapis formé A l’instar d’A. -
The Potential Detrimental Impact of the New Zealand Flatworm to Scottish
B. Boag and R. Neilson Boag, B. and R. Neilson. The potential detrimental impact of the New Zealand fl atworm to Scottish islands The potential detrimental impact of the New Zealand fl atworm to Scottish islands B. Boag and R. Neilson The James Hutton Institute, Invergowrie, Dundee, Scotland, DD2 5DA, UK. <[email protected]>. Abstract: The New Zealand fl atworm, Arthurdendyus triangulatus, is an alien invasive species in The British Isles and the Faroes. It was probably fi rst introduced after WWII and is an obligate predator of our native earthworms. It was initially considered a curiosity until observations in the 1990s in Northern Ireland found it could signifi cantly reduce earthworm numbers. In 1992, it was scheduled under the Countryside and Wildlife Act 1981 then transferred to the Wildlife and Natural Environment (Scotland) Act in 2011 which makes it an off ence to knowingly distribute the fl atworm. A retrospective survey in Scotland showed that it was detected in botanic gardens, nurseries and garden centres in the 1960s but then spread to domestic gardens then fi nally to farms in the 1990s. Although the geographical distribution of A. triangulatus was initially confi ned to mainland Scotland it was subsequently found established on 30 Scottish Islands. Most of the islands are to the north and west of Scotland and have cool damp climates which are favoured by the New Zealand fl atworm. These islands also generally have relatively poor soils that support grassland farming systems. Evidence from both Northern Ireland and Scotland suggests anecic species of earthworm which occur predominantly in grassland, which help drainage and are a source of food for both animals and birds are at particular risk from the fl atworm. -
The Long-Term Control of Giant Hogweed and Japanese Knotweed
THE THE The long-term control of Giant Hogweed and Japanese Knotweed: A case study of the Tweed and practical steps to establishing and delivering a successful, long-term control strategy Untitled-3 1 18/09/2006 07:58:26 THE Printed by Woods of Perth Ltd Design by DM Graphics Untitled-3 2 18/09/2006 07:58:50 Foreword: The consideration of “non-native” and “alien” species seems to arouse strong emotions nowadays in the politically-correct breast! Those species which have recently arrived on the British island, have not evolved here, and are invasive, and are likely to impinge upon the healthy functioning of otherwise stable ecosystems and their dependent species, do, however, demand some serious attention. Essentially, they are equivalent to pests which we accept as having to be controlled in any other desired system or crop. Rivers, with their fluctuating levels, exposed silts and gravels and long use as virtual open “drains” for our domestic, industrial and agricultural waste, are especially prone to invasions by incoming species. The Tweed is no exception. By the turn of the 20th century, a hundred and fifty years of textiles based on wool from all parts of the world had left a legacy of over one hundred and ten flowering plants which had gained entry on uncarded fleece. Others arrived as ornamentals for the post-eighteenth century vogue for designed polices and gardens. Most have not survived, or have done so only locally. They are not invasive. Some have, however, and Pirri-pirri Bur, (Acaena novae-zelandiae), Few- flowered Leek (Allium paradoxum) Giant Hogweed, (Heracleum mantegazzianum), Himalayan or Indian Balsam, (Impatiens glandulifera) Japanese Knotweed (Fallopia japonica) and Giant Knotweed (Fallopia sachalinensis) are among the most obvious along the river now. -
Invasive Alien Species in Switzerland
> Environmental studies > Organisms 29 > Invasive alien species 06 in Switzerland An inventory of alien species and their threat to biodiversity and economy in Switzerland > Environmental studies > Organisms > Invasive alien species in Switzerland An inventory of alien species and their threat to biodiversity and economy in Switzerland Mit deutscher Zusammenfassung – Avec résumé en français Published by the Federal Office for the Environment FOEN Bern, 2006 Impressum Editor Federal Office for the Environment (FOEN) FOEN is an office of the Federal Department of Environment, Transport, Energy and Communications (DETEC). Authors Rüdiger Wittenberg, CABI Bioscience Switzerland Centre, CH–2800 Delémont Marc Kenis, CABI Bioscience Switzerland Centre, CH–2800 Delémont Theo Blick, D–95503 Hummeltal Ambros Hänggi, Naturhistorisches Museum, CH–4001 Basel André Gassmann, CABI Bioscience Switzerland Centre, CH–2800 Delémont Ewald Weber, Geobotanical Institute, Swiss Federal Institute of Technology, CH–8044 Zürich FOEN consultant Hans Hosbach, Head of Section, Section Biotechnology Suggested form of citation Wittenberg, R. (ed.) (2005) An inventory of alien species and their threat to biodiversity and economy in Switzerland. CABI Bioscience Switzerland Centre report to the Swiss Agency for Environment, Forests and Landscape. The environment in practice no. 0629. Federal Office for the Environment, Bern. 155 pp. Design Ursula Nöthiger-Koch, 4813 Uerkheim Fact sheets The fact sheets are available at www.environment-switzerland.ch/uw-0629-e Pictures Cover picture: Harmonia axyridis Photo Marc Kenis, CABI Bioscience, Delémont. Orders FOEN Documentation CH-3003 Bern Fax +41 (0)31 324 02 16 [email protected] www.environment-switzerland.ch/uw-0629-e Order number and price: UW-0629-E / CHF 20.– (incl. -
Comparative Plastomics of Amaryllidaceae: Inverted Repeat
bioRxiv preprint doi: https://doi.org/10.1101/2021.06.21.449227; this version posted June 21, 2021. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC-ND 4.0 International license. 1 Comparative plastomics of Amaryllidaceae: Inverted 2 repeat expansion and the degradation of the ndh 3 genes in Strumaria truncata Jacq. 4 5 6 Kálmán Könyves1, 2*, Jordan Bilsborrow2, Maria D. Christodoulou3, Alastair 7 Culham2, and John David1 8 9 1 Royal Horticultural Society, RHS Garden Wisley, Woking, United Kingdom 10 2 Herbarium, School of Biological Sciences, University of Reading, Reading, United Kingdom 11 3 Department of Statistics, University of Oxford, Oxford, United Kingdom 12 13 Corresponding Author: 14 Kálmán Könyves 15 Email address: [email protected] 1 bioRxiv preprint doi: https://doi.org/10.1101/2021.06.21.449227; this version posted June 21, 2021. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC-ND 4.0 International license. 16 Abstract 17 18 Amaryllidaceae is a widespread and distinctive plant family contributing both food and 19 ornamental plants. Here we present an initial survey of plastomes across the family and report on 20 both structural rearrangements and gene losses. Most plastomes in the family are of similar gene 21 arrangement and content however some taxa have shown gains in plastome length while in 22 several taxa there is evidence of gene loss.