Effect of Phosphorus on the Toxicity of Zinc to the Microalga Raphidocelis WANG NX, LI Y, DENG XH, MIAO AJ, JI R & YANG LY
Total Page:16
File Type:pdf, Size:1020Kb
Load more
Recommended publications
-
Lateral Gene Transfer of Anion-Conducting Channelrhodopsins Between Green Algae and Giant Viruses
bioRxiv preprint doi: https://doi.org/10.1101/2020.04.15.042127; this version posted April 23, 2020. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC-ND 4.0 International license. 1 5 Lateral gene transfer of anion-conducting channelrhodopsins between green algae and giant viruses Andrey Rozenberg 1,5, Johannes Oppermann 2,5, Jonas Wietek 2,3, Rodrigo Gaston Fernandez Lahore 2, Ruth-Anne Sandaa 4, Gunnar Bratbak 4, Peter Hegemann 2,6, and Oded 10 Béjà 1,6 1Faculty of Biology, Technion - Israel Institute of Technology, Haifa 32000, Israel. 2Institute for Biology, Experimental Biophysics, Humboldt-Universität zu Berlin, Invalidenstraße 42, Berlin 10115, Germany. 3Present address: Department of Neurobiology, Weizmann 15 Institute of Science, Rehovot 7610001, Israel. 4Department of Biological Sciences, University of Bergen, N-5020 Bergen, Norway. 5These authors contributed equally: Andrey Rozenberg, Johannes Oppermann. 6These authors jointly supervised this work: Peter Hegemann, Oded Béjà. e-mail: [email protected] ; [email protected] 20 ABSTRACT Channelrhodopsins (ChRs) are algal light-gated ion channels widely used as optogenetic tools for manipulating neuronal activity 1,2. Four ChR families are currently known. Green algal 3–5 and cryptophyte 6 cation-conducting ChRs (CCRs), cryptophyte anion-conducting ChRs (ACRs) 7, and the MerMAID ChRs 8. Here we 25 report the discovery of a new family of phylogenetically distinct ChRs encoded by marine giant viruses and acquired from their unicellular green algal prasinophyte hosts. -
The Draft Genome of the Small, Spineless Green Alga
Protist, Vol. 170, 125697, December 2019 http://www.elsevier.de/protis Published online date 25 October 2019 ORIGINAL PAPER Protist Genome Reports The Draft Genome of the Small, Spineless Green Alga Desmodesmus costato-granulatus (Sphaeropleales, Chlorophyta) a,b,2 a,c,2 d,e f g Sibo Wang , Linzhou Li , Yan Xu , Barbara Melkonian , Maike Lorenz , g b a,e f,1 Thomas Friedl , Morten Petersen , Sunil Kumar Sahu , Michael Melkonian , and a,b,1 Huan Liu a BGI-Shenzhen, Beishan Industrial Zone, Yantian District, Shenzhen 518083, China b Department of Biology, University of Copenhagen, Copenhagen, Denmark c Department of Biotechnology and Biomedicine, Technical University of Denmark, Copenhagen, Denmark d BGI Education Center, University of Chinese Academy of Sciences, Beijing, China e State Key Laboratory of Agricultural Genomics, BGI-Shenzhen, Shenzhen 518083, China f University of Duisburg-Essen, Campus Essen, Faculty of Biology, Universitätsstr. 2, 45141 Essen, Germany g Department ‘Experimentelle Phykologie und Sammlung von Algenkulturen’, University of Göttingen, Nikolausberger Weg 18, 37073 Göttingen, Germany Submitted October 9, 2019; Accepted October 21, 2019 Desmodesmus costato-granulatus (Skuja) Hegewald 2000 (Sphaeropleales, Chlorophyta) is a small, spineless green alga that is abundant in the freshwater phytoplankton of oligo- to eutrophic waters worldwide. It has a high lipid content and is considered for sustainable production of diverse compounds, including biofuels. Here, we report the draft whole-genome shotgun sequencing of D. costato-granulatus strain SAG 18.81. The final assembly comprises 48,879,637 bp with over 4,141 scaffolds. This whole-genome project is publicly available in the CNSA (https://db.cngb.org/cnsa/) of CNGBdb under the accession number CNP0000701. -
First Identification of the Chlorophyte Algae Pseudokirchneriella Subcapitata (Korshikov) Hindák in Lake Waters of India
Nature Environment and Pollution Technology p-ISSN: 0972-6268 Vol. 19 No. 1 pp. 409-412 2020 An International Quarterly Scientific Journal e-ISSN: 2395-3454 Original Research Paper Open Access First Identification of the Chlorophyte Algae Pseudokirchneriella subcapitata (Korshikov) Hindák in Lake Waters of India Vidya Padmakumar and N. C. Tharavathy Department of Studies and Research in Biosciences, Mangalore University, Mangalagangotri, Mangaluru-574199, Dakshina Kannada, Karnataka, India ABSTRACT Nat. Env. & Poll. Tech. Website: www.neptjournal.com The species Pseudokirchneriella subcapitata is a freshwater microalga belonging to Chlorophyceae. It is one of the best-known bio indicators in eco-toxicological research. It has been increasingly Received: 13-06-2019 prevalent in many fresh water bodies worldwide. They have been since times used in many landmark Accepted: 23-07-2019 toxicological analyses due to their ubiquitous nature and acute sensitivity to substances. During a survey Key Words: of chlorophytes in effluent impacted lakes of Attibele region of Southern Bangalore,Pseudokirchneriella Bioindicator subcapitata was identified from the samples collected from the Giddenahalli Lake as well as Zuzuvadi Ecotoxicology Lake. This is the first identification of this species in India. Analysis based on micromorphology confirmed Lakes of India the status of the organism to be Pseudokirchneriella subcapitata. Pseudokirchneriella subcapitata INTRODUCTION Classification: Pseudokirchneriella subcapitata was previously called as Empire: Eukaryota Selenastrum capricornatum (NIVA-CHL 1 strain). But Kingdom: Plantae according to Nygaard & Komarek et al. (1986, 1987), Subkingdom: Viridiplantae this alga does not belong to the genus Selenastrum instead to Raphidocelis (Hindak 1977) and was renamed Infrakingdom: Chlorophyta Raphidocelis subcapitata (Korshikov 1953). Hindak Phylum: Chlorophyta in 1988 made the name Kirchneriella subcapitata Subphylum: Chlorophytina Korshikov, and it was his type species of his new Genus Class: Chlorophyceae Kirchneria. -
A Comparative Test on the Sensitivity of Freshwater and Marine Microalgae to Benzo-Sulfonamides, -Thiazoles and -Triazoles
applied sciences Article A Comparative Test on the Sensitivity of Freshwater and Marine Microalgae to Benzo-Sulfonamides, -Thiazoles and -Triazoles Luca Canova 1, Michela Sturini 1 , Federica Maraschi 1 , Stefano Sangiorgi 2 and Elida Nora Ferri 2,* 1 Department of Chemistry, University of Pavia, Via Taramelli 12, 27100 Pavia, Italy; [email protected] (L.C.); [email protected] (M.S.); [email protected] (F.M.) 2 Department of Pharmacy and Biotechnology, University of Bologna, Via S. Donato 15, 40127 Bologna, Italy; [email protected] * Correspondence: [email protected] Featured Application: These preliminary data on the differences among aquatic microoorgan- isms in their response to benzo-fused nitrogen heterocyclic pollutants can help in selecting the most suitable biotest for environmental toxicity monitoring activities. Abstract: The evaluation of the ecotoxicological effects of water pollutants is performed by using different aquatic organisms. The effects of seven compounds belonging to a class of widespread contaminants, the benzo-fused nitrogen heterocycles, on a group of simple organisms employed in reference ISO tests on water quality (unicellular algae and luminescent bacteria) have been assessed to ascertain their suitability in revealing different contamination levels in the water, wastewater, and sediments samples. Representative compounds of benzotriazoles, benzothiazoles, and ben- zenesulfonamides, were tested at a concentration ranging from 0.01 to 100 mg L−1. In particular, Citation: Canova, L.; Sturini, M.; our work was focused on the long-term effects, for which little information is up to now available. Maraschi, F.; Sangiorgi, S.; Ferri, E.N. Species-specific sensitivity for any whole family of pollutants was not observed. -
AVALIAÇÃO DA SENSIBILIDADE DE Raphidocelis Subcapitata (CHLOROCOCCALES, CHLOROPHYTA) AO SULFATO DE COBRE E SULFATO DE ZINCO ATRAVÉS DE ENSAIOS DE TOXICIDADE CRÔNICA1
ECOLOGIA AVALIAÇÃO DA SENSIBILIDADE DE Raphidocelis subcapitata (CHLOROCOCCALES, CHLOROPHYTA) AO SULFATO DE COBRE E SULFATO DE ZINCO ATRAVÉS DE ENSAIOS DE TOXICIDADE CRÔNICA1 Lúcia Helena Ribeiro Rodrigues2 Alexandre Arenzon2 Maria Teresa Raya-Rodriguez2 Nelson Ferreira Fontoura3 RESUMO Ensaios de toxicidade crônica, analisando a inibição de crescimento algáceo após 96 horas, foram realizados a fim de conhecer a sensibilidade de Raphidocelis subcapitata (conhecida como Selenastrum capricornutum), ao sulfato de cobre (CuSO4.5H2O) e sulfato de zinco (ZnSO4.7H2O). A inibição do crescimento algáceo seguiu uma tendência exponencial negativa em função do aumento de concentra- -5,581.C(Cu) ção das duas substâncias, sendo descrita através das seguintes equações: N96 = Ni.e ; -5,452.C(Zn) N96 = Ni.e ; onde Ni é o número inicial de células da cultura e N96 é o número de células de R. subcapitata após 96 horas de exposição a diferentes concentrações de sulfato de cobre (C(Cu)) e sulfato de zinco (C(Zn)) respectivamente. Valores de CE(I)50;96h mostraram maior sensibilidade de R. subcapitata ao sulfato de cobre (0,154 mg.L-1) quando comparada com sulfato de zinco (0,215 mg.L-1). A faixa de sensibilidade de R. subcapitata para o sulfato de cobre situou-se no intervalo de 0,099 a 0,209 mg.L-1 e a faixa de sensibilidade de R. subcapitata para o sulfato de zinco foi estimada no interva- lo de 0,163 a 0,267 mg.L-1. Palavras-chave: Raphidocelis subcapitata, Selenastrum capricornutum, sulfato de cobre, sulfato de zinco. ABSTRACT Sensitivity of Raphidocelis subcapitata (Chlorococcales, Chlorophyta) to copper sulfate and zinc sulfate through chonic toxicity tests Chronic toxicity tests, analyzing algal growth inhibition after 96 hours, were made to measure the sensitivity of Raphidocelis subcapitata (formerly known as Selenastrum capricornutum) to copper sulfate (CuSO4.5H2O) and zinc sulfate (ZnSO4.7H2O). -
Genomic Adaptations to an Endolithic Lifestyle in the Coral-Associated Alga
bioRxiv preprint doi: https://doi.org/10.1101/2020.07.21.211367; this version posted November 26, 2020. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC-ND 4.0 International license. 1 Genomic adaptations to an endolithic lifestyle in 2 the coral-associated alga Ostreobium 3 4 Cintia Iha1,*, Katherine E. Dougan2, Javier A. Varela3, Viridiana Avila4, Christopher J. Jackson1, 5 Kenny A. Bogaert5, Yibi Chen2, Louise M. Judd6, Ryan Wick6, Kathryn E. Holt6,7, Marisa M. 6 Pasella1, Francesco Ricci1, Sonja I. Repetti1, Mónica Medina4, Vanessa R. Marcelino8, Cheong 7 Xin Chan2, Heroen Verbruggen1,9 8 9 1School of BioSciences, University of Melbourne, Victoria 3010, Australia 10 2School of Chemistry and Molecular Biosciences and Australian Centre for Ecogenomics, The 11 University of Queensland, Brisbane, Queensland 4072, Australia 12 3School of Microbiology/Centre for Synthetic Biology and Biotechnology/Environmental 13 Research Institute/APC Microbiome Institute, University College Cork, Cork T12 YN60, 14 Ireland 15 4Pennsylvania State University, University Park, PA, 16802, USA 16 5Phycology Research Group, Ghent University, Krijgslaan 281 S8, 9000 Gent, Belgium 17 6Department of Infectious Diseases, Central Clinical School, Monash University, Melbourne, 18 3004, Australia 19 7London School of Hygiene & Tropical Medicine, London, WC1E 7HT, UK 20 8Centre for Innate Immunity and Infectious Diseases, Hudson Institute of Medical Research, 21 Clayton 3168, Victoria, Australia 22 9Lead Contact: [email protected] 23 24 *Correspondence: [email protected] 25 26 1 bioRxiv preprint doi: https://doi.org/10.1101/2020.07.21.211367; this version posted November 26, 2020. -
Long-Term Acclimation of Pseudokirchneriella Subcapitata (Korshikov) Hindak to Different Copper Concentrations: Changes in Tolerance and Physiology
Aquatic Toxicology 68 (2004) 61–74 Long-term acclimation of Pseudokirchneriella subcapitata (Korshikov) Hindak to different copper concentrations: changes in tolerance and physiology Bart T.A. Bossuyt∗, Colin R. Janssen Laboratory of Environmental Toxicology and Aquatic Ecology, Ghent University, J. Plateaustraat 22, B-9000 Ghent, Belgium Received 12 December 2003; received in revised form 6 January 2004; accepted 12 February 2004 Abstract The effect of long-term copper acclimation of the freshwater green algae Pseudokirchneriella subcapitata to copper was investigated using different physiological and toxicological endpoints. The algae were exposed to seven—five of which are ecologically relevant for European surface waters—copper concentration ranging from 0.5 to 100 gCul−1 during a 3-month period. A standard medium was used as culture and test medium with an addition of 2 mg DOC l−1 (replacing EDTA). At certain intervals, experiments were performed to assess algal biomass, growth rate, chlorophyll and carotenoid content, pigment diversity, autotrophic index, intracellular and adsorbed copper, and the sensitivity of the algae to copper. Chronic copper tolerance (mean ± standard deviation) increased significantly from 88±15 to 124±25 gCul−1 for P.subcapitata acclimated to 0.5 and 100 g Cu l−1, respectively. Based on the algal biomass, the growth rate, the pigment diversity and the autotrophic index, an optimal concentration range was observed between 1 and 35 gCul−1. Significant decreases in algal biomass, pigment diversity and autotrophic index were observed in algal cultures acclimated to 0.5 gCul−1 and 100 gCul−1. Chlorophyll a content (mean ± standard deviation) increased from 8.4 ± 3.1to28.6 ± 7.5 × 10−14 g per cell and carotenoid content (mean ± standard deviation) increased from 3.7±0.8to7.1±1.2×10−14 g per cell for algae exposed to 1 and 100 gCul−1, respectively. -
Aquatic Toxicology 101 (2011) 459–465
Aquatic Toxicology 101 (2011) 459–465 Contents lists available at ScienceDirect Aquatic Toxicology journal homepage: www.elsevier.com/locate/aquatox Effects of a complex mixture of therapeutic drugs on unicellular algae Pseudokirchneriella subcapitata Candida Vannini a, Guido Domingo a, Milena Marsoni a,∗, Fabrizio De Mattia b, Massimo Labra b, Sara Castiglioni c, Marcella Bracale a a Department of Environment-Health-Safety, University of Insubria, Via G.B. Vico 46, I-21100 Varese, Italy b Department of Biotechnology and Biosciences, University of Milano-Bicocca, Piazza della Scienza 2, I-20126 Milan, Italy c Department of Environmental Health Sciences, Mario Negri Institute for Pharmacological Research, Via La Masa 19, I-20156 Milan, Italy article info abstract Article history: Pharmaceutically-active compounds are regularly and widely released into the aquatic environment in Received 21 June 2010 an unaltered form or as metabolites. So far, little is known about their potential detrimental effects on Received in revised form algae populations which can ultimately impact nutrient cycling and oxygen balance. For our analysis, 20 September 2010 the common microalga Pseudokirchneriella subcapitata (P. subcapitata) was exposed to a mixture of 13 Accepted 31 October 2010 drugs found in Italian wastewaters and rivers. Traces of pharmaceuticals investigated were detected in treated algal cells, except for cyclophosphamide and ranitidine, indicating that these algae are able to Keywords: absorb pharmaceutical pollutants from the environment. The effects of the treatment were investigated Pharmaceutical pollution Pseudokirchneriella subcapitata by Amplified Fragment Length Polymorphism (AFLP) assessment of DNA damage and 2-DE proteomic AFLP analysis. While no genotoxic effect was detected, proteomic analysis showed that algae are sensitive to 2-DE the presence of drugs and that, in particular, the chloroplast is affected. -
Innovation System Analysis and Design
Instituto Tecnológico y de Estudios Superiores de Monterrey Campus Monterrey School of Engineering and Sciences Differential Transcriptome and Lipidome Analysis of the Microalga Desmodesmus abundans Under a Continuous Flow of Model Cement Flue Gas in a Photobioreactor A thesis presented by Shirley María Mora Godínez Submitted to the School of Engineering and Sciences in partial fulfillment of the requirements for the degree of Master of Science In Biotechnology Monterrey Nuevo León, December 14th, 2018 Dedication To God, my family and friends, who have been my support during this process Acknowledgements I would like to express my deepest gratitude first to God, for helping me to continue in adversity and for the infinite blessings. To my family, for always supporting me, for being the engine that pushes me to keep going. To Dr. Adriana Pacheco, for her valuable support, guidance and time insight throughout this project, for being more than just an assessor and giving me her help whenever I needed it and in everything she could. Thank you to the student Isis Castrejon for her infinite dedication, support, valuable time and friendship, her role in this project was remarkable, always giving the best of herself. Thank you to my committee members for their collaboration in reviewing this work, to Dr. Carolina Senés and Dr. Carlos Rodríguez for their support and for answering my doubts during the development of the project. To Dr. Victor Treviño and Dr. Rocío Díaz for their valuable contributions. I also thank you to Dr. Perla, Lic. Regina, Dr. Cristina Chuck and the student Maru Reyna for their collaboration. -
Ecotoxicity Assessment in Aquaculture System Using the Test Organism Pseudokirchneriella Subcapitata (Chlorophyceae)
Acta Scientiarum http://www.uem.br/acta ISSN printed: 1679-9283 ISSN on-line: 1807-863X Doi: 10.4025/actascibiolsci.v34i4.9391 Ecotoxicity assessment in aquaculture system using the test organism Pseudokirchneriella subcapitata (Chlorophyceae) * Luciana Miashiro , Julio Vicente Lombardi and Cacilda Thais Janson Mercante Instituto de Pesca, Rod. Washington Luis, km 445, Cx. Postal 1052, 15025-970, São José do Rio Preto, São Paulo, Brazil. *Author for correspondence. E-mail: [email protected] ABSTRACT. The purpose of this study is to perform toxicity tests with microalgae Pseudokirchneriella subcapitata (Chlorophyceae) using inland water samples to evaluate the impact caused by aquaculture. Six field samples were collected ranged November 2006 to March 2007, at Experimental Station, Pindamonhangaba, State of São Paulo. Abiotic factors pointed out to the mesotrophic and eutrophic characteristics already observed at the fish pond and its effluent. The results of ecotoxicological tests carried out with the microalgae Pseudokirchneriella subcapitata showed that the fish pond effluent was potential enough to stimulate the algal growth, therefore eutrophication, to the extent that it is naturally diluted to at least 12.5% of its initial concentration. This type of test can be a tool to be used by environmental managers in attempts to measure the extents of the impacts of effluent discharges from fish farming and to propose treatments based on qualitative and quantitative information. Keywords: Nile tilapia, effluent, eutrophication, microalgae. Avaliação da ecotoxicidade em sistema de aquicultura utilizando o organismo-teste Pseudokirchneriella subcapitata (Chlorophyceae) RESUMO. O objetivo deste trabalho foi realizar testes ecotoxicológicos com a microalga Pseudokirchneriella subcapitata (Chlorophyceae) em amostras de água de piscicultura continental, para avaliar impactos gerados pela atividade. -
Provides an Insight Into Genome Evolution And
www.nature.com/scientificreports OPEN Raphidocelis subcapitata (=Pseudokirchneriella subcapitata) provides an insight into genome Received: 18 November 2017 Accepted: 8 May 2018 evolution and environmental Published: xx xx xxxx adaptations in the Sphaeropleales Shigekatsu Suzuki, Haruyo Yamaguchi , Nobuyoshi Nakajima & Masanobu Kawachi The Sphaeropleales are a dominant group of green algae, which contain species important to freshwater ecosystems and those that have potential applied usages. In particular, Raphidocelis subcapitata is widely used worldwide for bioassays in toxicological risk assessments. However, there are few comparative genome analyses of the Sphaeropleales. To reveal genome evolution in the Sphaeropleales based on well-resolved phylogenetic relationships, nuclear, mitochondrial, and plastid genomes were sequenced in this study. The plastid genome provides insights into the phylogenetic relationships of R. subcapitata, which is located in the most basal lineage of the four species in the family Selenastraceae. The mitochondrial genome shows dynamic evolutionary histories with intron expansion in the Selenastraceae. The 51.2 Mbp nuclear genome of R. subcapitata, encoding 13,383 protein-coding genes, is more compact than the genome of its closely related oil- rich species, Monoraphidium neglectum (Selenastraceae), Tetradesmus obliquus (Scenedesmaceae), and Chromochloris zofngiensis (Chromochloridaceae); however, the four species share most of their genes. The Sphaeropleales possess a large number of genes for glycerolipid metabolism and sugar assimilation, which suggests that this order is capable of both heterotrophic and mixotrophic lifestyles in nature. Comparison of transporter genes suggests that the Sphaeropleales can adapt to diferent natural environmental conditions, such as salinity and low metal concentrations. Chlorophyceae are genetically, morphologically, and ecologically diverse class of green algae1. -
Raphidocelis Subcapitata
UHI Research Database pdf download summary Comparative genome analysis of test algal strain NIVA-CHL1 (Raphidocelis subcapitata) maintained in microalgal culture collections worldwide Yamagishi, Takahiro; Yamaguchi, Haruyo; Suzuki, Shigekatsu; Yoshikawa, Mayumi; Jameson, Ian; Lorenz, Maike; Nobles, David R.; Campbell, Christine; Seki, Masanori; Kawachi, Masanobu; Yamamoto, Hiroshi; Cao, Yi Published in: PLoS ONE Publication date: 2020 The re-use license for this item is: CC BY The Document Version you have downloaded here is: Publisher's PDF, also known as Version of record The final published version is available direct from the publisher website at: 10.1371/journal.pone.0241889 Link to author version on UHI Research Database Citation for published version (APA): Yamagishi, T., Yamaguchi, H., Suzuki, S., Yoshikawa, M., Jameson, I., Lorenz, M., Nobles, D. R., Campbell, C., Seki, M., Kawachi, M., Yamamoto, H., & Cao, Y. (Ed.) (2020). Comparative genome analysis of test algal strain NIVA-CHL1 (Raphidocelis subcapitata) maintained in microalgal culture collections worldwide. PLoS ONE, 15(11), [e0241889]. https://doi.org/10.1371/journal.pone.0241889 General rights Copyright and moral rights for the publications made accessible in the UHI Research Database are retained by the authors and/or other copyright owners and it is a condition of accessing publications that users recognise and abide by the legal requirements associated with these rights: 1) Users may download and print one copy of any publication from the UHI Research Database for the purpose of private study or research. 2) You may not further distribute the material or use it for any profit-making activity or commercial gain 3) You may freely distribute the URL identifying the publication in the UHI Research Database Take down policy If you believe that this document breaches copyright please contact us at [email protected] providing details; we will remove access to the work immediately and investigate your claim.