Minabea Ozakii N. Gen. Et N. Sp., a New Remarkable Alcyonarian Type with Dimorphic Polyps (With 4 Text-Figures)
Total Page:16
File Type:pdf, Size:1020Kb
Load more
Recommended publications
-
A Time-Calibrated Molecular Phylogeny of the Precious Corals: Reconciling Discrepancies in the Taxonomic Classification and Insights Into Their Evolutionary History
A time-calibrated molecular phylogeny of the precious corals: reconciling discrepancies in the taxonomic classification and insights into their evolutionary history The Harvard community has made this article openly available. Please share how this access benefits you. Your story matters Citation Ardila, Néstor E, Gonzalo Giribet, and Juan A Sánchez. 2012. A time- calibrated molecular phylogeny of the precious corals: reconciling discrepancies in the taxonomic classification and insights into their evolutionary history. BMC Evolutionary Biology 12: 246. Published Version doi:10.1186/1471-2148-12-246 Citable link http://nrs.harvard.edu/urn-3:HUL.InstRepos:11802886 Terms of Use This article was downloaded from Harvard University’s DASH repository, and is made available under the terms and conditions applicable to Other Posted Material, as set forth at http:// nrs.harvard.edu/urn-3:HUL.InstRepos:dash.current.terms-of- use#LAA A time-calibrated molecular phylogeny of the precious corals: reconciling discrepancies in the taxonomic classification and insights into their evolutionary history Ardila et al. Ardila et al. BMC Evolutionary Biology 2012, 12:246 http://www.biomedcentral.com/1471-2148/12/246 Ardila et al. BMC Evolutionary Biology 2012, 12:246 http://www.biomedcentral.com/1471-2148/12/246 RESEARCH ARTICLE Open Access A time-calibrated molecular phylogeny of the precious corals: reconciling discrepancies in the taxonomic classification and insights into their evolutionary history Néstor E Ardila1,3, Gonzalo Giribet2 and Juan A Sánchez1* Abstract Background: Seamount-associated faunas are often considered highly endemic but isolation and diversification processes leading to such endemism have been poorly documented at those depths. -
Habitat-Forming Deep-Sea Corals in the Northeast Pacific Ocean
Habitat-forming deep-sea corals in the Northeast Pacific Ocean Peter Etnoyer1, Lance E. Morgan2 1 Aquanautix Consulting, 3777 Griffith View Drive, Los Angeles, CA 90039, USA ([email protected]) 2 Marine Conservation Biology Institute, 4878 Warm Springs Rd., Glen Ellen, CA 95442, USA Abstract. We define habitat-forming deep-sea corals as those families of octocorals, hexacorals, and stylasterids with species that live deeper than 200 m, with a majority of species exhibiting complex branching morphology and a sufficient size to provide substrata or refugia to associated species. We present 2,649 records (name, geoposition, depth, and data quality) from eleven institutions on eight habitat- forming deep-sea coral families, including octocorals in the families Coralliidae, Isididae, Paragorgiidae and Primnoidae, hexacorals in the families Antipathidae, Oculinidae and Caryophylliidae, and stylasterids in the family Stylasteridae. The data are ranked according to record quality. We compare family range and distribution as predicted by historical records to the family extent as informed by recent collections aboard the National Oceanic of Atmospheric Administration (NOAA) Office of Ocean Exploration 2002 Gulf of Alaska Seamount Expedition (GOASEX). We present a map of one of these families, the Primnoidae. We find that these habitat-forming families are widespread throughout the Northeast Pacific, save Caryophylliidae (Lophelia sp.) and Oculinidae (Madrepora sp.), which are limited in occurrence. Most coral records fall on the continental shelves, in Alaska, or Hawaii, likely reflecting research effort. The vertical range of these families, based on large samples (N >200), is impressive. Four families have maximum-recorded depths deeper than 1500 m, and minimum depths shallower than 40 m. -
Genetic Divergence and Polyphyly in the Octocoral Genus Swiftia [Cnidaria: Octocorallia], Including a Species Impacted by the DWH Oil Spill
diversity Article Genetic Divergence and Polyphyly in the Octocoral Genus Swiftia [Cnidaria: Octocorallia], Including a Species Impacted by the DWH Oil Spill Janessy Frometa 1,2,* , Peter J. Etnoyer 2, Andrea M. Quattrini 3, Santiago Herrera 4 and Thomas W. Greig 2 1 CSS Dynamac, Inc., 10301 Democracy Lane, Suite 300, Fairfax, VA 22030, USA 2 Hollings Marine Laboratory, NOAA National Centers for Coastal Ocean Sciences, National Ocean Service, National Oceanic and Atmospheric Administration, 331 Fort Johnson Rd, Charleston, SC 29412, USA; [email protected] (P.J.E.); [email protected] (T.W.G.) 3 Department of Invertebrate Zoology, National Museum of Natural History, Smithsonian Institution, 10th and Constitution Ave NW, Washington, DC 20560, USA; [email protected] 4 Department of Biological Sciences, Lehigh University, 111 Research Dr, Bethlehem, PA 18015, USA; [email protected] * Correspondence: [email protected] Abstract: Mesophotic coral ecosystems (MCEs) are recognized around the world as diverse and ecologically important habitats. In the northern Gulf of Mexico (GoMx), MCEs are rocky reefs with abundant black corals and octocorals, including the species Swiftia exserta. Surveys following the Deepwater Horizon (DWH) oil spill in 2010 revealed significant injury to these and other species, the restoration of which requires an in-depth understanding of the biology, ecology, and genetic diversity of each species. To support a larger population connectivity study of impacted octocorals in the Citation: Frometa, J.; Etnoyer, P.J.; GoMx, this study combined sequences of mtMutS and nuclear 28S rDNA to confirm the identity Quattrini, A.M.; Herrera, S.; Greig, Swiftia T.W. -
Curriculum Vitae Santiago Herrera Massachusetts Institute of Technology & Woods Hole Oceanographic Institu
Curriculum Vitae Santiago Herrera CURRENT AFFILIATION Massachusetts Institute of Technology & Woods Hole Oceanographic Institution Shank Molecular Ecology and Evolution Laboratory Woods Hole Oceanographic Institution 2‐40 Redfield Laboratory, MS#33 Woods Hole, MA 02543, USA Phone: +1 508 289 3906 E‐mail: [email protected] OR [email protected] EDUCATION PhD Massachusetts Institute of Technology & Woods Hole Oceanographic Institution Joint Program, MA, USA Biological Oceanography, eXpected 2014 Timothy Shank PhD MS Universidad de los Andes, Bogotá, Colombia Biological Sciences, eXpected 2009 Evolution in the deep ocean: phylogeny of the bubblegum octocorals (Paragorgiidae) and the phylogeography and genetic diversity of Paragorgia arborea (Linnaeus) Juan A. Sánchez PhD BS Universidad de los Andes, Bogotá, Colombia Biology, 2008 Juan A. Sánchez PhD and Santiago Madriñán PhD BS Universidad de los Andes, Bogotá, Colombia Microbiology, 2008 Juan A. Sánchez PhD and Silvia Restrepo PhD RESEARCH INTERESTS Systematics, evolutionary biology, population connectivity, and bio/phylogeography of marine organisms; conservation of coral reefs and deep‐sea ecosystems, worldwide. PROFESSIONAL SOCIETIES Sigma Xi, The Scientific Research Society 2007; Society of Systematic Biologists 2008 Updated June 2009 POSITIONS - Graduated Teaching Assistant and tutor of the Phylogenetic Systematics laboratory, Universidad de los Andes, Bogotá, Colombia. Juan A. Sánchez PhD 2009 - Fellow; Smithsonian Graduate Fellow, National Museum of Natural History, Smithsonian Institution, Invertebrate Zoology Department & Laboratories of Analytical Biology, Washington, DC. Project Title: Connectivity across the deep ocean: phylogeography and morphological variation of the cosmopolitan bubblegum octocoral Paragorgia arborea (Linnaeus). Stephen D. Cairns PhD and Allen G. Collins PhD 20082009 - Intern; United States Antarctic Program, Marine Invertebrate Collections. National Museum of Natural History, Smithsonian Institution, Invertebrate Zoology Department. -
CNIDARIA Corals, Medusae, Hydroids, Myxozoans
FOUR Phylum CNIDARIA corals, medusae, hydroids, myxozoans STEPHEN D. CAIRNS, LISA-ANN GERSHWIN, FRED J. BROOK, PHILIP PUGH, ELLIOT W. Dawson, OscaR OcaÑA V., WILLEM VERvooRT, GARY WILLIAMS, JEANETTE E. Watson, DENNIS M. OPREsko, PETER SCHUCHERT, P. MICHAEL HINE, DENNIS P. GORDON, HAMISH J. CAMPBELL, ANTHONY J. WRIGHT, JUAN A. SÁNCHEZ, DAPHNE G. FAUTIN his ancient phylum of mostly marine organisms is best known for its contribution to geomorphological features, forming thousands of square Tkilometres of coral reefs in warm tropical waters. Their fossil remains contribute to some limestones. Cnidarians are also significant components of the plankton, where large medusae – popularly called jellyfish – and colonial forms like Portuguese man-of-war and stringy siphonophores prey on other organisms including small fish. Some of these species are justly feared by humans for their stings, which in some cases can be fatal. Certainly, most New Zealanders will have encountered cnidarians when rambling along beaches and fossicking in rock pools where sea anemones and diminutive bushy hydroids abound. In New Zealand’s fiords and in deeper water on seamounts, black corals and branching gorgonians can form veritable trees five metres high or more. In contrast, inland inhabitants of continental landmasses who have never, or rarely, seen an ocean or visited a seashore can hardly be impressed with the Cnidaria as a phylum – freshwater cnidarians are relatively few, restricted to tiny hydras, the branching hydroid Cordylophora, and rare medusae. Worldwide, there are about 10,000 described species, with perhaps half as many again undescribed. All cnidarians have nettle cells known as nematocysts (or cnidae – from the Greek, knide, a nettle), extraordinarily complex structures that are effectively invaginated coiled tubes within a cell. -
Rocky Intertidal, Mudflats and Beaches, and Eelgrass Beds
Appendix 5.4, Page 1 Appendix 5.4 Marine and Coastline Habitats Featured Species-associated Intertidal Habitats: Rocky Intertidal, Mudflats and Beaches, and Eelgrass Beds A swath of intertidal habitat occurs wherever the ocean meets the shore. At 44,000 miles, Alaska’s shoreline is more than double the shoreline for the entire Lower 48 states (ACMP 2005). This extensive shoreline creates an impressive abundance and diversity of habitats. Five physical factors predominantly control the distribution and abundance of biota in the intertidal zone: wave energy, bottom type (substrate), tidal exposure, temperature, and most important, salinity (Dethier and Schoch 2000; Ricketts and Calvin 1968). The distribution of many commercially important fishes and crustaceans with particular salinity regimes has led to the description of “salinity zones,” which can be used as a basis for mapping these resources (Bulger et al. 1993; Christensen et al. 1997). A new methodology called SCALE (Shoreline Classification and Landscape Extrapolation) has the ability to separate the roles of sediment type, salinity, wave action, and other factors controlling estuarine community distribution and abundance. This section of Alaska’s CWCS focuses on 3 main types of intertidal habitat: rocky intertidal, mudflats and beaches, and eelgrass beds. Tidal marshes, which are also intertidal habitats, are discussed in the Wetlands section, Appendix 5.3, of the CWCS. Rocky intertidal habitats can be categorized into 3 main types: (1) exposed, rocky shores composed of steeply dipping, vertical bedrock that experience high-to- moderate wave energy; (2) exposed, wave-cut platforms consisting of wave-cut or low-lying bedrock that experience high-to-moderate wave energy; and (3) sheltered, rocky shores composed of vertical rock walls, bedrock outcrops, wide rock platforms, and boulder-strewn ledges and usually found along sheltered bays or along the inside of bays and coves. -
Deep-Sea Coral Taxa in the U.S. Southeast Region: Depth and Geographic Distribution (V
Deep-Sea Coral Taxa in the U.S. Southeast Region: Depth and Geographic Distribution (v. 2020) by Thomas F. Hourigan1, Stephen D. Cairns2, John K. Reed3, and Steve W. Ross4 1. NOAA Deep Sea Coral Research and Technology Program, Office of Habitat Conservation, Silver Spring, MD 2. National Museum of Natural History, Smithsonian Institution, Washington, DC 3. Cooperative Institute of Ocean Exploration, Research, and Technology, Harbor Branch Oceanographic Institute, Florida Atlantic University, Fort Pierce, FL 4. Center for Marine Science, University of North Carolina, Wilmington This annex to the U.S. Southeast chapter in “The State of Deep-Sea Coral and Sponge Ecosystems in the United States” provides a list of deep-sea coral taxa in the Phylum Cnidaria, Classes Anthozoa and Hydrozoa, known to occur in U.S. waters from Cape Hatteras to the Florida Keys (Figure 1). Deep-sea corals are defined as azooxanthellate, heterotrophic coral species occurring in waters 50 meters deep or more. Details are provided on the vertical and geographic extent of each species (Table 1). This list is an update of the peer-reviewed 2017 list (Hourigan et al. 2017) and includes taxa recognized through 2019, including one newly described species. Taxonomic names are generally those currently accepted in the World Register of Marine Species (WoRMS), and are arranged by order, and alphabetically within order by family, genus, and species. Data sources (references) listed are those principally used to establish geographic and depth distribution. Figure 1. U.S. Southeast region delimiting the geographic boundaries considered in this work. The region extends from Cape Hatteras to the Florida Keys and includes the Jacksonville Lithoherms (JL), Blake Plateau (BP), Oculina Coral Mounds (OC), Miami Terrace (MT), Pourtalès Terrace (PT), Florida Straits (FS), and Agassiz/Tortugas Valleys (AT). -
Diversity, Distribution and Spatial Structure of the Cold-Water Coral
EGU Journal Logos (RGB) Open Access Open Access Open Access Advances in Annales Nonlinear Processes Geosciences Geophysicae in Geophysics Open Access Open Access Natural Hazards Natural Hazards and Earth System and Earth System Sciences Sciences Discussions Open Access Open Access Atmospheric Atmospheric Chemistry Chemistry and Physics and Physics Discussions Open Access Open Access Atmospheric Atmospheric Measurement Measurement Techniques Techniques Discussions Open Access Biogeosciences, 10, 4009–4036, 2013 Open Access www.biogeosciences.net/10/4009/2013/ Biogeosciences doi:10.5194/bg-10-4009-2013 Biogeosciences Discussions © Author(s) 2013. CC Attribution 3.0 License. Open Access Open Access Climate Climate of the Past of the Past Discussions Diversity, distribution and spatial structure of the cold-water coral Open Access Open Access fauna of the Azores (NE Atlantic) Earth System Earth System Dynamics 1 1 1 1 ´ 1 2Dynamics 1 A. Braga-Henriques , F. M. Porteiro , P. A. Ribeiro , V. de Matos , I. Sampaio , O. Ocana˜ , and R. S. Santos Discussions 1Centre of IMAR of the University of the Azores, Department of Oceanography and Fisheries (DOP) and LARSyS Associated Laboratory, Rua Prof. Dr. Frederico Machado 4, 9901-862 Horta, Portugal Open Access Open Access 2Fundacion´ Museo del Mar, Autoridad Portuaria de Ceuta, Muelle Canonero,˜ 51001 Ceuta (NorthGeoscientific Africa), Spain Geoscientific Instrumentation Instrumentation Correspondence to: A. Braga-Henriques ([email protected]) Methods and Methods and Received: 29 November 2012 – Published in Biogeosciences Discuss.: 9 January 2013 Data Systems Data Systems Revised: 9 April 2013 – Accepted: 8 May 2013 – Published: 19 June 2013 Discussions Open Access Open Access Geoscientific Geoscientific Abstract. Cold-water corals are widely considered as impor- may instead reflect assemblage variability among features. -
Deep-Sea Coral Taxa in the Alaska Region: Depth and Geographical Distribution (V
Deep-Sea Coral Taxa in the Alaska Region: Depth and Geographical Distribution (v. 2020) Robert P. Stone1 and Stephen D. Cairns2 1. NOAA Auke Bay Laboratories, Alaska Fisheries Science Center, Juneau, AK 2. National Museum of Natural History, Smithsonian Institution, Washington, DC This annex to the Alaska regional chapter in “The State of Deep-Sea Coral Ecosystems of the United States” lists deep-sea coral species in the Phylum Cnidaria, Classes Anthozoa and Hydrozoa, known to occur in the U.S. Alaska region (Figure 1). Deep-sea corals are defined as azooxanthellate, heterotrophic coral species occurring in waters 50 meters deep or more. Details are provided on the vertical and geographic extent of each species (Table 1). This list is an update of the peer-reviewed 2017 list (Stone and Cairns 2017) and includes taxa recognized through 2020. Records are drawn from the published literature (including species descriptions) and from specimen collections that have been definitively identified by experts through examination of microscopic characters. Video records collected by the senior author have also been used if considered highly reliable; that is, in situ identifications were made based on an expertly identified voucher specimen collected nearby. Taxonomic names are generally those currently accepted in the World Register of Marine Species (WoRMS), and are arranged by order, and alphabetically within order by suborder (if applicable), family, genus, and species. Data sources (references) listed are those principally used to establish geographic and depth distribution, and are numbered accordingly. In summary, we have confirmed the presence of 142 unique coral taxa in Alaskan waters, including three species of alcyonaceans described since our 2017 list. -
Phylogenetic Diversity of the Cold Water Octocoral Paragorgia Arborea (Linnaeus, 1758) Off the East Coast of Canada
www.ccsenet.org/ijb International Journal of Biology Vol. 3, No. 1; January 2011 Phylogenetic Diversity of the Cold Water Octocoral Paragorgia arborea (Linnaeus, 1758) off the East Coast of Canada Kevin B. Strychar (Corresponding author) Department of Life Sciences, Texas A & M University – Corpus Christi Corpus Christi, Texas, 78412, USA Tel: 361-825-5883 E-mail: [email protected] Ellen L. Kenchington & Lorraine C. Hamilton Department of Fisheries and Oceans, Bedford Institute of Oceanography Dartmouth, Nova Scotia, Canada David B. Scott Dalhousie University, Department of Earth Sciences, Halifax, Nova Scotia, Canada Abstract Commonly called “bubblegum coral’, Paragorgia is a genus of cold-water gorgonian coral that has a broad global distribution and is eurybathic from depths of meters to kilometers. Such ecological breadth, however, may be confounded by the presence of cryptic species. In this study the genetic distances of various Paragorgia spp. across their distribution and depth range along the Canadian mid-Atlantic margin using 18S ribosomal DNA sequences were compared. Morphometric and 18S evidence show that although appearing closely related, only one species of cold-water Paragorgia, called P. arborea, predominates in this region. However, 18S evidence from corals collected at deep depths located at one site, called the Stone Fence, indicate that a significant amount of divergence exists and other species may also be present. Such new light provides a need for further genetic testing using alternative methods (e.g. microsatellites), which could reveal new lineages that may have considerable ecological and/or taxonomic importance. Keywords: Cold-water coral, Deep-sea coral, Paragorgiidae, Paragorgia, 18S rDNA 1. -
Review of Morris Et
Biogeosciences Discuss., 9, C7187–C7192, 2013 Biogeosciences www.biogeosciences-discuss.net/9/C7187/2013/ BGD Discussions © Author(s) 2013. This work is distributed under 9, C7187–C7192, 2013 the Creative Commons Attribute 3.0 License. Interactive Comment Interactive comment on “Comprehensive phylogenetic reconstruction of relationships in Octocorallia (Cnidaria: Anthozoa) from the Atlantic ocean using mtMutS and nad2 genes tree reconstructions” by K. J. Morris et al. Anonymous Referee #1 Received and published: 10 January 2013 General Comments Full Screen / Esc The most comprehensive phylogenetic analysis of the sub-class Octocorallia published to date is that of McFadden et al. (2006), who used two mitochondrial markers (mtMutS Printer-friendly Version and ND2) to reconstruct the phylogenetic relationships among 115 genera belonging Interactive Discussion to 46 families representing all recognized orders and sub-ordinal groups of octocorals. Although never explicitly stated, the broader goal of this manuscript appears to be to Discussion Paper address weaknesses in the taxonomic sampling in McFadden et al.’s paper by adding 87 species, the majority from Paragorgiidae and Isididae, two families that were not C7187 represented in the earlier phylogeny. Inexplicably, however, the authors have chosen not to simply add representatives of those taxa to the cosmopolitan dataset of McFad- BGD den et al., but rather to limit their phylogenetic reconstruction to species occurring in 9, C7187–C7192, 2013 the Atlantic. They do not justify this decision, -
Deep-Sea Coral Taxa in the U.S. West Coast Region: Depth and Geographic Distribution (V
Deep-Sea Coral Taxa in the U.S. West Coast Region: Depth and Geographic Distribution (v. 2020) by Curt E. Whitmire1, M. Elizabeth Clarke2, Mary M. Yoklavich3, Meredith V. Everett2, Elizabeth A. Horvath4, Thomas F. Hourigan5, and Stephen D. Cairns6 1. NOAA Fishery Resource Analysis & Monitoring Division, Northwest Fisheries Science Center, Monterey, CA 2. NOAA Northwest Fisheries Science Center, Seattle, WA 3. NOAA Fisheries Ecology Division, Southwest Fisheries Science Center, Santa Cruz, CA 4. Westmont College, Santa Barbara, CA; Invertebrate Laboratory, Santa Barbara Museum of Natural History, Santa Barbara, CA 5. NOAA Deep Sea Coral Research and Technology Program, Office of Habitat Conservation, Silver Spring, MD 6. National Museum of Natural History, Smithsonian Institution, Washington, DC This annex to the U.S. West Coast chapter in “The State of Deep-Sea Coral and Sponge Ecosystems of the United States” provides a list of deep-sea coral taxa in the Phylum Cnidaria, Classes Anthozoa and Hydrozoa, known to occur in U.S. waters off Washington, Oregon, and California (Figure 1). Deep-sea corals are defined as azooxanthellate, heterotrophic coral species occurring in waters 50 meters deep or more. Details are provided on the vertical and geographic extent of each species (Table 1). This list is an update of the peer-reviewed 2017 list by Whitmire et al. (2017) and includes taxa recognized through 2019. Taxonomic names are generally those currently accepted in the World Register of Marine Species (WoRMS), and are arranged by order, and alphabetically within order by family, genus, and species. Data sources (references) listed are those principally used to establish geographic and depth distribution.