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EMODnet Thematic Lot n° 5 Biology EMODnet Phase 2 – Final report Reporting Period: 01/09/2013 – 01/09/2016 Simon Claus1, Dan Lear2, Daphnis De Pooter1, Leen Vandepitte1, Nicolas Bailly3, Olivier Beauchard4, Peter Herman4, Lennert Tyberghein1, Klaas Deneudt1, Francisco Souza Dias1, Francisco Hernandez1, and project partners5 1: Flanders Marine Institute (VLIZ, Belgium) 2: Marine Biological Association (MBA, United Kingdom) 3: Hellenic Centre for Marine Research (HCMR, Greece) 4: Royal Netherlands Institute for Sea Research (NIOZ, The Netherlands) 5: The International Council for Exploration of the Sea (ICES), the Sir Alister Hardy Foundation for Ocean Science (SAHFOS, United Kingdom), the Université de Liège, GeoHydrodynamics and Environment Research (GHER, Belgium), the Global Biodiversity Information Facility (GBIF), the University of Bremen, Centre for Marine Environmental Sciences (MARUM, Germany), the Marine Information Service (MARIS, The Netherlands), the Swedish Meteorological and Hydrological Institute (SMHI, Sweden), the Instituto Español de Oceanografía (IEO, Spain), the Havforskningsinstituttet Institute of Marine Research (IMR, Norway), the Institut Français de Recherche pour l'Exploitation de la Mer (IFREMER, France), the Istituto Nazionale di Oceanografia e di Geofisica Sperimentale, Section of Oceanography (OGS, Italy), the Aarhus University, DCE-Danish Centre for Environment and Energy (Denmark), the Institute for Agricultural and Fisheries Research (ILVO, Belgium), the Stichting Deltares (The Netherlands) and IMARES (The Netherlands), University of Auckland (New Zealand), IMAR - DOP/UAç - Universidade dos Açores (IMAR, Portugal), the Instytut Meteorologii i Gospodarki Wodnej (IMGW, Poland) Date: 15/10/2016 Final Report –EMODnet Biology Table of Content List of abbreviations and acronyms ............................................................................................................ 4 Executive summary ..................................................................................................................................... 6 1. Introduction ....................................................................................................................................... 19 2. Highlights of the project .................................................................................................................... 20 3. Description of the work done ............................................................................................................ 21 WP1: Project Management ................................................................................................................... 21 WP2: Identification and collection of species, species attributes and species indicator information . 22 WP3: Access to marine biological data ................................................................................................. 28 WP4: Data archaeology and rescue ...................................................................................................... 48 WP5: Creation of gridded abundance data products ........................................................................... 53 WP6: Technical update EMODnet Biology portal & link to other portals ............................................. 61 4. Challenges encountered during the project ...................................................................................... 67 5. Analysis of performance and lessons learned ................................................................................... 69 6. Analysis of sustainability .................................................................................................................... 76 7. User Feedback ................................................................................................................................... 77 8. Allocation of project resources .......................................................................................................... 79 9. Outreach and communication activities............................................................................................ 80 10. Evolution of Progress Indicators .................................................................................................... 87 Annexes ................................................................................................................................................... 100 Annex 1: Marine biological data in EMODnet Biology – new datasets made available during EMODnet II: : 01/09/2013 – 01/09/2016 ............................................................................................................. 100 Annex 2: Institutes making available marine biological datasets during EMODnet II: : 01/09/2013 – 01/09/2016 .......................................................................................................................................... 119 Annex 3: Detailed overview of data providing organisations of EMODnet II per regional sea .......... 124 Baltic Sea ....................................................................................................................................................... 124 Bay of Biscay, Iberian Coast and Macaronesia .............................................................................................. 127 2 Final Report –EMODnet Biology Black Sea and Sea of Azov ............................................................................................................................. 135 Greater North Sea and Celtic Sea .................................................................................................................. 137 Mediterranean Sea ........................................................................................................................................ 149 Norwegian Sea, Arctic Ocean, Iceland Sea and Sea of Jan Mayen ................................................................ 157 Annex 4: List of data products ............................................................................................................. 161 Annex 5: References ............................................................................................................................ 164 3 Final Report –EMODnet Biology List of abbreviations and acronyms CITES: Convention on International Trade in Endangered Species of Wild Fauna and Flora CORESET: Operationalization of HELCOM core indicators DIVA: Data-Interpolating Variational Analysis, allows the spatial interpolation of data (analysis) in an optimal way, comparable to optimal interpolation DwC: The Darwin Core is body of standards. It includes a glossary of terms (in other contexts these might be called properties, elements, fields, columns, attributes, or concepts) intended to facilitate the sharing of information about biological diversity by providing reference definitions, examples, and commentaries. The Darwin Core is primarily based on taxa, their occurrence in nature as documented by observations, specimens, samples, and related information EMODnet: European Marine Observation and Data Network ESFRI: European Strategy Forum on Research Infrastructures EurOBIS: European Ocean Biogeographic Information System, a distributed system that allows to search multiple datasets simultaneously for biogeographic information on marine organisms in European waters EUBON: European Biodiversity Observation Network FAO: Food and Agriculture Organization of the United Nations HELCOM: Baltic Marine Environment Protection Commission - Helsinki Commission ICES: International Council for the Exploration of the Sea ICGCOBAM: Intersessional Correspondence Group on the Coordination of Biodiversity Assessment and Monitoring, OSPAR expert group IPT: Integrated Publishing Toolkit (IPT), a free open source software tool written in Java that is used to publish and share biodiversity datasets IUCN: International Union for Conservation of Nature MedOBIS: Mediterranean node of Ocean Biogeographic Information System 4 Final Report –EMODnet Biology MoF: Measurement Or Facts, an element form the data scheme to Support generic measurements or facts as defined in Darwin Core. MSFD: Marine Strategy Framework Directive, a European instrument aiming at Good Environmental Status (GES) of the EU's marine waters by 2020 NODC: National Oceanographic Data Centre OBIS: Ocean Biogeographic Information System: OBIS strives to document the ocean's diversity, distribution and abundance of life. Created by the Census of Marine Life, OBIS is now part of the Intergovernmental Oceanographic Commission (IOC) of UNESCO, under its International Oceanographic Data and Information Exchange (IODE) programme OGC: Open Geospatial Consortium OSPAR: Convention for the Protection of the Marine Environment of the North-East Atlantic OOPS: Operational Oceanographic Products and Services, proposal formulated by ICES to assist in the ICES advisory process SDN: SeaDataNet, an infrastructure linking 45 national oceanographic data centres and marine data centres WoRMS: World Register of Marine Species, an authoritative and comprehensive list of names of marine organisms, including information on synonymy. ERMS is the European component of WoRMS WRIMS: World Register of Introduced Marine Species, 5 Final Report –EMODnet Biology Executive summary In this project a consortium of 23 institutes responsible for safeguarding and disseminating marine biological data collaborated to further develop the Biology component of the European Marine
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