microorganisms Article Genome-Resolved Metagenomic Analyses Reveal the Presence of a Putative Bacterial Endosymbiont in an Avian Nasal Mite (Rhinonyssidae; Mesostigmata) Carolina Osuna-Mascaró 1,*, Jorge Doña 2,3, Kevin P. Johnson 2 and Manuel de Rojas 4,* 1 Department of Biology, University of Nevada, 1664 N Virginia St., Reno, NV 89557, USA 2 Illinois Natural History Survey, Prairie Research Institute, University of Illinois at Urbana-Champaign, Champaign, IL 61820, USA;
[email protected] (J.D.);
[email protected] (K.P.J.) 3 Departamento de Biología Animal, Universitario de Cartuja, Calle Prof. Vicente Callao, 3, 18011 Granada, Spain 4 Department of Microbiology and Parasitology, Faculty of Pharmacy, Universidad de Sevilla, Calle San Fernando, 4, 41004 Sevilla, Spain * Correspondence:
[email protected] (C.O.-M.);
[email protected] (M.d.R.) Abstract: Rhinonyssidae (Mesostigmata) is a family of nasal mites only found in birds. All species are hematophagous endoparasites, which may damage the nasal cavities of birds, and also could be potential reservoirs or vectors of other infections. However, the role of members of Rhinonyssidae as disease vectors in wild bird populations remains uninvestigated, with studies of the microbiomes of Rhinonyssidae being almost non-existent. In the nasal mite (Tinaminyssus melloi) from rock doves (Columba livia), a previous study found evidence of a highly abundant putatively endosymbiotic bacteria from Class Alphaproteobacteria. Here, we expanded the sample size of this species (two Citation: Osuna-Mascaró, C.; Doña, different hosts- ten nasal mites from two independent samples per host), incorporated contamination J.; Johnson, K.P.; de Rojas, M. Genome-Resolved Metagenomic controls, and increased sequencing depth in shotgun sequencing and genome-resolved metagenomic Analyses Reveal the Presence of a analyses.