Antimicrobial Activity Test of Genus Allium: a Review
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Comparative Dissection of Three Giant Genomes: Allium Cepa, Allium Sativum, and Allium Ursinum
International Journal of Molecular Sciences Article Comparative Dissection of Three Giant Genomes: Allium cepa, Allium sativum, and Allium ursinum Vratislav Peška 1,* , Terezie Mandáková 2 , Veronika Ihradská 1,2,† and Jiˇrí Fajkus 1,2,* 1 Institute of Biophysics, The Czech Academy of Sciences, Královopolská 135, 612 65 Brno, Czech Republic; [email protected] 2 Mendel Centre for Plant Genomics and Proteomics, CEITEC, Masaryk University, Kamenice 5, CZ-62500 Brno, Czech Republic; [email protected] * Correspondence: [email protected] (V.P.); [email protected] (J.F.); Tel.: +420-541-517-199 (V.P.); +420-549-494-003 (J.F.) † Current address: Institute of Plant Genetics and Biotechnology, Plant Science and Biodiversity Center, Slovak Academy of Sciences, Akademická 2, P.O. Box 39A, 950 07 Nitra, Slovakia. Received: 4 January 2019; Accepted: 2 February 2019; Published: 9 February 2019 Abstract: Knowledge of the fascinating world of DNA repeats is continuously being enriched by newly identified elements and their hypothetical or well-established biological relevance. Genomic approaches can be used for comparative studies of major repeats in any group of genomes, regardless of their size and complexity. Such studies are particularly fruitful in large genomes, and useful mainly in crop plants where they provide a rich source of molecular markers or information on indispensable genomic components (e.g., telomeres, centromeres, or ribosomal RNA genes). Surprisingly, in Allium species, a comprehensive comparative study of repeats is lacking. Here we provide such a study of two economically important species, Allium cepa (onion), and A. sativum (garlic), and their distantly related A. -
Summary of Offerings in the PBS Bulb Exchange, Dec 2012- Nov 2019
Summary of offerings in the PBS Bulb Exchange, Dec 2012- Nov 2019 3841 Number of items in BX 301 thru BX 463 1815 Number of unique text strings used as taxa 990 Taxa offered as bulbs 1056 Taxa offered as seeds 308 Number of genera This does not include the SXs. Top 20 Most Oft Listed: BULBS Times listed SEEDS Times listed Oxalis obtusa 53 Zephyranthes primulina 20 Oxalis flava 36 Rhodophiala bifida 14 Oxalis hirta 25 Habranthus tubispathus 13 Oxalis bowiei 22 Moraea villosa 13 Ferraria crispa 20 Veltheimia bracteata 13 Oxalis sp. 20 Clivia miniata 12 Oxalis purpurea 18 Zephyranthes drummondii 12 Lachenalia mutabilis 17 Zephyranthes reginae 11 Moraea sp. 17 Amaryllis belladonna 10 Amaryllis belladonna 14 Calochortus venustus 10 Oxalis luteola 14 Zephyranthes fosteri 10 Albuca sp. 13 Calochortus luteus 9 Moraea villosa 13 Crinum bulbispermum 9 Oxalis caprina 13 Habranthus robustus 9 Oxalis imbricata 12 Haemanthus albiflos 9 Oxalis namaquana 12 Nerine bowdenii 9 Oxalis engleriana 11 Cyclamen graecum 8 Oxalis melanosticta 'Ken Aslet'11 Fritillaria affinis 8 Moraea ciliata 10 Habranthus brachyandrus 8 Oxalis commutata 10 Zephyranthes 'Pink Beauty' 8 Summary of offerings in the PBS Bulb Exchange, Dec 2012- Nov 2019 Most taxa specify to species level. 34 taxa were listed as Genus sp. for bulbs 23 taxa were listed as Genus sp. for seeds 141 taxa were listed with quoted 'Variety' Top 20 Most often listed Genera BULBS SEEDS Genus N items BXs Genus N items BXs Oxalis 450 64 Zephyranthes 202 35 Lachenalia 125 47 Calochortus 94 15 Moraea 99 31 Moraea -
First Insights Into the Mode of Action of a "Lachrymatory Factor Synthase"
Phytochemistry 72 (2011) 1939–1946 Contents lists available at ScienceDirect Phytochemistry journal homepage: www.elsevier.com/locate/phytochem First insights into the mode of action of a ‘‘lachrymatory factor synthase’’ – Implications for the mechanism of lachrymator formation in Petiveria alliacea, Allium cepa and Nectaroscordum species ⇑ Quan He a, Roman Kubec b, Abhijit P. Jadhav a, Rabi A. Musah a, a Department of Chemistry, University at Albany, State University of New York, Albany, NY 12222, USA b Department of Applied Chemistry, University of South Bohemia, Branišovská 31, 370 05 Cˇeské Budeˇjovice, Czech Republic article info abstract Article history: A study of an enzyme that reacts with the sulfenic acid produced by the alliinase in Petiveria alliacea L. Received 16 December 2010 (Phytolaccaceae) to yield the P. alliacea lachrymator (phenylmethanethial S-oxide) showed the protein Received in revised form 11 July 2011 to be a dehydrogenase. It functions by abstracting hydride from sulfenic acids of appropriate structure Available online 15 August 2011 to form their corresponding sulfines. Successful hydride abstraction is dependent upon the presence of a benzyl group on the sulfur to stabilize the intermediate formed on abstraction of hydride. This dehy- Keywords: drogenase activity contrasts with that of the lachrymatory factor synthase (LFS) found in onion, which Petiveria alliacea catalyzes the rearrangement of 1-propenesulfenic acid to (Z)-propanethial S-oxide, the onion lachryma- Phytolaccaceae tor. Based on the type of reaction it catalyzes, the onion LFS should be classified as an isomerase and Lachrymatory factor synthase Sulfenic acid would be called a ‘‘sulfenic acid isomerase’’, whereas the P. alliacea LFS would be termed a ‘‘sulfenic acid Sulfenic acid dehydrogenase dehydrogenase’’. -
– the 2020 Horticulture Guide –
– THE 2020 HORTICULTURE GUIDE – THE 2020 BULB & PLANT MART IS BEING HELD ONLINE ONLY AT WWW.GCHOUSTON.ORG THE DEADLINE FOR ORDERING YOUR FAVORITE BULBS AND SELECTED PLANTS IS OCTOBER 5, 2020 PICK UP YOUR ORDER OCTOBER 16-17 AT SILVER STREET STUDIOS AT SAWYER YARDS, 2000 EDWARDS STREET FRIDAY, OCTOBER 16, 2020 SATURDAY, OCTOBER 17, 2020 9:00am - 5:00pm 9:00am - 2:00pm The 2020 Horticulture Guide was generously underwritten by DEAR FELLOW GARDENERS, I am excited to welcome you to The Garden Club of Houston’s 78th Annual Bulb and Plant Mart. Although this year has thrown many obstacles our way, we feel that the “show must go on.” In response to the COVID-19 situation, this year will look a little different. For the safety of our members and our customers, this year will be an online pre-order only sale. Our mission stays the same: to support our community’s green spaces, and to educate our community in the areas of gardening, horticulture, conservation, and related topics. GCH members serve as volunteers, and our profits from the Bulb Mart are given back to WELCOME the community in support of our mission. In the last fifteen years, we have given back over $3.5 million in grants to the community! The Garden Club of Houston’s first Plant Sale was held in 1942, on the steps of The Museum of Fine Arts, Houston, with plants dug from members’ gardens. Plants propagated from our own members’ yards will be available again this year as well as plants and bulbs sourced from near and far that are unique, interesting, and well suited for area gardens. -
Mise Au Point D'une Méthode De Détection
Caractérisation des agents phytopathogènes responsables des pertes de la filière ail : mise au point d’une méthode de détection Paul L. Chretien To cite this version: Paul L. Chretien. Caractérisation des agents phytopathogènes responsables des pertes de la filière ail : mise au point d’une méthode de détection. Sciences agricoles. Université d’Avignon, 2021. Français. NNT : 2021AVIG0363. tel-03211009 HAL Id: tel-03211009 https://tel.archives-ouvertes.fr/tel-03211009 Submitted on 28 Apr 2021 HAL is a multi-disciplinary open access L’archive ouverte pluridisciplinaire HAL, est archive for the deposit and dissemination of sci- destinée au dépôt et à la diffusion de documents entific research documents, whether they are pub- scientifiques de niveau recherche, publiés ou non, lished or not. The documents may come from émanant des établissements d’enseignement et de teaching and research institutions in France or recherche français ou étrangers, des laboratoires abroad, or from public or private research centers. publics ou privés. THÈSE DE DOCTORAT D’AVIGNON UNIVERSITÉ Ecole Doctorale 536 Agrosciences & Sciences Spécialité / Discipline de doctorat : BIOLOGIE Laboratoire Pathologie Végétale – INRAE PACA Présentée par Paul Chrétien Caractérisation des agents phytopathogènes responsables des pertes de la filière ail Mise au point d’une méthode de détection Soutenue publiquement le 18/02/2021 devant le jury composé de : Marie-Hélène Balesdent, Directrice de recherche, INRAE Rapporteure Philippe Reignault, Professeur, ANSES Rapporteur François Lecompte, Chargé de recherche, INRAE Examinateur Frédéric Suffert, Ingénieur de recherche, INRAE Examinateur Christel Leyronas, Ingénieure de recherche, INRAE Directrice de thèse Cindy Morris, Directrice de recherche, INRAE Directrice de thèse Céline Vézian, Responsable R&D, Alinéa coopérative Invitée À toi qui retombera sur ces pages. -
Hill View Rare Plants, Summer Catalogue 2011, Australia
Summer 2011/12 Hill View Rare Plants Calochortus luteus Calochortus superbus Susan Jarick Calochortus albidus var. rubellus 400 Huon Road South Hobart Tas 7004 Ph 03 6224 0770 Summer 2011/12 400 Huon Road South Hobart Tasmania, 7004 400 Huon Road South Hobart Tasmania, 7004 Summer 2011/12 Hill View Rare Plants Ph 03 6224 0770 Ph 03 6224 0770 Hill View Rare Plants Marcus Harvey’s Hill View Rare Plants 400 Huon Road South Hobart Tasmania, 7004 Welcome to our 2011/2012 summer catalogue. We have never had so many problems in fitting the range of plants we have “on our books” into the available space! We always try and keep our lists “democratic” and balanced although at times our prejudices show and one or two groups rise to the top. This year we are offering an unprecedented range of calochortus in a multiplicity of sizes, colours and flower shapes from the charming fairy lanterns of C. albidus through to the spectacular, later-flowering mariposas with upward-facing bowl-shaped flowers in a rich tapestry of shades from canary-yellow through to lilac, lavender and purple. Counterpoised to these flashy dandies we are offering an assortment of choice muscari whose quiet charm, softer colours and Tulipa vvedenskyi Tecophilaea cyanocrocus Violacea persistent flowering make them no less effective in the winter and spring garden. Standouts among this group are the deliciously scented duo, M. muscarimi and M. macrocarpum and the striking and little known tassel-hyacith, M. weissii. While it has its devotees, many gardeners are unaware of the qualities of the large and diverse tribe of “onions”, known as alliums. -
The Republic of Tajikistan Ministry of Energy and Industry
The Republic of Tajikistan Ministry of Energy and Industry DATA COLLECTION SURVEY ON THE INSTALLMENT OF SMALL HYDROPOWER STATIONS FOR THE COMMUNITIES OF KHATLON OBLAST IN THE REPUBLIC OF TAJIKISTAN FINAL REPORT September 2012 Japan International Cooperation Agency NEWJEC Inc. E C C CR (1) 12-005 Final Report Contents, List of Figures, Abbreviations Data Collection Survey on the Installment of Small Hydropower Stations for the Communities of Khatlon Oblast in the Republic of Tajikistan FINAL REPORT Table of Contents Summary Chapter 1 Preface 1.1 Objectives and Scope of the Study .................................................................................. 1 - 1 1.2 Arrangement of Small Hydropower Potential Sites ......................................................... 1 - 2 1.3 Flowchart of the Study Implementation ........................................................................... 1 - 7 Chapter 2 Overview of Energy Situation in Tajikistan 2.1 Economic Activities and Electricity ................................................................................ 2 - 1 2.1.1 Social and Economic situation in Tajikistan ....................................................... 2 - 1 2.1.2 Energy and Electricity ......................................................................................... 2 - 2 2.1.3 Current Situation and Planning for Power Development .................................... 2 - 9 2.2 Natural Condition ............................................................................................................ -
Alplains 2013 Seed Catalog P.O
ALPLAINS 2013 SEED CATALOG P.O. BOX 489, KIOWA, CO 80117-0489, U.S.A. Three ways to contact us: FAX: (303) 621-2864 (24 HRS.) email: [email protected] website: www.alplains.com Dear Growing Friends: Welcome to our 23rd annual seed catalog! The summer of 2012 was long, hot and brutal, with drought afflicting most of the U.S. Most of my botanical explorations were restricted to Idaho, Wash- ington, Oregon and northern California but even there moisture was below average. In a year like this, seeps, swales, springs, vestigial snowbanks and localized rainstorms became much more important in my search for seeding plants. On the Snake River Plains of southern Idaho and the scab- lands of eastern Washington, early bloomers such as Viola beckwithii, V. trinervata, Ranunculus glaberrimus, Ranunculus andersonii, Fritillaria pudica and Primula cusickiana put on quite a show in mid-April but many populations could not set seed. In northern Idaho, Erythronium idahoense flowered extensively, whole meadows were covered with thousands of the creamy, pendant blossoms. One of my most satisfying finds in the Hells Canyon area had to be Sedum valens. The tiny glaucous rosettes, surround- ed by a ring of red leaves, are a succulent connoisseur’s dream. Higher up, the brilliant blue spikes of Synthyris missurica punctuated the canyon walls. In southern Oregon, the brilliant red spikes of Pedicularis densiflora lit up the Siskiyou forest floor. Further north in Oregon, large populations of Erythronium elegans, Erythronium oregonum ssp. leucandrum, Erythro- nium revolutum, trilliums and sedums provided wonderful picture-taking opportunities. Eriogonum species did well despite the drought, many of them true xerics. -
Complete Chloroplast Genomes Shed Light on Phylogenetic
www.nature.com/scientificreports OPEN Complete chloroplast genomes shed light on phylogenetic relationships, divergence time, and biogeography of Allioideae (Amaryllidaceae) Ju Namgung1,4, Hoang Dang Khoa Do1,2,4, Changkyun Kim1, Hyeok Jae Choi3 & Joo‑Hwan Kim1* Allioideae includes economically important bulb crops such as garlic, onion, leeks, and some ornamental plants in Amaryllidaceae. Here, we reported the complete chloroplast genome (cpDNA) sequences of 17 species of Allioideae, fve of Amaryllidoideae, and one of Agapanthoideae. These cpDNA sequences represent 80 protein‑coding, 30 tRNA, and four rRNA genes, and range from 151,808 to 159,998 bp in length. Loss and pseudogenization of multiple genes (i.e., rps2, infA, and rpl22) appear to have occurred multiple times during the evolution of Alloideae. Additionally, eight mutation hotspots, including rps15-ycf1, rps16-trnQ-UUG, petG-trnW-CCA , psbA upstream, rpl32- trnL-UAG , ycf1, rpl22, matK, and ndhF, were identifed in the studied Allium species. Additionally, we present the frst phylogenomic analysis among the four tribes of Allioideae based on 74 cpDNA coding regions of 21 species of Allioideae, fve species of Amaryllidoideae, one species of Agapanthoideae, and fve species representing selected members of Asparagales. Our molecular phylogenomic results strongly support the monophyly of Allioideae, which is sister to Amaryllioideae. Within Allioideae, Tulbaghieae was sister to Gilliesieae‑Leucocoryneae whereas Allieae was sister to the clade of Tulbaghieae‑ Gilliesieae‑Leucocoryneae. Molecular dating analyses revealed the crown age of Allioideae in the Eocene (40.1 mya) followed by diferentiation of Allieae in the early Miocene (21.3 mya). The split of Gilliesieae from Leucocoryneae was estimated at 16.5 mya. -
December 2012 Number 1
Calochortiana December 2012 Number 1 December 2012 Number 1 CONTENTS Proceedings of the Fifth South- western Rare and Endangered Plant Conference Calochortiana, a new publication of the Utah Native Plant Society . 3 The Fifth Southwestern Rare and En- dangered Plant Conference, Salt Lake City, Utah, March 2009 . 3 Abstracts of presentations and posters not submitted for the proceedings . 4 Southwestern cienegas: Rare habitats for endangered wetland plants. Robert Sivinski . 17 A new look at ranking plant rarity for conservation purposes, with an em- phasis on the flora of the American Southwest. John R. Spence . 25 The contribution of Cedar Breaks Na- tional Monument to the conservation of vascular plant diversity in Utah. Walter Fertig and Douglas N. Rey- nolds . 35 Studying the seed bank dynamics of rare plants. Susan Meyer . 46 East meets west: Rare desert Alliums in Arizona. John L. Anderson . 56 Calochortus nuttallii (Sego lily), Spatial patterns of endemic plant spe- state flower of Utah. By Kaye cies of the Colorado Plateau. Crystal Thorne. Krause . 63 Continued on page 2 Copyright 2012 Utah Native Plant Society. All Rights Reserved. Utah Native Plant Society Utah Native Plant Society, PO Box 520041, Salt Lake Copyright 2012 Utah Native Plant Society. All Rights City, Utah, 84152-0041. www.unps.org Reserved. Calochortiana is a publication of the Utah Native Plant Society, a 501(c)(3) not-for-profit organi- Editor: Walter Fertig ([email protected]), zation dedicated to conserving and promoting steward- Editorial Committee: Walter Fertig, Mindy Wheeler, ship of our native plants. Leila Shultz, and Susan Meyer CONTENTS, continued Biogeography of rare plants of the Ash Meadows National Wildlife Refuge, Nevada. -
A Taxonomic Re-Evaluation of the Allium Sanbornii Complex
University of the Pacific Scholarly Commons University of the Pacific Theses and Dissertations Graduate School 1986 A taxonomic re-evaluation of the Allium sanbornii complex Stella Sue Denison University of the Pacific Follow this and additional works at: https://scholarlycommons.pacific.edu/uop_etds Part of the Biology Commons Recommended Citation Denison, Stella Sue. (1986). A taxonomic re-evaluation of the Allium sanbornii complex. University of the Pacific, Thesis. https://scholarlycommons.pacific.edu/uop_etds/2124 This Thesis is brought to you for free and open access by the Graduate School at Scholarly Commons. It has been accepted for inclusion in University of the Pacific Theses and Dissertations by an authorized administrator of Scholarly Commons. For more information, please contact [email protected]. A TAXONOMIC RE-EVALUATION OF THE ALLIUM SANBORNII COMPLEX A Thesis Presented to the Faculty of the Graduate School University of the Pacific In Partial Fulfillment of the Requirements for the Degree Master of Science by Stella S. Denison August 1986 ACKNOWLEDGMENTS Many contributions have been made for my successful completion of this work. Appreciation is extended to: Drs. Dale McNeal, Alice Hunter, and Anne Funkhouser for their advice and assistance during the research and in the preparation of this manuscript, the entire Biology faculty for their, friendship and suggestions, Ginger Tibbens for the typing of this manuscript, and to my husband, Craig, and my children, Amy, Eric and Deborah for their continued support and encouragement. Grateful acknowledgement is made to the curators of the herbaria from which material was borrowed during this investigation. These herbaria are indicated below by the standard abbreviations of Holmgren and Keuken (1974}. -
Analysis of Essential Oil from Leaves and Bulbs of Allium Atroviolaceum
Brief Communication and Method report 2020;3(1):e8 Analysis of essential oil from leaves and Bulbs of Allium atroviolaceum a a b c* Parniyan Sebtosheikh , Mahnaz Qomi , Shima Ghadami , Faraz Mojab a. Faculty of Pharmaceutical Chemistry, Pharmaceutical Sciences Branch, Islamic Azad University, Tehran, Iran. b. Faculty of Pharmacy, Pharmaceutical Sciences Branch, Islamic Azad University, Tehran, Iran. c. School of Pharmacy and Pharmaceutical Sciences Research Center, Shahid Beheshti University of Medical Sciences, Tehran, Iran. Article Info: Abstract: Received: September 2020 Introduction: Medicinal plants used in traditional medicine as prevention and treatment Accepted: September 2020 of disease and illness or use in foods, has a long history. Plants belonging to genera Published online: Allium have widely been acquired as food and medicine. In many countries, including September 2020 Iran, a variety of species of the genus Allium such as garlic, onions, leeks, shallots, etc use for food and medicinal uses. Methods and Results: The leaves and bulbs of Allium atroviolaceum, collected from * Corresponding Author: Borujerd (Lorestan Province, Iran) in May 2015 and their essential oils of were obtained Faraz Mojab Email: [email protected] by hydro-distillation. The oils were analyzed by gas chromatography coupled with mass spectrometry (GC/MS) and their chemical composition was identified. The major constituents of A. atroviolaceum leaves oil were dimethyl trisulfide (59.0%), ethyl linolenate (12.4%), phytol (11.4%) and in bulb oil were methyl methyl thiomethyl disulfide (61.3%), dimethyl trisulfide (15.1%) and methyl allyl disulfide (4.3%). The major constituents of both essential oils are sulfur compounds. Conclusion: The results of the present study can help to increase of our information about composition of an edible herb in Iran.