Tumor Suppressive Microrna-375 Regulates Lactate Dehydrogenase B in Maxillary Sinus Squamous Cell Carcinoma

Total Page:16

File Type:pdf, Size:1020Kb

Tumor Suppressive Microrna-375 Regulates Lactate Dehydrogenase B in Maxillary Sinus Squamous Cell Carcinoma INTERNATIONAL JOURNAL OF ONCOLOGY 40: 185-193, 2012 Tumor suppressive microRNA-375 regulates lactate dehydrogenase B in maxillary sinus squamous cell carcinoma TAKASHI KINoshita1,2, NIjIRo Nohata1,2, HIRoFUMI YoSHINo3, ToYoYUKI HANAzAwA2, NAoKo KIKKAwA2, LISA FUjIMURA4, TAKeSHI CHIYoMARU3, KAzUMoRI KAwAKAMI3, HIDeKI eNoKIDA3, Masayuki NAKAGAwA3, Yoshitaka oKAMoTo2 and NAoHIKo SeKI1 Departments of 1Functional Genomics, 2otorhinolaryngology/Head and Neck Surgery, Chiba University Graduate School of Medicine, 1-8-1 Inohana Chuo-ku, Chiba 260-8670; 3Department of Urology, Graduate School of Medical and Dental Sciences, Kagoshima University, 8-35-1 Sakuragaoka, Kagoshima 890-8520; 4Biomedical Research Center, Chiba University, 1-8-1 Inohana Chuo-ku, Chiba 260-8670, japan Received july 6, 2011; Accepted August 23, 2011 DoI: 10.3892/ijo.2011.1196 Abstract. The expression of microRNA-375 (miR-375) is head and neck tumors, with an annual incidence of 0.5-1.0 per significantly reduced in cancer tissues of maxillary sinus squa- 100,000 people (1,2). Since the clinical symptoms of patients mous cell carcinoma (MSSCC). The aim of this study was to with MSSCC are very insidious, tumors are often diagnosed at investigate the functional significance ofmiR-375 and a possible advanced stages. Despite advances in multimodality therapy regulatory role in the MSSCC networks. Restoration of miR-375 including surgery, radiotherapy and chemotherapy, the 5-year significantly inhibited cancer cell proliferation and invasion survival rate for MSSCC has remained ~50%. Although regional in IMC-3 cells, suggesting that miR-375 functions as a tumor lymph node metastasis and distant metastasis are uncommon suppressor in MSSCC. Genome-wide gene expression data and (20%), the high rate of locoregional recurrence (60%) contributes luciferase reporter assays indicated that lactate dehydro genase B to poor survival (3). The results of epidemiological studies have (LDHB) was directly regulated by miR-375. Cancer cell prolif- suggested that occupational exposures to leather, wood dust, eration and invasion were significantly inhibited by transfection nickel, arsenic and formaldehyde are risk factors for MSSCC of si-LDHB into IMC-3 cells, suggesting that LDHB may play (4-6); a point of divergence from head and neck squamous cell a role in MSSCC oncogenic function. In clinical MSSCC carcinomas (HNSCC) of the tongue, oral cavity and pharynx. specimens, LDHB mRNA levels were up-regulated in cancer Few reports have performed genome analysis of MSSCC. tissues, which were inversely correlated with the expression of Understanding the molecular oncogenic pathways underlying miR-375. In addition, Kaplan-Meier curves and log-rank tests MSSCC could significantly improve diagnosis, therapy, and revealed that the high mRNA expression levels of LDHB had disease prevention. a significant adverse effect on survival rate. The identification Growing evidence suggests that carcinogenesis is induced of a cancer network regulated by the miR-375 tumor suppressor by overactivation of pro-oncogenic pathways and inactivation could provide new insights into the molecular mechanisms of of tumor-suppressive pathways (7). In cancer pathways, normal MSSCC oncogenesis. regulatory mechanisms are disrupted by aberrant expression of microRNA (miRNA) (8). miRNAs are a class of small Introduction non-coding RNA molecules consisting of 19-22 nucleotides that are involved in a variety of biological processes including Maxillary sinus squamous cell carcinoma (MSSCC) is a development, differentiation, apoptosis, and cell proliferation. malignant epithelial tumor originating in the respiratory They regulate gene expression through translational repression mucosa of the maxillary sinus. MSSCC comprises 2-3% of all and mRNA cleavage (9). Bioinformatic predictions indicate that miRNAs regulate >30% of protein coding genes (10). So far, 1424 human miRNAs have been registered at miRBase release 17.0 (http://microrna.sanger.ac.uk/). miRNAs contribute to the initiation and development of various types of cancers (11). Correspondence to: Dr Naohiko Seki, Department of Functional Genomics, Chiba University Graduate School of Medicine, 1-8-1 miRNAs are aberrantly expressed in many human cancers, and Inohana Chuo-ku, Chiba 260-8670, japan can function either as tumor suppressors or oncogenes (12). e-mail: [email protected] Down-regulated miRNAs in cancer cells might normally function as tumor suppressive miRNAs that negatively regu- Key words: microRNA, miR-375, lactate dehydrogenase B, maxillary late oncogenes. Based on this hypothesis, we have profiled the sinus squamous cell carcinoma, tumor suppressor miRNA expression signatures of human cancers, including HNSCC (13-17). In human squamous cell carcinoma (SCC), tumor suppressive miRNAs such as miR-1, miR-133a and 186 kinoshita et al: miR-375 RegulateS LDHB in MSSCC miR-489 were identified through direct repression of several Reagent (Invitrogen) as described previously (13). Transfection oncogenes (15,16,18-20). The miRNA expression signatures of efficiency of Pre-miRTM in the IMC-3 cell line was confirmed hypopharyngeal SCC, esophageal SCC and MSSCC revealed based on down-regulation of TWF1 (PTK9) mRNA following that miR-375 is significantly reduced in cancer cells (15,16). transfection with miR-1 as previously reported (14,15). miR-375 was originally cloned and identified as an evolutionarily conserved pancreatic islet-specific miRNA (21).miR-375 -/- mice Cancer cell proliferation and invasion assays. Cells were were hyperglycemic and exhibited an increase in the number of transfected with 10 nM miRNA and siRNA by reverse trans- pancreatic α cells (22). Although several studies have indicated fection and plated in 96-well plates at 3x103 cells per well. that miR-375 is down-regulated in human cancers, the function After 72 or 96 h, cell proliferation was determined with the of miR-375 and its target genes in MSSCC remains unclear XTT assay, using the Cell Proliferation kit II (Roche Molecular (23-26). Biochemicals, Mannheim, Germany) as previously reported The aim of this study was to clarify the functional signifi- (15,16). Triplicate wells were measured for cell viability in cance of miR-375 in MSSCC and to identify molecular pathways each treatment group. regulated by miR-375. we analyzed the effect of miR-375 on cell A cell invasion assay was carried out using modified Boyden proliferation and cell invasion in the MSSCC cell line IMC-3. chambers containing transwell-precoated Matrigel membrane Genome-wide expression analysis identified lactate dehydro- filter inserts with 8-µm pores in 24-well tissue culture plates genase B (LDHB) as a candidate gene target of miR-375. The at 1x105 cells per well (BD Biosciences, Bedford, MA, USA) identification of a novel miR-375-regulated tumor suppressive (14). Triplicate wells were measured for cell invasion in each pathway could further reveal the molecular mechanism of treatment group. MSSCC oncogenesis. Microarray expression analysis. A genome-wide screen was Materials and methods performed to identify gene targets of miR-375 in the IMC-3 cell line. oligo-microarray Human 44K (Agilent Technologies) MSSCC cell culture. IMC-3, a human MSSCC cell line, was was used for expression profiling of miR-375 transfectants derived from a primary lesion of MSSCC (27). MSSCC cells in comparison with miRNA-negative-control transfectants. were grown in RPMI-1640 medium supplemented with 10% Microarray hybridization and data collection were performed fetal bovine serum in a humidified atmosphere containing 5% as previously described (28). TargetScan (release 5.1, http:// CO2 at 37˚C. www.targetscan.org/) was used to identify predicted target genes and their miRNA binding site seed regions. Sequences of Clinical specimens of MSSCC. written consent for tissue the predicted mature miRNAs were confirmed using miRBase donation for research purposes was obtained from each patient (release 17.0, http://microrna.sanger.ac.uk/). before tissue collection. The protocol was approved by the Institutional Review Board of Chiba University. Twenty pairs Quantitative reverse-transcription-PCR (qRT-PCR). First- of primary tumor tissues and corresponding normal epithelial strand cDNA was synthesized from 1.0 µg of total RNA tissues were obtained from patients with MSSCC in Chiba using a High Capacity cDNA Reverse Transcription kit University Hospital (Chiba, japan) from 2007 to 2010. The (Applied Biosystems). Gene-specific PCR products were normal tissue was confirmed to be free of cancer cells by patho- assayed con tinuously using a 7900-HT Real-Time PCR System logic examination. The specimens were immersed in RNAlater according to the manufacturer's protocol. TaqMan® probes and (Qiagen, Valencia, CA, USA) and stored at -20˚C until RNA was primers for LDHB (P/N: Hs00929956_m1), and GUSB ( P / N : extracted. Clinical information of the twenty patients is shown Hs99999908_m1) internal control were obtained from Applied in Table I. Biosystems (Assay-on-Demand Gene expression Products). The expression levels of miR-375 (Assay ID: 000564) was analyzed RNA isolation. Total RNA was isolated using TRIzol Reagent by TaqMan quantitative real-time PCR (TaqMan MicroRNA (Invitrogen, Carlsbad, CA, USA) according to the manu- Assay; Applied Biosystems) and normalized to RNU48 (Assay facturer's protocol. RNA concentration was determined ID: 001006). All reactions were performed in triplicate, and spectrophoto metrically, and molecular integrity was
Recommended publications
  • Identification of Differentially Expressed Genes in Human Bladder Cancer Through Genome-Wide Gene Expression Profiling
    521-531 24/7/06 18:28 Page 521 ONCOLOGY REPORTS 16: 521-531, 2006 521 Identification of differentially expressed genes in human bladder cancer through genome-wide gene expression profiling KAZUMORI KAWAKAMI1,3, HIDEKI ENOKIDA1, TOKUSHI TACHIWADA1, TAKENARI GOTANDA1, KENGO TSUNEYOSHI1, HIROYUKI KUBO1, KENRYU NISHIYAMA1, MASAKI TAKIGUCHI2, MASAYUKI NAKAGAWA1 and NAOHIKO SEKI3 1Department of Urology, Graduate School of Medical and Dental Sciences, Kagoshima University, 8-35-1 Sakuragaoka, Kagoshima 890-8520; Departments of 2Biochemistry and Genetics, and 3Functional Genomics, Graduate School of Medicine, Chiba University, 1-8-1 Inohana, Chuo-ku, Chiba 260-8670, Japan Received February 15, 2006; Accepted April 27, 2006 Abstract. Large-scale gene expression profiling is an effective CKS2 gene not only as a potential biomarker for diagnosing, strategy for understanding the progression of bladder cancer but also for staging human BC. This is the first report (BC). The aim of this study was to identify genes that are demonstrating that CKS2 expression is strongly correlated expressed differently in the course of BC progression and to with the progression of human BC. establish new biomarkers for BC. Specimens from 21 patients with pathologically confirmed superficial (n=10) or Introduction invasive (n=11) BC and 4 normal bladder samples were studied; samples from 14 of the 21 BC samples were subjected Bladder cancer (BC) is among the 5 most common to microarray analysis. The validity of the microarray results malignancies worldwide, and the 2nd most common tumor of was verified by real-time RT-PCR. Of the 136 up-regulated the genitourinary tract and the 2nd most common cause of genes we detected, 21 were present in all 14 BCs examined death in patients with cancer of the urinary tract (1-7).
    [Show full text]
  • A Master Autoantigen-Ome Links Alternative Splicing, Female Predilection, and COVID-19 to Autoimmune Diseases
    bioRxiv preprint doi: https://doi.org/10.1101/2021.07.30.454526; this version posted August 4, 2021. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY 4.0 International license. A Master Autoantigen-ome Links Alternative Splicing, Female Predilection, and COVID-19 to Autoimmune Diseases Julia Y. Wang1*, Michael W. Roehrl1, Victor B. Roehrl1, and Michael H. Roehrl2* 1 Curandis, New York, USA 2 Department of Pathology, Memorial Sloan Kettering Cancer Center, New York, USA * Correspondence: [email protected] or [email protected] 1 bioRxiv preprint doi: https://doi.org/10.1101/2021.07.30.454526; this version posted August 4, 2021. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY 4.0 International license. Abstract Chronic and debilitating autoimmune sequelae pose a grave concern for the post-COVID-19 pandemic era. Based on our discovery that the glycosaminoglycan dermatan sulfate (DS) displays peculiar affinity to apoptotic cells and autoantigens (autoAgs) and that DS-autoAg complexes cooperatively stimulate autoreactive B1 cell responses, we compiled a database of 751 candidate autoAgs from six human cell types. At least 657 of these have been found to be affected by SARS-CoV-2 infection based on currently available multi-omic COVID data, and at least 400 are confirmed targets of autoantibodies in a wide array of autoimmune diseases and cancer.
    [Show full text]
  • Peroxisomal Lactate Dehydrogenase Is Generated by Translational Readthrough in Mammals
    1 Peroxisomal lactate dehydrogenase is generated 2 by translational readthrough in mammals 3 4 Fabian Schueren1†, Thomas Lingner2†, Rosemol George1†, Julia Hofhuis1, 5 Corinna Dickel1, Jutta Gärtner1*, Sven Thoms1* 6 7 1Department of Pediatrics and Adolescent Medicine, University Medical Center, 8 Georg-August-University Göttingen, Germany 9 2Department of Bioinformatics, Institute for Microbiology and Genetics, 10 Georg-August-University Göttingen, Germany 11 † Co-first author 12 13 * Correpondence: [email protected] (J.G.); [email protected] 14 (S.T.) 15 16 Competing interest statement: The authors declare no competing interest. 17 18 ABSTRACT 19 Translational readthrough gives rise to low abundance proteins with C-terminal 20 extensions beyond the stop codon. To identify functional translational readthrough, we 21 estimated the readthrough propensity (RTP) of all stop codon contexts of the human 22 genome by a new regression model in silico, identified a nucleotide consensus motif for 23 high RTP by using this model, and analyzed all readthrough extensions in silico with a 24 new predictor for peroxisomal targeting signal type 1 (PTS1). Lactate dehydrogenase B 25 (LDHB) showed the highest combined RTP and PTS1 probability. Experimentally we 26 show that at least 1.6% of the total cellular LDHB getting targeted to the peroxisome by 27 a conserved hidden PTS1. The readthrough-extended lactate dehydrogenase subunit 28 LDHBx can also co-import LDHA, the other LDH subunit into peroxisomes. Peroxisomal 29 LDH is conserved in mammals and likely contributes to redox equivalent regeneration in 30 peroxisomes. 31 1 32 33 INTRODUCTION 34 Translation of genetic information encoded in mRNAs into proteins is carried out by ribosomes.
    [Show full text]
  • Lactate Dehydrogenase B Is Required for the Growth of KRAS-Dependent Lung Adenocarcinomas
    Author Manuscript Published OnlineFirst on December 6, 2012; DOI: 10.1158/1078-0432.CCR-12-2638 Author manuscripts have been peer reviewed and accepted for publication but have not yet been edited. Lactate Dehydrogenase B is required for the growth of KRAS-dependent lung adenocarcinomas Mark L. McCleland1*, Adam S. Adler1*, Laura Deming1*, Ely Cosino2, Leslie Lee2, Elizabeth M. Blackwood2, Margaret Solon1, Janet Tao1, Li Li3, David Shames4, Erica Jackson5, William F. Forrest6, and Ron Firestein1 1Department of Pathology, 2Department of Translational Oncology, 3Department of Bioinformatics & Computational Biology, 4Department of Molecular Diagnostics & Cancer Cell Biology, 5Department of Research Oncology, and 6Department of Biostatistics, Genentech, Inc., South San Francisco, California, USA * These authors contributed equally to this work Corresponding Author: Ron Firestein, Genentech, Inc., 1 DNA Way, South San Francisco, CA 94080; Phone: 650-225-8441; Fax: 650-467-2625; E-mail: [email protected] Running title: LDHB is a regulator of KRAS-dependent lung cancer Key words: LDHB, KRAS, lung cancer, glycolysis, metabolism Conflict of interest: All authors are employed by Genentech, Inc. Number of figures: 6 Downloaded from clincancerres.aacrjournals.org on September 25, 2021. © 2012 American Association for Cancer Research. Author Manuscript Published OnlineFirst on December 6, 2012; DOI: 10.1158/1078-0432.CCR-12-2638 Author manuscripts have been peer reviewed and accepted for publication but have not yet been edited. Translational Relevance Specific molecular subsets of cancer have proven to be difficult to target, leaving patients with few therapeutic options. One such example of this is lung adenocarcinomas that exhibit aberration in the KRAS oncogene. KRAS is altered, through activating mutation and copy number gain, in nearly 30% of lung adenocarcinomas.
    [Show full text]
  • Lactate Dehydrogenase Deficiency
    Lactate dehydrogenase deficiency Description Lactate dehydrogenase deficiency is a condition that affects how the body breaks down sugar to use as energy in cells, primarily muscle cells. There are two types of this condition: lactate dehydrogenase-A deficiency (sometimes called glycogen storage disease XI) and lactate dehydrogenase-B deficiency. People with lactate dehydrogenase-A deficiency experience fatigue, muscle pain, and cramps during exercise (exercise intolerance). In some people with lactate dehydrogenase-A deficiency, high-intensity exercise or other strenuous activity leads to the breakdown of muscle tissue (rhabdomyolysis). The destruction of muscle tissue releases a protein called myoglobin, which is processed by the kidneys and released in the urine (myoglobinuria). Myoglobin causes the urine to be red or brown. This protein can also damage the kidneys, in some cases leading to life-threatening kidney failure. Some people with lactate dehydrogenase-A deficiency develop skin rashes. The severity of the signs and symptoms among individuals with lactate dehydrogenase-A deficiency varies greatly. People with lactate dehydrogenase-B deficiency typically do not have any signs or symptoms of the condition. They do not have difficulty with physical activity or any specific physical features related to the condition. Affected individuals are usually discovered only when routine blood tests reveal reduced lactate dehydrogenase activity. Frequency Lactate dehydrogenase deficiency is a rare disorder. In Japan, this condition affects 1 in 1 million individuals; the prevalence of lactate dehydrogenase deficiency in other countries is unknown. Causes Mutations in the LDHA gene cause lactate dehydrogenase-A deficiency, and mutations in the LDHB gene cause lactate dehydrogenase-B deficiency.
    [Show full text]
  • Suppressed Expression of LDHB Promotes Age-Related Hearing Loss
    Tian et al. Cell Death and Disease (2020) 11:375 https://doi.org/10.1038/s41419-020-2577-y Cell Death & Disease ARTICLE Open Access Suppressed expression of LDHB promotes age- related hearing loss via aerobic glycolysis Chunjie Tian1,YeonJuKim2,SaiHali3, Oak-Sung Choo2,4,Jin-SolLee2,5,Seo-KyungJung2,5, Youn-Uk Choi6, Chan Bae Park6 and Yun-Hoon Choung 2,4,5 Abstract Age-dependent decrease of mitochondrial energy production and cellular redox imbalance play significant roles in age-related hearing loss (ARHL). Lactate dehydrogenase B (LDHB) is a key glycolytic enzyme that catalyzes the interconversion of pyruvate and lactate. LDH activity and isoenzyme patterns are known to be changed with aging, but the role of LDHB in ARHL has not been studied yet. Here, we found that LDHB knockout mice showed hearing loss at high frequencies, which is the typical feature of ARHL. LDHB knockdown caused downregulation of mitochondrial functions in auditory cell line, University of Bristol/organ of Corti 1 (UB/OC1) with decreased NAD+ and increased hypoxia inducing factor-1α. LDHB knockdown also enhanced the death of UB/OC1 cells with ototoxic gentamicin treatment. On the contrary, the induction of LDHB expression caused enhanced mitochondrial functions, including changes in mitochondrial respiratory subunits, mitochondrial membrane potentials, ATP, and the NAD+/NADH ratio. Thus, we concluded that suppression of LDHB activity may be closely related with the early onset or progression of ARHL. 1234567890():,; 1234567890():,; 1234567890():,; 1234567890():,; Introduction as hereditary susceptibility, autophagic stress, inflamma- Age-related hearing loss (ARHL) that occurs in tion, and oxidative stress5. response to aging is a universal disorder in modern Decreased mitochondrial function with age has been society.
    [Show full text]
  • Effects of Lactate Dehydrogenase Haplotypes and Body Condition on Beef Cow Production Olfat Taleb Alaamri University of Arkansas, Fayetteville
    View metadata, citation and similar papers at core.ac.uk brought to you by CORE provided by ScholarWorks@UARK University of Arkansas, Fayetteville ScholarWorks@UARK Theses and Dissertations 8-2011 Effects of Lactate Dehydrogenase Haplotypes and Body Condition on Beef Cow Production Olfat Taleb Alaamri University of Arkansas, Fayetteville Follow this and additional works at: http://scholarworks.uark.edu/etd Part of the Cell Biology Commons, and the Meat Science Commons Recommended Citation Alaamri, Olfat Taleb, "Effects of Lactate Dehydrogenase Haplotypes and Body Condition on Beef Cow Production" (2011). Theses and Dissertations. 130. http://scholarworks.uark.edu/etd/130 This Thesis is brought to you for free and open access by ScholarWorks@UARK. It has been accepted for inclusion in Theses and Dissertations by an authorized administrator of ScholarWorks@UARK. For more information, please contact [email protected]. EFFECTS OF LACTATE DEHYDROGENASE HAPLOTYPES AND BODY CONDITION ON BEEF COW PRODUCTION EFFECTS OF LACTATE DEHYDROGENASE HAPLOTYPES AND BODY CONDITION ON BEEF COW PRODUCTION A thesis submitted in partial fulfillment of the requirements for the degree of Master of Science in Cell and Molecular Biology By Olfat Taleb Alaamri King Abdulaziz University Bachelor of Science in Biochemistry, 2002 August 2011 University of Arkansas ABSTRACT Lactate dehydrogenase (LDH) catalyzes the conversion of the pyruvate to lactate (forward) or lactate to pyruvate (reverse) in the last step of glycolysis. Objectives were to document the effects of LDH haplotypes and its SNPs, found in the promoter and coding sequence site, and body condition on beef cow production. Four single nucleotide polymorphisms (SNP) of LDH-B and Five single nucleotide polymorphisms of LDH-A were detected.
    [Show full text]
  • Supplementary Table 1
    Human BALF Proteome IPI Entrez Gene ID Gene Symbol Gene Name IPI00644018 1 A1BG ALPHA-1-B GLYCOPROTEIN IPI00465313 2 A2M ALPHA-2-MACROGLOBULIN IPI00021428 58 ACTA1 ACTIN, ALPHA 1, SKELETAL MUSCLE IPI00008603 59 ACTA2 ACTIN, ALPHA 2, SMOOTH MUSCLE, AORTA IPI00021439 60 ACTB ACTIN, BETA IPI00022434 213 ALB ALBUMIN IPI00218914 216 ALDH1A1 ALDEHYDE DEHYDROGENASE 1 FAMILY, MEMBER A1 IPI00465439 226 ALDOA ALDOLASE A, FRUCTOSE-BISPHOSPHATE IPI00022426 259 AMBP ALPHA-1-MICROGLOBULIN/BIKUNIN PRECURSOR IPI00646265 276 AMY1C AMYLASE, ALPHA 1C; SALIVARY IPI00021447 280 AMY2B AMYLASE, ALPHA 2B; PANCREATIC IPI00334627 304 ANXA2P2 ANNEXIN A2 PSEUDOGENE 2 IPI00021841 335 APOA1 APOLIPOPROTEIN A-I IPI00298828 350 APOH APOLIPOPROTEIN H (BETA-2-GLYCOPROTEIN I) IPI00045508 64651 AXUD1 AXIN1 UP-REGULATED 1 IPI00166729 563 AZGP1 ALPHA-2-GLYCOPROTEIN 1, ZINC IPI00004656 567 B2M BETA-2-MICROGLOBULIN IPI00291410 92747 C20ORF114 CHROMOSOME 20 OPEN READING FRAME 114 IPI00025699 128653 C20ORF141 CHROMOSOME 20 OPEN READING FRAME 141 IPI00164623 718 C3 COMPLEMENT COMPONENT 3 IPI00032258 720 C4A COMPLEMENT COMPONENT 4A (RODGERS BLOOD GROUP) IPI00103067 828 CAPS CALCYPHOSINE IPI00012011 1072 CFL1 COFILIN 1 (NON-MUSCLE) IPI00291262 1191 CLU CLUSTERIN IPI00305477 1469 CST1 CYSTATIN SN IPI00479050 1576 CYP3A4 CYTOCHROME P450, SUBFAMILY IIIA (NIPHEDIPINE OXIDASE), POLYPEPTIDE 3 IPI00164895 1551 CYP3A7 CYTOCHROME P450, FAMILY 3, SUBFAMILY A, POLYPEPTIDE 7 IPI00736860 2003 ELK2P1 ELK2, MEMBER OF ETS ONCOGENE FAMILY, PSEUDOGENE 1 IPI00479359 7430 EZR EZRIN IPI00382606 2155
    [Show full text]
  • Stable Shrna Silencing of Lactate Dehydrogenase a (LDHA)
    ANTICANCER RESEARCH 37 : 1205-1212 (2017) doi:10.21873/anticanres.11435 Stable shRNA Silencing of Lactate Dehydrogenase A (LDHA) in Human MDA-MB-231 Breast Cancer Cells Fails to Alter Lactic Acid Production, Glycolytic Activity, ATP or Survival NZINGA MACK, ELIZABETH A. MAZZIO, DAVID BAUER, HERNAN FLORES-ROZAS and KARAM F.A. SOLIMAN College of Pharmacy and Pharmaceutical Sciences, Florida A&M University, Tallahassee, FL, U.S.A. Abstract. Background: In the US, African Americans have a absence of impact on any observed parameter by LDH-A KD high death rate from triple-negative breast cancer (TNBC), and this being somewhat contrary to findings in the literature, characterized by lack of hormone receptors (ER, PR, further analysis was required to determine why. Whole- HER2/ERRB2) which are otherwise valuable targets of transcriptome analytic profile on MDA-MB-231 for LDH chemotherapy. There is a need to identify novel targets that subtypes using Agilent Human Genome 4 ×44k microarrays, negatively impact TNBC tumorigenesis. TNBCs release an where the data show the following component breakdown. abundance of lactic acid, under normoxic, hypoxic and Transcripts: 30.47 % LDHA, 69.36% LDHB, 0.12% LDHC and hyperoxic conditions; this referred to as the Warburg effect. 0.05% LDHD. Conclusion: These findings underscore the Accumulated lactic acid sustains peri-cellular acidity which importance of alternative isoforms of LDH in cancer cells to propels metastatic invasion and malignant aggressive produce lactic acid, when LDHA is silenced or inhibited. LDHA transformation. The source of lactic acid is believed to be via silencing alone is not effective in hampering or inducing conversion of pyruvate by lactate dehydrogenase (LDH) in the changes in survival, metabolism or lactic acid produced in a last step of glycolysis, with most studies focusing on the LDHA cell line with high concentrations of LDHB.
    [Show full text]
  • Proteogenomic Single Cell Analysis of Skeletal Muscle Myocytes
    bioRxiv preprint doi: https://doi.org/10.1101/2020.01.23.916791; this version posted January 28, 2020. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC 4.0 International license. 1 Proteogenomic single cell analysis of skeletal muscle myocytes 2 3 Katherine M. Fomchenko1,4, Rohan X. Verma1,4, Suraj Kannan2, Brian L. Lin2, Xiaoping Yang1, 4 Tim O. Nieuwenhuis1, Arun H. Patil1, Karen Fox-Talbot1, Matthew N. McCall3, Chulan Kwon2, 5 David A. Kass2, Avi Z. Rosenberg1, Marc K. Halushka1* 6 7 1 Department of Pathology, Johns Hopkins University School of Medicine, Baltimore, MD, USA 8 2 Division of Cardiology, Department of Medicine, Johns Hopkins University School of 9 Medicine, Baltimore, MD, USA 10 3 Department of Biostatistics and Computational Biology, University of Rochester Medical 11 Center, Rochester, NY, USA 12 4 These authors contributed equally to this project 13 14 Email Addresses: 15 [email protected] 16 [email protected] 17 [email protected] 18 [email protected] 19 [email protected] 20 [email protected] 21 [email protected] 22 [email protected] 23 [email protected] 24 [email protected] 25 [email protected] 26 [email protected] 27 [email protected] 28 29 * Correspondence and address for reprints to: 30 Marc K. Halushka, M.D., Ph.D. 31 Johns Hopkins University School of Medicine 32 Ross Bldg. Rm 632B 33 720 Rutland Avenue 34 Baltimore, MD 21205 35 410-614-8138 (ph) 36 410-502-5862 (fax) 37 [email protected] 38 bioRxiv preprint doi: https://doi.org/10.1101/2020.01.23.916791; this version posted January 28, 2020.
    [Show full text]
  • Changes in Lactate Production, Lactate Dehydrogenase Genes Expression and DNA Methylation in Response to Tamoxifen Resistance Development in MCF-7 Cell Line
    G C A T T A C G G C A T genes Article Changes in Lactate Production, Lactate Dehydrogenase Genes Expression and DNA Methylation in Response to Tamoxifen Resistance Development in MCF-7 Cell Line Lama Hamadneh 1,* , Lara Al-Lakkis 1, Ala A. Alhusban 1, Shahd Tarawneh 2, Bashaer Abu-Irmaileh 3, Sokiyna Albustanji 1 and Abdel Qader Al-Bawab 1 1 Faculty of Pharmacy, Al-Zaytoonah University of Jordan, Amman 11733, Jordan; [email protected] (L.A.-L.); [email protected] (A.A.A.); [email protected] (S.A.); [email protected] (A.Q.A.-B.) 2 Faculty of Science, Mutah University, Karak 61710, Jordan; [email protected] 3 Hamdi Mango Center for Scientific Research, The University of Jordan, Amman 11942, Jordan; [email protected] * Correspondence: [email protected]; Tel.: +96-277-777-1900 Abstract: Lactate dehydrogenase (LDH) is a key enzyme in the last step of glycolysis, playing a role in the pyruvate-to-lactate reaction. It is associated with the prognosis and metastasis of many cancers, including breast cancer. In this study, we investigated the changes in LDH gene expression and lactate concentrations in the culture media during tamoxifen resistance development in the MCF-7 Citation: Hamadneh, L.; Al-Lakkis, L.; Alhusban, A.A.; Tarawneh, S.; cell line, and examined LDHB promoter methylation levels. An upregulation of 2.9 times of LDHB Abu-Irmaileh, B.; Albustanji, S.; gene expression was observed around the IC50 concentration of tamoxifen in treated cells, while Al-Bawab, A.Q. Changes in Lactate fluctuation in LDHA gene expression levels was found.
    [Show full text]
  • Introductory Remarks on the Milieux of the Egg and the Early Embryo
    REPRODUCTIONREVIEW Use of proteomics to identify highly abundant maternal factors that drive the egg-to-embryo transition Piraye Yurttas, Eric Morency1 and Scott A Coonrod1 Weill Graduate School of Medical Sciences, Cornell University, 1300 York Avenue, New York, New York 10065, USA and 1College of Veterinary Medicine, Baker Institute for Animal Health, Cornell University, Hungerford Hill Road, Ithaca, New York 14853, USA Correspondence should be addressed to S A Coonrod; Email: [email protected] P Yurttas and E Morency contributed equally to this work P Yurttas is now at Celmatix, Inc., 7 Hubert Street, New York, New York 10013, USA Abstract As IVF becomes an increasingly popular method for human reproduction, it is more critical than ever to understand the unique molecular composition of the mammalian oocyte. DNA microarray studies have successfully provided valuable information regarding the identity and dynamics of factors at the transcriptional level. However, the oocyte transcribes and stores a large amount of material that plays no obvious role in oogenesis, but instead is required to regulate embryogenesis. Therefore, an accurate picture of the functional state of the oocyte requires both transcriptional profiling and proteomics. Here, we summarize our previous studies of the oocyte proteome, and present new panels of oocyte proteins that we recently identified in screens of metaphase II-arrested mouse oocytes. Importantly, our studies indicate that several abundant oocyte proteins are not, as one might predict, ubiquitous housekeeping proteins, but instead are unique to the oocyte. Furthermore, mouse studies indicate that a number of these factors arise from maternal effect genes (MEGs). One of the identified MEG proteins, peptidylarginine deiminase 6, localizes to and is required for the formation of a poorly characterized, highly abundant cytoplasmic structure: the oocyte cytoplasmic lattices.
    [Show full text]