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Viruses 2015, 7, 456-479; Doi:10.3390/V7020456 OPEN ACCESS
Viruses 2015, 7, 456-479; doi:10.3390/v7020456 OPEN ACCESS viruses ISSN 1999-4915 www.mdpi.com/journal/viruses Article In Search of Pathogens: Transcriptome-Based Identification of Viral Sequences from the Pine Processionary Moth (Thaumetopoea pityocampa) Agata K. Jakubowska 1, Remziye Nalcacioglu 2, Anabel Millán-Leiva 3, Alejandro Sanz-Carbonell 1, Hacer Muratoglu 4, Salvador Herrero 1,* and Zihni Demirbag 2,* 1 Department of Genetics, Universitat de València, Dr Moliner 50, 46100 Burjassot, Spain; E-Mails: [email protected] (A.K.J.); [email protected] (A.S.-C.) 2 Department of Biology, Faculty of Sciences, Karadeniz Technical University, 61080 Trabzon, Turkey; E-Mail: [email protected] 3 Instituto de Hortofruticultura Subtropical y Mediterránea “La Mayora” (IHSM-UMA-CSIC), Consejo Superior de Investigaciones Científicas, Estación Experimental “La Mayora”, Algarrobo-Costa, 29750 Málaga, Spain; E-Mail: [email protected] 4 Department of Molecular Biology and Genetics, Faculty of Sciences, Karadeniz Technical University, 61080 Trabzon, Turkey; E-Mail: [email protected] * Authors to whom correspondence should be addressed; E-Mails: [email protected] (S.H.); [email protected] (Z.D.); Tel.: +34-96-354-3006 (S.H.); +90-462-377-3320 (Z.D.); Fax: +34-96-354-3029 (S.H.); +90-462-325-3195 (Z.D.). Academic Editors: John Burand and Madoka Nakai Received: 29 November 2014 / Accepted: 13 January 2015 / Published: 23 January 2015 Abstract: Thaumetopoea pityocampa (pine processionary moth) is one of the most important pine pests in the forests of Mediterranean countries, Central Europe, the Middle East and North Africa. Apart from causing significant damage to pinewoods, T. -
KHV) by Serum Neutralization Test
Downloaded from orbit.dtu.dk on: Nov 08, 2017 Detection of antibodies specific to koi herpesvirus (KHV) by serum neutralization test Cabon, J.; Louboutin, L.; Castric, J.; Bergmann, S. M.; Bovo, G.; Matras, M.; Haenen, O.; Olesen, Niels Jørgen; Morin, T. Published in: 17th International Conference on Diseases of Fish And Shellfish Publication date: 2015 Document Version Publisher's PDF, also known as Version of record Link back to DTU Orbit Citation (APA): Cabon, J., Louboutin, L., Castric, J., Bergmann, S. M., Bovo, G., Matras, M., ... Morin, T. (2015). Detection of antibodies specific to koi herpesvirus (KHV) by serum neutralization test. In 17th International Conference on Diseases of Fish And Shellfish: Abstract book (pp. 115-115). [O-107] Las Palmas: European Association of Fish Pathologists. General rights Copyright and moral rights for the publications made accessible in the public portal are retained by the authors and/or other copyright owners and it is a condition of accessing publications that users recognise and abide by the legal requirements associated with these rights. • Users may download and print one copy of any publication from the public portal for the purpose of private study or research. • You may not further distribute the material or use it for any profit-making activity or commercial gain • You may freely distribute the URL identifying the publication in the public portal If you believe that this document breaches copyright please contact us providing details, and we will remove access to the work immediately and investigate your claim. DISCLAIMER: The organizer takes no responsibility for any of the content stated in the abstracts. -
Arenaviridae Astroviridae Filoviridae Flaviviridae Hantaviridae
Hantaviridae 0.7 Filoviridae 0.6 Picornaviridae 0.3 Wenling red spikefish hantavirus Rhinovirus C Ahab virus * Possum enterovirus * Aronnax virus * * Wenling minipizza batfish hantavirus Wenling filefish filovirus Norway rat hunnivirus * Wenling yellow goosefish hantavirus Starbuck virus * * Porcine teschovirus European mole nova virus Human Marburg marburgvirus Mosavirus Asturias virus * * * Tortoise picornavirus Egyptian fruit bat Marburg marburgvirus Banded bullfrog picornavirus * Spanish mole uluguru virus Human Sudan ebolavirus * Black spectacled toad picornavirus * Kilimanjaro virus * * * Crab-eating macaque reston ebolavirus Equine rhinitis A virus Imjin virus * Foot and mouth disease virus Dode virus * Angolan free-tailed bat bombali ebolavirus * * Human cosavirus E Seoul orthohantavirus Little free-tailed bat bombali ebolavirus * African bat icavirus A Tigray hantavirus Human Zaire ebolavirus * Saffold virus * Human choclo virus *Little collared fruit bat ebolavirus Peleg virus * Eastern red scorpionfish picornavirus * Reed vole hantavirus Human bundibugyo ebolavirus * * Isla vista hantavirus * Seal picornavirus Human Tai forest ebolavirus Chicken orivirus Paramyxoviridae 0.4 * Duck picornavirus Hepadnaviridae 0.4 Bildad virus Ned virus Tiger rockfish hepatitis B virus Western African lungfish picornavirus * Pacific spadenose shark paramyxovirus * European eel hepatitis B virus Bluegill picornavirus Nemo virus * Carp picornavirus * African cichlid hepatitis B virus Triplecross lizardfish paramyxovirus * * Fathead minnow picornavirus -
Non-Invasive Surveys of Mammalian Viruses Using Environmental DNA
bioRxiv preprint doi: https://doi.org/10.1101/2020.03.26.009993; this version posted March 29, 2020. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC-ND 4.0 International license. Title Non-invasive surveys of mammalian viruses using environmental DNA Highlights Environmental DNA (water and blood-sucking leeches) provided a non- invasive method of screening wildlife for viruses A comprehensive viral RNA oligonucleotide bait set was developed to capture known and unknown mammalian virus diversity Leech blood meal host determination and viruses identified were congruent Viruses determined from water correlated with known and observed species visiting the water sources In brief Alfano, Dayaram, et al. demonstrate that environmental DNA from southeast Asian leech bloodmeals and waterholes from Africa and Mongolia can be used as to detect viruses circulating in wildlife. These nucleic acid sources may represent an effective non-invasive resource for studying wildlife viral diversity and emerging viruses pre- emergence. bioRxiv preprint doi: https://doi.org/10.1101/2020.03.26.009993; this version posted March 29, 2020. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC-ND 4.0 International license. Non-invasive surveys of mammalian viruses using environmental DNA Niccolo Alfano1,2*, Anisha Dayaram3,4*, Jan Axtner1, Kyriakos Tsangaras5, Marie- Louise Kampmann1,6, Azlan Mohamed1,7, Seth T. -
Evidence to Support Safe Return to Clinical Practice by Oral Health Professionals in Canada During the COVID-19 Pandemic: a Repo
Evidence to support safe return to clinical practice by oral health professionals in Canada during the COVID-19 pandemic: A report prepared for the Office of the Chief Dental Officer of Canada. November 2020 update This evidence synthesis was prepared for the Office of the Chief Dental Officer, based on a comprehensive review under contract by the following: Paul Allison, Faculty of Dentistry, McGill University Raphael Freitas de Souza, Faculty of Dentistry, McGill University Lilian Aboud, Faculty of Dentistry, McGill University Martin Morris, Library, McGill University November 30th, 2020 1 Contents Page Introduction 3 Project goal and specific objectives 3 Methods used to identify and include relevant literature 4 Report structure 5 Summary of update report 5 Report results a) Which patients are at greater risk of the consequences of COVID-19 and so 7 consideration should be given to delaying elective in-person oral health care? b) What are the signs and symptoms of COVID-19 that oral health professionals 9 should screen for prior to providing in-person health care? c) What evidence exists to support patient scheduling, waiting and other non- treatment management measures for in-person oral health care? 10 d) What evidence exists to support the use of various forms of personal protective equipment (PPE) while providing in-person oral health care? 13 e) What evidence exists to support the decontamination and re-use of PPE? 15 f) What evidence exists concerning the provision of aerosol-generating 16 procedures (AGP) as part of in-person -
Rhabdoviridae.Pdf
1 Rhabdoviridae Taxonomy Realm- Ribovira Kingdom- Orthornavirae Phylum- Negarnaviricota Subphylum-Haploviricotina Class- Monjiviricetes Order- Mononegaviriales Family- Rhabdoviridae Genus- Lyssavirus Genus-Ephemerovirus Rhabdoviridae: The family Derivation of names Rhabdoviridae: from rhabdos (Greek) meaning rod, referring to virion morphology. Member taxa Vertebrate host Lyssavirus Novirhabdovirus Perhabdovirus Sprivivirus Tupavirus Vertebrate host, arthropod vector Prepared by Dr. Vandana Gupta Page 1 2 Curiovirus Ephemerovirus Hapavirus Ledantevirus Sripuvirus Tibrovirus Vesiculovirus Invertebrate host Almendravirus Alphanemrhavirus Caligrhavirus Sigmavirus Plant host Cytorhabdovirus Dichorhavirus Nucleorhabdovirus Varicosavirus The family Rhabdoviridae includes 20 genera and 144 species of viruses with negative-sense, single-stranded RNA genomes of approximately 10–16 kb. Virions are typically enveloped with bullet-shaped or bacilliform morphology but non-enveloped filamentous virions have also been reported. The genomes are usually (but not always) single RNA molecules with partially complementary termini. Almost all rhabdovirus genomes have 5 genes encoding the structural proteins (N, P, M, G and L); however, many rhabdovirus genomes encode other proteins in additional genes or in alternative open reading frames (ORFs) within the structural protein genes. The family is ecologically diverse with members infecting plants or animals including mammals, birds, reptiles or fish. Rhabdoviruses are also detected in invertebrates, -
SVCV) in Persistently Infected Koi Cyprinus Carpio
Vol. 143: 169–188, 2021 DISEASES OF AQUATIC ORGANISMS Published online February 25 https://doi.org/10.3354/dao03564 Dis Aquat Org OPEN ACCESS Analytical validation of two RT-qPCR tests and detection of spring viremia of carp virus (SVCV) in persistently infected koi Cyprinus carpio Sharon C. Clouthier1,*, Tamara Schroeder1, Emma K. Bueren2,4, Eric D. Anderson3, Eveline Emmenegger2 1Fisheries & Oceans Canada, Freshwater Institute, Winnipeg, Manitoba R3T 2N6, Canada 2US Geological Survey, Western Fisheries Research Center, Seattle, WA 98115, USA 3Box 28, Group 30, RR2, Ste Anne, Manitoba R5H 1R2, Canada 4Present address: Department of Biological Sciences, Virginia Polytechnic Institute and State University (Virginia Tech), Blacksburg, VA 24061, USA ABSTRACT: Spring viremia of carp virus (SVCV) ia a carp sprivivirus and a member of the genus Sprivivirus within the family Rhabdoviridae. The virus is the etiological agent of spring viremia of carp, a disease of cyprinid species including koi Cyprinus carpio L. and notifiable to the World Or- ganisation for Animal Health. The goal of this study was to explore hypotheses regarding inter- genogroup (Ia to Id) SVCV infection dynamics in juvenile koi and contemporaneously create new reverse-transcription quantitative PCR (RT-qPCR) assays and validate their analytical sensitivity, specificity (ASp) and repeatability for diagnostic detection of SVCV. RT-qPCR diagnostic tests tar- geting the SVCV nucleoprotein (Q2N) or glycoprotein (Q1G) nucleotides were pan-specific for iso- lates typed to SVCV genogroups Ia to Id. The Q2N test had broader ASp than Q1G because Q1G did not detect SVCV isolate 20120450 and Q2N displayed occasional detection of pike fry spriv- ivirus isolate V76. -
Evidence to Support Safe Return to Clinical Practice by Oral Health Professionals in Canada During the COVID- 19 Pandemic: A
Evidence to support safe return to clinical practice by oral health professionals in Canada during the COVID- 19 pandemic: A report prepared for the Office of the Chief Dental Officer of Canada. March 2021 update This evidence synthesis was prepared for the Office of the Chief Dental Officer, based on a comprehensive review under contract by the following: Raphael Freitas de Souza, Faculty of Dentistry, McGill University Paul Allison, Faculty of Dentistry, McGill University Lilian Aboud, Faculty of Dentistry, McGill University Martin Morris, Library, McGill University March 31, 2021 1 Contents Evidence to support safe return to clinical practice by oral health professionals in Canada during the COVID-19 pandemic: A report prepared for the Office of the Chief Dental Officer of Canada. .................................................................................................................................. 1 Foreword to the second update ............................................................................................. 4 Introduction ............................................................................................................................. 5 Project goal............................................................................................................................. 5 Specific objectives .................................................................................................................. 6 Methods used to identify and include relevant literature ...................................................... -
Patogenicidad Microbiana En Medicina Veterinaria Volumen: Virología
Patogenicidad microbiana en Medicina Veterinaria Volumen: Virología Fabiana A. Moredo, Alejandra E. Larsen, Nestor O. Stanchi (Coordinadores) FACULTAD DE CIENCIAS VETERINARIAS PATOGENICIDAD MICROBIANA EN MEDICINA VETERINARIA VOLUMEN: VIROLOGÍA Fabiana A. Moredo Alejandra E. Larsen Nestor O. Stanchi (Coordinadores) Facultad de Ciencias Veterinarias 1 A nuestras familias 2 Agradecimientos Nuestro agradecimiento a todos los colegas docentes de la Facultad de Ciencias Veterinarias y en especial a la Universidad Nacional de La Plata por darnos esta oportunidad. 3 Índice VOLUMEN 2 Virología Capítulo 1 Características generales de los virus Cecilia M. Galosi, Nadia A. Fuentealba____________________________________________6 Capítulo 2 Arterivirus Germán E. Metz y María M. Abeyá______________________________________________28 Capítulo 3 Herpesvirus Cecilia M. Galosi, María E. Bravi, Mariela R. Scrochi ________________________________37 Capítulo 4 Orthomixovirus Guillermo H. Sguazza y María E. Bravi___________________________________________49 Capítulo 5 Paramixovirus Marco A. Tizzano____________________________________________________________61 Capítulo 6 Parvovirus Nadia A Fuentealba, María S. Serena____________________________________________71 Capítulo 7 Retrovirus Carlos J. Panei, Viviana Cid de la Paz____________________________________________81 Capítulo 8 Rhabdovirus Marcelo R. Pecoraro, Leandro Picotto____________________________________________92 Capítulo 9 Togavirus María G. Echeverría, María Laura Susevich______________________________________104 -
Merida Virus, a Putative Novel Rhabdovirus Discovered in Culex and Ochlerotatus Spp
Journal of General Virology (2016), 97, 977–987 DOI 10.1099/jgv.0.000424 Merida virus, a putative novel rhabdovirus discovered in Culex and Ochlerotatus spp. mosquitoes in the Yucatan Peninsula of Mexico Jermilia Charles,1 Andrew E. Firth,2 Maria A. Loron˜o-Pino,3 Julian E. Garcia-Rejon,3 Jose A. Farfan-Ale,3 W. Ian Lipkin,4 Bradley J. Blitvich1 and Thomas Briese4 Correspondence 1Department of Veterinary Microbiology and Preventive Medicine, College of Veterinary Medicine, Bradley J. Blitvich Iowa State University, Ames, IA, USA [email protected] 2Department of Pathology, University of Cambridge, Cambridge, UK 3Laboratorio de Arbovirologı´a, Centro de Investigaciones Regionales Dr Hideyo Noguchi, Universidad Auto´noma de Yucata´n, Me´rida, Yucata´n, Me´xico 4Center for Infection and Immunity, Mailman School of Public Health, Columbia University, New York, NY, USA Sequences corresponding to a putative, novel rhabdovirus [designated Merida virus (MERDV)] were initially detected in a pool of Culex quinquefasciatus collected in the Yucatan Peninsula of Mexico. The entire genome was sequenced, revealing 11 798 nt and five major ORFs, which encode the nucleoprotein (N), phosphoprotein (P), matrix protein (M), glycoprotein (G) and RNA-dependent RNA polymerase (L). The deduced amino acid sequences of the N, G and L proteins have no more than 24, 38 and 43 % identity, respectively, to the corresponding sequences of all other known rhabdoviruses, whereas those of the P and M proteins have no significant identity with any sequences in GenBank and their identity is only suggested based on their genome position. Using specific reverse transcription-PCR assays established from the genome sequence, 27 571 C. -
Using Label Free Proteomics and RNA Sequencing to Investigate the Human Respiratory Syncytial Virus and the Effects of the Antiviral Ribavirin
Using label free proteomics and RNA sequencing to investigate the human respiratory syncytial virus and the effects of the antiviral ribavirin Thesis submitted in accordance with the requirements of the University of Liverpool for the degree of Doctor in Philosophy by Waleed A. Aljabr November 2016 i AUTHOR’S DECLARATION Apart from the help and advice acknowledged, this thesis represents the unaided work of the author ………………………………………………. Waleed Abdurhaman Suliman Aljabr November 2016 This research was carried out in the Department of Infection Biology and Institute of Infection and Global Health, University of Liverpool ii DEDICATION I dedicate this work to my parents who pray me constantly and inspire me. A dedication also goes to my brothers, sisters and my daughters (Leen, Almas and Yara) and my son (Luay) who were always encouraging and supportive throughout my PhD. Finally, special thanks go to my wife (Amal) for her encouragement and support during this time and for looking after my children. iii ACKNOWLEDGEMENTS In the name of Allah, the Most Gracious, the Most Merciful. All Thanks to Allah the Creator of the universe and the mastermind of everything. I would like to express my sincere gratitude to my supervisor Prof Julian Hiscox for the continuous support of my PhD study and research, for his motivation, enthusiasm, patience and wide knowledge. This work would not have been possible without the help and support of my principle supervisor. Very special thanks to my second supervisor Prof James Stuart for his support and encouragement. I am also indebted to my PhD advisors, Prof Stuart Carter and Dr Jane Hodgkinson who have been invaluable on both an academic and a personal level, for which I am extremely grateful. -
Taxonomy Bovine Ephemeral Fever Virus Kotonkan Virus Murrumbidgee
Taxonomy Bovine ephemeral fever virus Kotonkan virus Murrumbidgee virus Murrumbidgee virus Murrumbidgee virus Ngaingan virus Tibrogargan virus Circovirus-like genome BBC-A Circovirus-like genome CB-A Circovirus-like genome CB-B Circovirus-like genome RW-A Circovirus-like genome RW-B Circovirus-like genome RW-C Circovirus-like genome RW-D Circovirus-like genome RW-E Circovirus-like genome SAR-A Circovirus-like genome SAR-B Dragonfly larvae associated circular virus-1 Dragonfly larvae associated circular virus-10 Dragonfly larvae associated circular virus-2 Dragonfly larvae associated circular virus-3 Dragonfly larvae associated circular virus-4 Dragonfly larvae associated circular virus-5 Dragonfly larvae associated circular virus-6 Dragonfly larvae associated circular virus-7 Dragonfly larvae associated circular virus-8 Dragonfly larvae associated circular virus-9 Marine RNA virus JP-A Marine RNA virus JP-B Marine RNA virus SOG Ostreid herpesvirus 1 Pig stool associated circular ssDNA virus Pig stool associated circular ssDNA virus GER2011 Pithovirus sibericum Porcine associated stool circular virus Porcine stool-associated circular virus 2 Porcine stool-associated circular virus 3 Sclerotinia sclerotiorum hypovirulence associated DNA virus 1 Wallerfield virus AKR (endogenous) murine leukemia virus ARV-138 ARV-176 Abelson murine leukemia virus Acartia tonsa copepod circovirus Adeno-associated virus - 1 Adeno-associated virus - 4 Adeno-associated virus - 6 Adeno-associated virus - 7 Adeno-associated virus - 8 African elephant polyomavirus