VSC HPC Tutorial for Vrije Universiteit Brussel Linux Users
VLAAMS SUPERCOMPUTER Innovative Computing CENTRUM for A Smarter Flanders HPC Tutorial Last updated: September 29 2021 For Linux Users Authors: Franky Backeljauw5, Stefan Becuwe5, Geert Jan Bex3, Geert Borstlap5, Jasper Devreker2, Stijn De Weirdt2, Andy Georges2, Balázs Hajgató1,2, Kenneth Hoste2, Kurt Lust5, Samuel Moors1, Ward Poelmans1, Mag Selwa4, Álvaro Simón García2, Bert Tijskens5, Jens Timmerman2, Kenneth Waegeman2, Toon Willems2 Acknowledgement: VSCentrum.be 1Free University of Brussels 2Ghent University 3Hasselt University 4KU Leuven 5University of Antwerp 1 Audience: This HPC Tutorial is designed for researchers at the Vrije Universiteit Brussel and affiliated institutes who are in need of computational power (computer resources) and wish to explore and use the High Performance Computing (HPC) core facilities of the Flemish Supercomputing Centre (VSC) to execute their computationally intensive tasks. The audience may be completely unaware of the VUB-HPC concepts but must have some basic understanding of computers and computer programming. Contents: This Beginners Part of this tutorial gives answers to the typical questions that a new VUB- HPC user has. The aim is to learn how to make use of the HPC. Beginners Part Questions chapter title What is a VUB-HPC exactly? 1 Introduction to HPC Can it solve my computational needs? How to get an account? 2 Getting an HPC Account How do I connect to the VUB-HPC and 3 Connecting to the HPC infrastructure transfer my files and programs? How to start background jobs? 4 Running batch jobs How to start jobs with user interaction? 5 Running interactive jobs Where do the input and output go? 6 Running jobs with input/output data Where to collect my results? Can I speed up my program by explor- 7 Multi core jobs/Parallel Computing ing parallel programming techniques? Troubleshooting 8 Troubleshooting What are the rules and priorities of 9 HPC Policies jobs? FAQ 10 Frequently Asked Questions The Advanced Part focuses on in-depth issues.
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