Classification and Phylogenetic Relationships of African Tilapiine
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Index INDEX Note: page numbers in italics refer to fi gures, those in bold refer to tables and boxes. abducens nerve 55 activity cycles 499–522 inhibition 485 absorption effi ciency 72 annual patterns 515, 516, 517–22 interactions 485–6 abyssal zone 393 circadian rhythms 505 prey 445 Acanthaster planci (Crown-of-Thorns Starfi sh) diel patterns 499, 500, 501–2, 503–4, reduction 484 579 504–7 aggressive mimicry 428, 432–3 Acanthocybium (Wahoo) 15 light-induced 499, 500, 501–2, 503–4, aggressive resemblance 425–6 Acanthodii 178, 179 505 aglomerular 52 Acanthomorpha 284–8, 289 lunar patterns 507–9 agnathans Acanthopterygii 291–325 seasonal 509–15 gills 59, 60 Atherinomorpha 293–6 semilunar patterns 507–9 osmoregulation 101, 102 characteristics 291–2 supra-annual patterns 515, 516, 517–22 phylogeny 202 distribution 349, 350 tidal patterns 506–7 ventilation 59, 60 jaws 291 see also migration see also hagfi shes; lampreys Mugilomorpha 292–3, 294 adaptive response 106 agnathous fi shes see jawless fi shes pelagic 405 adaptive zones 534 agonistic interactions 83–4, 485–8 Percomorpha 296–325 adenohypophysis 91, 92 chemically mediated 484 pharyngeal jaws 291 adenosine triphosphate (ATP) 57 sound production 461–2 phylogeny 292, 293, 294 adipose fi n 35 visual 479 spines 449, 450 adrenocorticotropic hormone (ACTH) 92 agricultural chemicals 605 Acanthothoraciformes 177 adrianichthyids 295 air breathing 60, 61–2, 62–4 acanthurids 318–19 adult fi shes 153, 154, 155–7 ammonia production 64, 100–1 Acanthuroidei 12, 318–19 death 156–7 amphibious 60 Acanthurus bahianus -
Fish, Various Invertebrates
Zambezi Basin Wetlands Volume II : Chapters 7 - 11 - Contents i Back to links page CONTENTS VOLUME II Technical Reviews Page CHAPTER 7 : FRESHWATER FISHES .............................. 393 7.1 Introduction .................................................................... 393 7.2 The origin and zoogeography of Zambezian fishes ....... 393 7.3 Ichthyological regions of the Zambezi .......................... 404 7.4 Threats to biodiversity ................................................... 416 7.5 Wetlands of special interest .......................................... 432 7.6 Conservation and future directions ............................... 440 7.7 References ..................................................................... 443 TABLE 7.2: The fishes of the Zambezi River system .............. 449 APPENDIX 7.1 : Zambezi Delta Survey .................................. 461 CHAPTER 8 : FRESHWATER MOLLUSCS ................... 487 8.1 Introduction ................................................................. 487 8.2 Literature review ......................................................... 488 8.3 The Zambezi River basin ............................................ 489 8.4 The Molluscan fauna .................................................. 491 8.5 Biogeography ............................................................... 508 8.6 Biomphalaria, Bulinis and Schistosomiasis ................ 515 8.7 Conservation ................................................................ 516 8.8 Further investigations ................................................. -
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CICHLIFORMES: Cichlidae (part 5) · 1 The ETYFish Project © Christopher Scharpf and Kenneth J. Lazara COMMENTS: v. 10.0 - 11 May 2021 Order CICHLIFORMES (part 5 of 8) Family CICHLIDAE Cichlids (part 5 of 7) Subfamily Pseudocrenilabrinae African Cichlids (Palaeoplex through Yssichromis) Palaeoplex Schedel, Kupriyanov, Katongo & Schliewen 2020 palaeoplex, a key concept in geoecodynamics representing the total genomic variation of a given species in a given landscape, the analysis of which theoretically allows for the reconstruction of that species’ history; since the distribution of P. palimpsest is tied to an ancient landscape (upper Congo River drainage, Zambia), the name refers to its potential to elucidate the complex landscape evolution of that region via its palaeoplex Palaeoplex palimpsest Schedel, Kupriyanov, Katongo & Schliewen 2020 named for how its palaeoplex (see genus) is like a palimpsest (a parchment manuscript page, common in medieval times that has been overwritten after layers of old handwritten letters had been scraped off, in which the old letters are often still visible), revealing how changes in its landscape and/or ecological conditions affected gene flow and left genetic signatures by overwriting the genome several times, whereas remnants of more ancient genomic signatures still persist in the background; this has led to contrasting hypotheses regarding this cichlid’s phylogenetic position Pallidochromis Turner 1994 pallidus, pale, referring to pale coloration of all specimens observed at the time; chromis, a name -
Hered 347 Master..Hered 347 .. Page702
Heredity 80 (1998) 702–714 Received 3 June 1997 Phylogeny of African cichlid fishes as revealed by molecular markers WERNER E. MAYER*, HERBERT TICHY & JAN KLEIN Max-Planck-Institut f¨ur Biologie, Abteilung Immungenetik, Corrensstr. 42, D-72076 T¨ubingen, Germany The species flocks of cichlid fish in the three great East African Lakes, Victoria, Malawi, and Tanganyika, have arisen in each lake by explosive adaptive radiation. Various questions concerning their phylogeny have not yet been answered. In particular, the identity of the ancestral founder species and the monophyletic origin of the haplochromine cichlids from the East African lakes have not been established conclusively. In the present study, we used the anonymous nuclear DNA marker DXTU1 as a step towards answering these questions. A 280 bp-fragment of the DXTU1 locus was amplified by the polymerase chain reaction from East African lacustrine species, the East African riverine cichlid species Haplochromis bloyeti, H. burtoni and H. sparsidens, and other African cichlids. Sequencing revealed several indels and substitutions that were used as cladistically informative markers to support a phylogenetic tree constructed by the neighbor-joining method. The topology, although not supported by high bootstrap values, corresponds well to the geographical distribution and previous classifica- tion of the cichlids. Markers could be defined that: (i) differentiate East African from West African cichlids; (ii) distinguish the riverine and Lake Victoria/Malawi haplochromines from Lake Tanganyika cichlids; and (iii) indicate the existence of a monophyletic Lake Victoria cichlid superflock which includes haplochromines from satellite lakes and East African rivers. In order to resolve further the relationship of East African riverine and lacustrine species, mtDNA cytochrome b and control region segments were sequenced. -
Identification and Biology of Diplotaxodon, Rhamphochromis and Pallidochromis
190 Diplotaxodon, Rhamphochromis & Pallidochromis / Turner et al. Identification and Biology of Diplotaxodon, Rhamphochromis and Pallidochromis George F. Turner, Rosanna L. Robinson, Paul W. Shaw & Gary R. Carvalho Abstract Introduction We present preliminary morphological and mo- The genera Rhamphochromis Regan, 1922 and lecular taxonomic studies of the genera Rhampho- Diplotaxodon Trewavas, 1935 include the most chromis, Diplotaxodon and Pallidochromis, along with pelagic of Lake Malawi’s cichlids (Turner, 1996). notes on their identification, distribution and ecol- Pallidochromis Turner, 1994, a more benthic form, is ogy. We suggest that Rhamphochromis is comprised also considered in this chapter, as it appears mor- of eight to ten species: R. longiceps, R. woodi, R. phologically intermediate between Diplotaxodon macrophthalmus, R. esox, possibly R. ferox and four and Rhamphochromis (Turner 1994a). Rhampho- or five undescribed species. We suggest that R. chromis species are streamlined elongated predators lucius and R. brevis may be junior synonyms of R. of fish and zooplankton. They usually have large woodi. We also believe that Rhamphochromis teeth and jaws. Diplotaxodon comprises a heteroge- leptosoma and R. melanotus are junior synonyms of neous mix of small-toothed silvery species with R. esox. We consider that the two types of R. ferox upwardly-angled jaws. The genus includes zoo- are not conspecific and we designate a lectotype. planktivores and predators of small pelagic fish. However, we have not yet been able to positively The genus Rhamphochromis was described by identify this species from recent collections. Regan (1922), who took the type species as Diplotaxodon may contain anything from 11 to 22 or Rhamphochromis longiceps (Günther, 1864). -
Genome-Wide Microrna Screening in Nile Tilapia Reveals
www.nature.com/scientificreports OPEN Genome-wide microRNA screening in Nile tilapia reveals pervasive isomiRs’ transcription, sex-biased Received: 7 November 2016 Accepted: 15 May 2018 arm switching and increasing Published: xx xx xxxx complexity of expression throughout development Danillo Pinhal 1, Luiz A. Bovolenta2, Simon Moxon3, Arthur C. Oliveira1, Pedro G. Nachtigall1, Marcio L. Acencio4, James G. Patton5, Alexandre W. S. Hilsdorf6, Ney Lemke2 & Cesar Martins 7 MicroRNAs (miRNAs) are key regulators of gene expression in multicellular organisms. The elucidation of miRNA function and evolution depends on the identifcation and characterization of miRNA repertoire of strategic organisms, as the fast-evolving cichlid fshes. Using RNA-seq and comparative genomics we carried out an in-depth report of miRNAs in Nile tilapia (Oreochromis niloticus), an emergent model organism to investigate evo-devo mechanisms. Five hundred known miRNAs and almost one hundred putative novel vertebrate miRNAs have been identifed, many of which seem to be teleost-specifc, cichlid-specifc or tilapia-specifc. Abundant miRNA isoforms (isomiRs) were identifed with modifcations in both 5p and 3p miRNA transcripts. Changes in arm usage (arm switching) of nine miRNAs were detected in early development, adult stage and even between male and female samples. We found an increasing complexity of miRNA expression during ontogenetic development, revealing a remarkable synchronism between the rate of new miRNAs recruitment and morphological changes. Overall, our results enlarge vertebrate miRNA collection and reveal a notable diferential ratio of miRNA arms and isoforms infuenced by sex and developmental life stage, providing a better picture of the evolutionary and spatiotemporal dynamics of miRNAs. -
Movement of Transposable Elements Contributes to Cichlid Diversity
bioRxiv preprint doi: https://doi.org/10.1101/2020.02.26.961987; this version posted February 26, 2020. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC-ND 4.0 International license. Draft manuscript BIORXIV/2020/961987 Movement of transposable elements contributes to cichlid diversity Karen L. Carleton1, Matt Conte1, Milan Malinsky2,3, Sri Pratima Nandamuri1*, Ben Sandkam1&, Joana I Meier4,5,6,%, Salome Mwaiko4,5, Ole Seehausen4,5, Thomas D Kocher1 1Department of Biology, University of Maryland, College Park MD 20742 USA 2 Wellcome Sanger Institute, Cambridge, UK. 3Zoological Institute, University of Basel, Basel, Switzerland 4Aquatic Ecology and Evolution, Institute of Ecology and Evolution, University of Bern, 3012 Bern, Switzerland 5Department of Fish Ecology and Evolution, Centre for Ecology, Evolution & Biogeochemistry, Eawag: Swiss Federal Institute of Aquatic Science and Technology, 6047 Kastanienbaum, Switzerland 6Computational and Molecular Population Genetics Lab, Institute of Ecology and Evolution, University of Bern, 3012 Bern, Switzerland *Current address: John A Moran Center, University of Utah, Salt Lake City UT USA &Current address: Department of Zoology, University of British Columbia, Vancouver, BC, Canada %Current address: Department of Biology, University of Cambridge, Cambridge UK bioRxiv preprint doi: https://doi.org/10.1101/2020.02.26.961987; this version posted February 26, 2020. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. -
Bentho-Pelagic Divergence of Cichlid Feeding Architecture Was Prodigious and Consistent During Multiple Adaptive Radiations Within African Rift-Lakes
Bentho-Pelagic Divergence of Cichlid Feeding Architecture Was Prodigious and Consistent during Multiple Adaptive Radiations within African Rift-Lakes W. James Cooper1*, Kevin Parsons1, Alyssa McIntyre2, Brittany Kern1, Alana McGee-Moore1, R. Craig Albertson1 1 Department of Biology, Syracuse University, Syracuse, New York, United States of America, 2 School of Dental Medicine, University of Connecticut, Storrs, Connecticut, United States of America Abstract Background: How particular changes in functional morphology can repeatedly promote ecological diversification is an active area of evolutionary investigation. The African rift-lake cichlids offer a calibrated time series of the most dramatic adaptive radiations of vertebrate trophic morphology yet described, and the replicate nature of these events provides a unique opportunity to test whether common changes in functional morphology have repeatedly facilitated their ecological success. Methodology/Principal Findings: Specimens from 87 genera of cichlid fishes endemic to Lakes Tanganyka, Malawi and Victoria were dissected in order to examine the functional morphology of cichlid feeding. We quantified shape using geometric morphometrics and compared patterns of morphological diversity using a series of analytical tests. The primary axes of divergence were conserved among all three radiations, and the most prevalent changes involved the size of the preorbital region of the skull. Even the fishes from the youngest of these lakes (Victoria), which exhibit the lowest amount of skull shape -
Seleção Divergente Do Gene LWS Entre Ciclídeos Neotropicais E Africanos
Seleção divergente do gene LWS entre ciclídeos neotropicais e africanos. Item Type Thesis/Dissertation Authors Fabrin, Thomaz Mansini Carrenho Publisher Universidade Estadual de Maringá. Departamento de Biologia. Programa de Pós-Graduação em Ecologia de Ambientes Aquáticos Continentais. Download date 24/09/2021 05:32:32 Link to Item http://hdl.handle.net/1834/14994 UNIVERSIDADE ESTADUAL DE MARINGÁ CENTRO DE CIÊNCIAS BIOLÓGICAS DEPARTAMENTO DE BIOLOGIA PROGRAMA DE PÓS-GRADUAÇÃO EM ECOLOGIA DE AMBIENTES AQUÁTICOS CONTINENTAIS THOMAZ MANSINI CARRENHO FABRIN Seleção divergente do gene LWS entre ciclídeos neotropicais e africanos Maringá 2019 THOMAZ MANSINI CARRENHO FABRIN Seleção divergente do gene LWS entre ciclídeos neotropicais e africanos Tese apresentada ao Programa de Pós- graduação em Ecologia de Ambientes Aquáticos Continentais do Departamento de Biologia, Centro de Ciências Biológicas da Universidade Estadual de Maringá, como requisito parcial para obtenção do título de Doutor em Ecologia e Limnologia. Área de concentração: Biodiversidade. Orientador: Prof. Dr. Alberto José Prioli Maringá 2019 "Dados Internacionais de Catalogação-na-Publicação (CIP)" (Biblioteca Setorial - UEM. Nupélia, Maringá, PR, Brasil) Fabrin, Thomaz Mansini Carrenho, 1990- F127s Seleção divergente do gene LWS entre ciclídeos neotropicais e africanos / Thomaz Mansini Carrenho Fabrin. -- Maringá, 2019. 73 f. : il. Tese (doutorado em Ecologia de Ambientes Aquáticos Continentais)--Universidade Estadual de Maringá, Dep. de Biologia, 2019. Orientador: Prof. Dr. Alberto -
Bayesian Node Dating Based on Probabilities of Fossil Sampling Supports Trans-Atlantic Dispersal of Cichlid Fishes
Supporting Information Bayesian Node Dating based on Probabilities of Fossil Sampling Supports Trans-Atlantic Dispersal of Cichlid Fishes Michael Matschiner,1,2y Zuzana Musilov´a,2,3 Julia M. I. Barth,1 Zuzana Starostov´a,3 Walter Salzburger,1,2 Mike Steel,4 and Remco Bouckaert5,6y Addresses: 1Centre for Ecological and Evolutionary Synthesis (CEES), Department of Biosciences, University of Oslo, Oslo, Norway 2Zoological Institute, University of Basel, Basel, Switzerland 3Department of Zoology, Faculty of Science, Charles University in Prague, Prague, Czech Republic 4Department of Mathematics and Statistics, University of Canterbury, Christchurch, New Zealand 5Department of Computer Science, University of Auckland, Auckland, New Zealand 6Computational Evolution Group, University of Auckland, Auckland, New Zealand yCorresponding author: E-mail: [email protected], [email protected] 1 Supplementary Text 1 1 Supplementary Text Supplementary Text S1: Sequencing protocols. Mitochondrial genomes of 26 cichlid species were amplified by long-range PCR followed by the 454 pyrosequencing on a GS Roche Junior platform. The primers for long-range PCR were designed specifically in the mitogenomic regions with low interspecific variability. The whole mitogenome of most species was amplified as three fragments using the following primer sets: for the region between position 2 500 bp and 7 300 bp (of mitogenome starting with tRNA-Phe), we used forward primers ZM2500F (5'-ACG ACC TCG ATG TTG GAT CAG GAC ATC C-3'), L2508KAW (Kawaguchi et al. 2001) or S-LA-16SF (Miya & Nishida 2000) and reverse primer ZM7350R (5'-TTA AGG CGT GGT CGT GGA AGT GAA GAA G-3'). The region between 7 300 bp and 12 300 bp was amplified using primers ZM7300F (5'-GCA CAT CCC TCC CAA CTA GGW TTT CAA GAT GC-3') and ZM12300R (5'-TTG CAC CAA GAG TTT TTG GTT CCT AAG ACC-3'). -
A Population Genetic Assessment of Taxonomic Species: the Case of Lake Malawi Cichlid Fishes
Received: 14 January 2019 | Revised: 20 March 2019 | Accepted: 10 April 2019 DOI: 10.1111/1755-0998.13027 RESOURCE ARTICLE A population genetic assessment of taxonomic species: The case of Lake Malawi cichlid fishes Catarina Pinho1 | Vera Cardoso1 | Jody Hey2,3 1CIBIO/InBIO, Centro de Investigação em Biodiversidade e Recursos Abstract Genéticos, Universidade do Porto, Vairão, Organisms sampled for population-level research are typically assigned to species Portugal by morphological criteria. However, if those criteria are limited to one sex or life 2Rutgers, the State University of New Jersey, Piscataway, New Jersey stage, or the organisms come from a complex of closely related forms, the species 3CCGG, Center for Computational assignments may misdirect analyses. The impact of such sampling can be assessed Genetics and Genomics, Department of Biology, Temple University, Philadelphia, from the correspondence of genetic clusters, identified only from patterns of genetic Pennsylvania variation, to the species identified using only phenotypic criteria. We undertook this Correspondence protocol with the rock‐dwelling mbuna cichlids of Lake Malawi, for which species Jody Hey, CCGG, Department of Biology, within genera are usually identified using adult male coloration patterns. Given high Temple University, Philadelphia, PA. Email: [email protected] local endemism of male colour patterns, and considerable allele sharing among spe- cies, there persists considerable taxonomic uncertainty in these fishes. Over 700 Funding information National Institutes of Health, Grant/Award individuals from a single transect were photographed, genotyped and separately as- Number: R01GM078204; Fundação para signed: (a) to morphospecies using photographs; and (b) to genetic clusters using five a Ciência e a Tecnologia, Grant/Award Number: PTDC/BIA‐BDE/66210/2006 widely used methods. -
The Generic and Infrageneric Taxa Described by Ethelwynn Trewavas
Environmental Biology o f Fishes 41: 55-61,1994. © 1994 Kluwer Academic Publishers. Printed in the Netherlands. The generic and infrageneric taxa described by Ethelwynn Trewavas P. Humphry Greenwood J.L.B. Smith Institute o f Ichthyology, Private Bag 1015, Grahamstown, 6140 South Africa Either as the sole author, or in collaboration (especially with C. Tate Regan), Ethelwynn Trewavas was re sponsible for describing and naming at least 462 genera, subgenera, species and subspecies. Doubtless, in compiling this index (which, intentionally does not include nomina nova she established) I have overlooked Trewavas taxa; for those oversights I can only apologise. In many respects, as she herself often remarked, aspects of systematics, and read extensively in the Ethelwynn entered the field of taxonomic ichthyol literature of evolutionary biology. Those wide- ogy at a fortunate time. It was a time when large ranging interests were very obvious throughout my collections of fishes were arriving in the British Mu long association with her, particularly so during the seum (Natural History), many from the still poorly time when, in the early 1960’s, Donn Rosen and I sampled Great Lakes of Africa, others from the were roughing-out our ideas of a phylogenetic clas then little explored deeper oceanic waters. Above sification for teleosts (Greenwood et al. 1966) and all, she had the great advantage of having Tate Re often had long and beneficial discussions with her. gan as her guide and mentor. He too was fortunate Her few publications in the field of higher-level in having Ethelwynn as his student and assistant, taxonomy are surprising, too, when one recalls that and both were lucky to be working at a period when her major doctoral research (on the hyoid and la financially and philosophically the Museums of the rynx of Anura) was in large part stimulated by No world were able to concentrate their activities ble’s work on the phylogeny of the group, a study mainly on research.