DOCSLIB.ORG

Dinosaur Thermoregulation Were They “Warm Blooded”?

Total Page：16

File Type：pdf, Size：1020Kb

Download full-text PDF Read full-text
Dinosaur Thermoregulation Were They “Warm Blooded”? Department of Geological Sciences | Indiana University Dinosaurs and their relatives (c) 2015, P. David Polly Geology G114 Dinosaur thermoregulation Were they “warm blooded”? Thermogram of a lion Department of Geological Sciences | Indiana University Dinosaurs and their relatives (c) 2015, P. David Polly Geology G114 Body temperature in endotherms and ectotherms Thermogram of ostriches Thermogram of a snake wrapped around a human arm Thermogram of a python held by people Thermogram of a lion Department of Geological Sciences | Indiana University Dinosaurs and their relatives (c) 2015, P. David Polly Geology G114 Physiology, metabolism, and dinosaurs? Ornithopods Birds Sauropods Dromeosaurs Tyrannosaurus Ceratopsians Pachycephalosaurs Crocodilians Stegosaurs Ankylosaurs Lizards and snakes Lizards ? ? ? ? ? ? ? Department of Geological Sciences | Indiana University Dinosaurs and their relatives (c) 2015, P. David Polly Geology G114 “extant phylogenetic bracket” Using phylogenetic logic to reconstruct biology of extinct animals. Features observed in living animals can be traced back to common ancestor. This suggests that extinct clades that fall between are likely to have similar in features even if they cannot be observed directly in the fossils. Witmer, 1995 Department of Geological Sciences | Indiana University Dinosaurs and their relatives (c) 2015, P. David Polly Geology G114 Thermoregulation Maintaining body temperature within limited boundaries regardless of temperature of the surrounding environment. Endotherm vs. Ectotherm Endotherms use internal metabolic heat to regulate themselves, ectotherms use external sources of heat (and cool). Mammals and birds are endotherms, most other vertebrates are ectotherms. Homeotherm vs. Poikilotherm Homeotherms have a constant body temperature, poikilotherms have a variable body temperature. Mammals are homeotherms, but so are fish that live in water of constant body temperature. Department of Geological Sciences | Indiana University Dinosaurs and their relatives (c) 2015, P. David Polly Geology G114 Endothermic groups In-between groups Mammalia (mammals) Very large animals (inertial Aves (birds) homeotherms) Animals with unusual physiology (tuna are endothermic) Unknown groups Ecothermic groups Non-avian dinosaurs most fishes Amphibia Pelycosaurs (non-mammalian synapsids) Lepidosauria (lizards and snakes) Crocodilians Department of Geological Sciences | Indiana University Dinosaurs and their relatives (c) 2015, P. David Polly Geology G114 Source of internal heat Anaerobic metabolism Produces lactic acid Less energy stored in ATP Aerobic metabolism Produces carbon dioxide Stores more energy in ATP Department of Geological Sciences | Indiana University Dinosaurs and their relatives (c) 2015, P. David Polly Geology G114 Duration of energy output in ectotherms and endotherms Department of Geological Sciences | Indiana University Dinosaurs and their relatives (c) 2015, P. David Polly Geology G114 Mechanisms for regulating body temperature Regulate production of heat by changing metabolism • shivering • torpor Regulate amount of blood at surface of body • “counter current” exchange (arteries and veins intertwine in legs and other places so that outgoing blood is cooled by returning blood and vice versa) • dilation and constriction of blood vessels (blushing, shock) Insulation • hair • feathers • subcutaneous fat Evaporative cooling • sweating • panting Behavioral regulation • sunning • moving into shade • denning • lying on cool mud or in water • Expose wing surfaces Department of Geological Sciences | Indiana University Dinosaurs and their relatives (c) 2015, P. David Polly Geology G114 Behavioral thermoregulation in an ectotherm From Shine, 1991, Australian Snakes, A Natural History, Cornell. Department of Geological Sciences | Indiana University Dinosaurs and their relatives (c) 2015, P. David Polly Geology G114 Changes in body temperature in ectothermic poikilotherm 95F From Shine, 1991, Australian Snakes, A Natural History, Cornell. Department of Geological Sciences | Indiana University Dinosaurs and their relatives (c) 2015, P. David Polly Geology G114 Poikilotherm and variation in body temperature Department of Geological Sciences | Indiana University Dinosaurs and their relatives (c) 2015, P. David Polly Geology G114 Inertial homeothermy probable in large dinosaurs Large animals retain heat because their surface area is proportionally smaller. An inertial homeotherm is an ectotherm that is so large that it cannot exchange heat across the surface fast enough to keep up with changing environment temperature. Department of Geological Sciences | Indiana University Dinosaurs and their relatives (c) 2015, P. David Polly Geology G114 Metabolic rate is related to body size in ectotherms (mammals) 1.50 /hr/g) 2 1.00 0.50 0.00 -0.50 -1.00 Logmetabolic rate(O -1.50 -4.0 -2.0 0.0 2.0 4.0 Log body mass (kg) Data from Eisenberg, 1981 Department of Geological Sciences | Indiana University Dinosaurs and their relatives (c) 2015, P. David Polly Geology G114 Vertebrate dietary categories Omnivore - mixed diet Frugivore - diet Herbivore - generalized specializing on fruits (only diet on plant leaves and exists after the stems Cretaceous) Granivore - diet Piscivore - carnivorous diet specializing on seeds and specializing on fish nuts Insectivore - diet specializing on insects (and sometimes other Carnivore - generalized diet invertebrates, like of flesh and fat worms) Department of Geological Sciences | Indiana University Dinosaurs and their relatives (c) 2015, P. David Polly Geology G114 Energy value in different food sources Small ectotherms = high metabolic rate = high calorie diet = small animals must be insectivores and granivores Large ectotherms = lower metabolic rate = lower calorie diet = large animals can be herbivores and frugivores 700 525 350 kcal per 100 g kcal per 175 0 Insects Nuts and Seeds Meat and Fat Fruits Leaves and Grasses Department of Geological Sciences | Indiana University Dinosaurs and their relatives (c) 2015, P. David Polly Geology G114 Skeletal evidence for conserving heat Turbinal bones Department of Geological Sciences | Indiana University Dinosaurs and their relatives (c) 2015, P. David Polly Geology G114 Deterministic growth and physiology Deterministic growth: rapid growth to fixed adult size (birds and mammals) Indeterminate growth: slower growth with no maximum size Growth patterns are related to endothermy Department of Geological Sciences | Indiana University Dinosaurs and their relatives (c) 2015, P. David Polly Geology G114 Deterministic growth in dinosaurs Department of Geological Sciences | Indiana University Dinosaurs and their relatives (c) 2015, P. David Polly Geology G114 Rates of growth in dinosaurs Department of Geological Sciences | Indiana University Dinosaurs and their relatives (c) 2015, P. David Polly Geology G114 Structure of mammalian bone Haversian system - blood vessels nourish osteocytes, chondrocytes, and provide minerals for bone deposition in concentric rings around the vessels Kardong 1995, Vertebrates Department of Geological Sciences | Indiana University Dinosaurs and their relatives (c) 2015, P. David Polly Geology G114 Histology of fossil bone Osteons (or Haversian structures Modern bone Jurassic age plesiosaur (Martill, 1991, Bones as stones) Department of Geological Sciences | Indiana University Dinosaurs and their relatives (c) 2015, P. David Polly Geology G114 Bone histology and the rate of growth in dinosaurs Padian, Horner and de Ricqlès, 2004, J. Vert. Paleo, 24: 555-571. Department of Geological Sciences | Indiana University Dinosaurs and their relatives (c) 2015, P. David Polly Geology G114 Climate and ectotherms Department of Geological Sciences | Indiana University Dinosaurs and their relatives (c) 2015, P. David Polly Geology G114 Titanoboa and temperature in the Paleogene Department of Geological Sciences | Indiana University Dinosaurs and their relatives (c) 2015, P. David Polly Geology G114 How big was Titanoboa? Regression of SVL on vertebra width P < 0.001, R2 = 0.7 Total body length: 12.82 m +/- 2.18 m (42 ft) Body mass: 1,135 kg (1.27 tons) Living anaconda: Record = 7 m, Average = 6.5 m An adult Ball python slithering over a Living python: Record = 9 m, Average = 6 m Titanoboa vertebra. (c) 2009, Jason J. Head (Graphic by Brady MacDonald (c) 2009, LA Times) Head, J.J., J.I. Bloch, A.K. Hastings, J.R. Bourque, E. Cadena, F. Herrera, P.D. Polly, and C.A. Jaramillo. 2009. Giant boine snake from a Paleocene Neotropical rainforest indicates hotter past equatorial temperatures. Nature, 457: 715-718. Department of Geological Sciences | Indiana University Dinosaurs and their relatives (c) 2015, P. David Polly Geology G114 Global Climate for the last 65 million years Present 14 C (57.2 F) Last Glacial Maximum 9 C (48.2 F) Miocene Climatic Optimum 21 C (70 F) Eocene thermal maximum 23-26 C (73-79 F) (Zachos et al., 2001. Science, 292: 686-693) Department of Geological Sciences | Indiana University Dinosaurs and their relatives (c) 2015, P. David Polly Geology G114 Titanoboa’s world (Zachos et al., 2001. Science, 292: 686-693) (© 2010, Ron Blakey, NAU Geology) Department of Geological Sciences | Indiana University Dinosaurs and their relatives (c) 2015, P. David Polly Geology G114 Climate in the Paleogene circles = no frost intolerant plants squares = palms triangles = cycads, gingers or tree ferns Eocene Metasequoia stumps, Axel Heiberg Island (photo by Greenwood) (Greenwood & Wing, 1995. Geology, 23: 1044-148. Department
Load more

Recommended publications
  • Effect of Ethanol on Thermoregulation in the Goldfish, Carassius Auratus
    Portland State University PDXScholar Dissertations and Theses Dissertations and Theses 1986 Effect of ethanol on thermoregulation in the goldfish, Carassius auratus Candace Sharon O'Connor Portland State University Follow this and additional works at: https://pdxscholar.library.pdx.edu/open_access_etds Part of the Biology Commons, and the Physiology Commons Let us know how access to this document benefits ou.y Recommended Citation O'Connor, Candace Sharon, "Effect of ethanol on thermoregulation in the goldfish, Carassius auratus" (1986). Dissertations and Theses. Paper 3703. https://doi.org/10.15760/etd.5587 This Thesis is brought to you for free and open access. It has been accepted for inclusion in Dissertations and Theses by an authorized administrator of PDXScholar. Please contact us if we can make this document more accessible: [email protected]. AN ABSTRACT OF THE THESIS of Candace Sharon O'Connor for the Master of Science in Biology presented May 16, 1986. Title: Effect of Ethanol on Thermoregulation in the Goldfish, Carassius auratus. APPROVED BY MEMBERS OF THE TIIBSIS COMMITTEE: Leonard Simpson In an attempt to elucidate the mechanism by which ethanol affects vertebrate thermoregulation, the effect of ethanol on temperature selection was studied in the goldfish, Carassius auratus. Ethanol was administered to 10 to 15 g fish by mixing it in the water of a temperature gradient. The dose response curve was very steep between 0.5% (v/v) ethanol (no response) and 0.7% (significant lowering of selected temperature in treated fish). Fish were exposed to concentrations of ethanol as high as 1.7%, at which concentration most experimental fish lost their ability to swim upright in the water.
    [Show full text]
  • (Somniosus Pacificus) Predation on Steller Sea Lions (Eumetopias
    297 Abstract—Temperature data re- In cold blood: evidence of Pacific sleeper shark ceived post mortem in 2008–13 from 15 of 36 juvenile Steller sea (Somniosus pacificus) predation on Steller sea lions (Eumetopias jubatus) that lions (Eumetopias jubatus) in the Gulf of Alaska had been surgically implanted in 2005–11 with dual life history 1,2 transmitters (LHX tags) indicat- Markus Horning (contact author) ed that all 15 animals died by Jo-Ann E. Mellish3,4 predation. In 3 of those 15 cases, at least 1 of the 2 LHX tags was Email address for contact author: [email protected] ingested by a cold-blooded pred- ator, and those tags recorded, 1 Department of Fisheries and Wildlife and 3 Alaska Sea Life Center immediately after the sea lion’s Marine Mammal Institute P.O. Box 1329 death, temperatures that cor- College of Agricultural Sciences Seward, Alaska 99664 responded to deepwater values. Oregon State University 4 School of Fisheries and Ocean Sciences 2030 SE Marine Science Drive These tags were regurgitated or University of Alaska Fairbanks Newport, Oregon 97365 passed 5–11 days later by preda- P.O. Box 757220 2 tors. Once they sensed light and Coastal Oregon Marine Experiment Station Fairbanks, Alaska 99755-7220 Oregon State University air, the tags commenced trans- 2030 SE Marine Science Drive missions as they floated at the Newport, Oregon 97365 ocean surface, reporting tem- peratures that corresponded to regional sea-surface estimates. The circumstances related to the tag in a fourth case were ambig- The western distinct population seg- mercial fisheries (National Research uous.
    [Show full text]
  • R~;: PHYSIOLOGICAL, MIGRATORIAL
    ....----------- 'r~;: i ! 'r; Pa/eont .. 62(4), 1988, pp. 64~52 Copyright © 1988, The Paleontological Society 0022-3360/88/0062-0640$03.00 PHYSIOLOGICAL, MIGRATORIAL, CLIMATOLOGICAL, GEOPHYSICAL, SURVIVAL, AND EVOLUTIONARY IMPLICATIONS OF CRETACEOUS POLAR DINOSAURS GREGORY S. PAUL 3109 North Calvert Street, Baltimore, Maryland 21218 ABSTRACTT- he presence of Late Cretaceous social dinosaurs in polar regions confronted them with winter conditions of extended dark, coolness, breezes, and precipitation that could best be coped with via an endothermic homeothermic physiology of at least the tenrec level. This is true whether the dinosaurs stayed year round in the polar regime-which in North America extended from Alaska south to Montana-or if they migrated away from polar winters. More reptilian physiologies fail to meet the demands of such winters -in certain key ways, a· point tentatively confirmed by the apparent failure of giant Late Cretaceous phobosuchid crocodilians to dwell north of Montana. Low metabolisms were also insufficient for extended annual migrations away from and towards the poles. It is shown that even high metabolic rate dinosaurs probably remained in their polar habitats year-round. The possibility that dinosaurs had avian-mammalian metabolic systems, and may have borne insulation at least seasonally, severely limits their use as polar paleoclimatic and Earth axial tilt indicators. Polar dinosaurs may have been a center of dinosaur evolution. The possible ability of polar dinosaurs to cope with conditions of cool and dark challenges theories that a gradual temperature decline, or a sudden, meteoritic or volcanic induced collapse in temperature and sunlight, destroyed the dinosaurs. INTRODUCTION America suggests that dinosaurs were regularly crossing, and NCREASINGNUMBERSof remains show that dinosaurs lived living upon, the Bering Land Bridge within a few degrees of the I near the North and South Poles during the Cretaceous.
    [Show full text]
  • Determinants and Consequences of Interspeciwc Body Size Variation in Tetraphyllidean Tapeworms
    Oecologia (2009) 161:759–769 DOI 10.1007/s00442-009-1410-1 COMMUNITY ECOLOGY - ORIGINAL PAPER Determinants and consequences of interspeciWc body size variation in tetraphyllidean tapeworms Haseeb Sajjad Randhawa · Robert Poulin Received: 3 December 2008 / Accepted: 20 June 2009 / Published online: 10 July 2009 © Springer-Verlag 2009 Abstract Tetraphyllidean cestodes are cosmopolitan, are relatively important variables in models explaining remarkably host speciWc, and form the most speciose and interspeciWc variations in tetraphyllidean tapeworm length. diverse group of helminths infecting elasmobranchs In addition, a negative relationship between tetraphyllidean (sharks, skates and rays). They show substantial interspe- body size and intensity of infection was apparent. These ciWc variation in a variety of morphological traits, including results suggest that space constraints and ambient tempera- body size. Tetraphyllideans represent therefore, an ideal ture, via their eVects on metabolism and growth, determine group in which to examine the relationship between para- adult tetraphyllidean cestode size. Consequently, a trade-oV site body size and abundance. The individual and combined between size and numbers is possibly imposed by external eVects of host size, environmental temperature, host habi- forces inXuencing host size, hence limiting physical space tat, host environment, host physiology, and host type (all or other resources available to the parasites. likely correlates of parasite body size) on parasite length were assessed using general linear model analyses using Keywords Tetraphyllidea · Abundance · Body size · data from 515 tetraphyllidean cestode species (182 species Depth · Latitude were included in analyses). The relationships between tetra- phyllidean cestode length and intensity and abundance of infection were assessed using simple linear regression anal- Introduction yses.
    [Show full text]
  • Modeling and Exploiting Microbial Temperature Response
    processes Review Modeling and Exploiting Microbial Temperature Response Philipp Noll, Lars Lilge, Rudolf Hausmann and Marius Henkel * Institute of Food Science and Biotechnology, Department of Bioprocess Engineering (150k), University of Hohenheim, Fruwirthstr. 12, 70599 Stuttgart, Germany; [email protected] (P.N.); [email protected] (L.L.); [email protected] (R.H.) * Correspondence: [email protected] Received: 15 December 2019; Accepted: 14 January 2020; Published: 17 January 2020 Abstract: Temperature is an important parameter in bioprocesses, influencing the structure and functionality of almost every biomolecule, as well as affecting metabolic reaction rates. In industrial biotechnology, the temperature is usually tightly controlled at an optimum value. Smart variation of the temperature to optimize the performance of a bioprocess brings about multiple complex and interconnected metabolic changes and is so far only rarely applied. Mathematical descriptions and models facilitate a reduction in complexity, as well as an understanding, of these interconnections. Starting in the 19th century with the “primal” temperature model of Svante Arrhenius, a variety of models have evolved over time to describe growth and enzymatic reaction rates as functions of temperature. Data-driven empirical approaches, as well as complex mechanistic models based on thermodynamic knowledge of biomolecular behavior at different temperatures, have been developed. Even though underlying biological mechanisms and mathematical models have been well-described, temperature as a control variable is only scarcely applied in bioprocess engineering, and as a conclusion, an exploitation strategy merging both in context has not yet been established. In this review, the most important models for physiological, biochemical, and physical properties governed by temperature are presented and discussed, along with application perspectives.
    [Show full text]
  • The Evolution of Endothermy and Its Diversity in Mammals and Birds Author(S): Gordon C
    Division of Comparative Physiology and Biochemistry, Society for Integrative and Comparative Biology The Evolution of Endothermy and Its Diversity in Mammals and Birds Author(s): Gordon C. Grigg, Lyn A. Beard, and Michael L. Augee Source: Physiological and Biochemical Zoology, Vol. 77, No. 6, Sixth International Congress of Comparative Physiology and Biochemistry Symposium Papers: Evolution and Advantages of Endothermy (November/December 2004), pp. 982-997 Published by: The University of Chicago Press. Sponsored by the Division of Comparative Physiology and Biochemistry, Society for Integrative and Comparative Biology Stable URL: http://www.jstor.org/stable/10.1086/425188 . Accessed: 08/11/2015 23:11 Your use of the JSTOR archive indicates your acceptance of the Terms & Conditions of Use, available at . http://www.jstor.org/page/info/about/policies/terms.jsp . JSTOR is a not-for-profit service that helps scholars, researchers, and students discover, use, and build upon a wide range of content in a trusted digital archive. We use information technology and tools to increase productivity and facilitate new forms of scholarship. For more information about JSTOR, please contact [email protected]. The University of Chicago Press and Division of Comparative Physiology and Biochemistry, Society for Integrative and Comparative Biology are collaborating with JSTOR to digitize, preserve and extend access to Physiological and Biochemical Zoology. http://www.jstor.org This content downloaded from 23.235.32.0 on Sun, 8 Nov 2015 23:11:10 PM All use subject to JSTOR Terms and Conditions 982 The Evolution of Endothermy and Its Diversity in Mammals and Birds Gordon C. Grigg1 thermy, including the capacity for homeothermic endothermy Lyn A.
    [Show full text]
  • Thermal Relations 10
    CHAPTER Thermal Relations 10 s this bumblebee flies from one flower cluster to another to collect nectar and pollen, temperature matters for the bee in two crucial ways. First, the temperature of the bumblebee’s flight muscles de- A termines how much power they can generate. The flight muscles must be at least as warm as about 35°C to produce enough power to keep the bee airborne; if the muscles are cooler, the bee cannot fly. The second principal way in which temperature matters is that for a bumblebee to maintain its flight muscles at a high enough temperature to fly, the bee must expend food energy to generate heat to warm the muscles. In a warm environment, all the heat required may be produced simply as a by-product of flight. In a cool environment, however, as a bumblebee moves from flower cluster to flower cluster—stopping at each to feed—it must expend energy at an elevated rate even during the intervals when it is not flying, either to keep its flight muscles continually at a high enough temperature to fly or to rewarm the flight muscles to flight temperature if they cool while feeding. Assuming that the flight muscles must be at 35°C for flight, they must be warmed to 10°C above air temperature if the air is at 25°C, but to 30°C above air temperature if the air is at 5°C. Thus, as the air becomes cooler, a bee must expend food energy at a higher and higher rate to generate heat to warm its flight muscles to flight temperature, meaning it must collect food at a higher and higher rate.
    [Show full text]
  • AUTHOR Stevenson, R. D
    DOCUMENT RESUME ED 195 429 SE 033 590 AUTHOR Stevenson, R.D. TITLE Animal Thermoregulation and the Operative Environmental (Equivalent) Temperature. Physical Processes in Terrestrial and Aquatic Ecosystems, Transport Process. INSTITUTION Washington Univ., Seattle. Center for Quantitative Science in Forestry, Fisheries and Wildlife. SPONS AGENCY National Science Foundation, Washington, D.C. PUB DATE Jun 79 GRANT NSF-GZ-2980: NSF-SED74-17696 NOTE 64p.: For related documents, see SE 033 581-597. EDFS PRICE MF01/PC03 Plus Postage. DESCRIPTORS *Biology: College Science: Computer Assisted Instruction: Computer Programs: Ecology: *Environmental Education: Heat: Higher Education: Instructional Materials: *Interdisciplinary Approach: Mathematical Applications: *Physiology: Science Education: Science Tnstruction: *Thermal Environment IDENTIFIERS *Thermoregulation ABSTRACT These materials were designed to be used by life sci,Ince students for instruction in the application of physical theory to ecosystem operation. Most modules contain computer programs which are built around a particular application of a physical process. Thermoregulation is defined as the ability of an organism to modify its body temperature. This module emphasizes animal thermoregulation from an ecological point of view and develops the concept of the operative environmental temperature, a technique which integrates the effects of all heat transfer processes into one number. Historical developments in the study of animal thermoregulation are reviewed and an attempt is made to illustrate how a quantitative knowledge of heat transfer processes can be used to clarify the adaptive significance of animal morphology, behavior, and physiology. A problem set illustrates and extends ideas developed in the text. (Author/CS1 *********************************************************************** Reproductions supplied by EDRS are the best that can be made from the original document.
    [Show full text]
  • The External Environment
    Chapter 2 The .xternal .n8ironment CHAPTER 2 THE EXTERNAL ENVIRONMENT Prepared for the Course Team by Patricia Ash 0.1 Introduction Before we can understand the phenotypic and genotypic adaptations of vertebrates for life in their environment we need to examine the physical characteristics of the environment. Vertebrates live both on land and in water so we need to study the thermal characteristics of each, and to understand the processes of heat exchange. We are especially interested in temperature because the rates of all metabolic processes are temperature dependent. As temperature decreases, enzyme activity usually decreases and so do the rates of most other chemical reactions. The highest temperature available for vertebrate metabolism is restricted by the risk of denaturation of proteins and disruption of membrane structure at temperatures greater than about 38°C. The body temperature of vertebrates represents a balance between heat gained either from metabolism or the environment and heat lost to the environment. Animal physiologists are therefore glucose particularly interested in thermal exchange. Metabolism CYTOSOL glycerol generates heat, and in endotherms this heat is used to maintain body temperature. Therefore, factors affecting metabolic rate alanine pyruvate have been much studied. Until recently most of this research was carried out in a laboratory, but techniques have been developed and refined that enable measurements of body acetyl CoA fatty acid temperature and metabolic rate to be carried out on animals in the field. aspartate 4C 6C MITOCHONDRIAL Nearly all vertebrates depend on oxygen for maintenance MATRIX of aerobic metabolism, and hence generation of ATP, in tissues. TCA cycle The highest yields of ATP per mole of substrate, are obtained glutamate from aerobic catabolism of fuel molecules.
    [Show full text]
  • Characterization of the Heart Transcriptome of the White Shark (Carcharodon Carcharias) Richards Et Al
    Photo courtesy of Michael Scholl - Save Our Seas Foundation Characterization of the heart transcriptome of the white shark (Carcharodon carcharias) Richards et al. Richards et al. BMC Genomics 2013, 14:697 http://www.biomedcentral.com/1471-2164/14/697 Richards et al. BMC Genomics 2013, 14:697 http://www.biomedcentral.com/1471-2164/14/697 RESEARCH ARTICLE Open Access Characterization of the heart transcriptome of the white shark (Carcharodon carcharias) Vincent P Richards1, Haruo Suzuki1,3, Michael J Stanhope1* and Mahmood S Shivji2* Abstract Background: The white shark (Carcharodon carcharias) is a globally distributed, apex predator possessing physical, physiological, and behavioral traits that have garnered it significant public attention. In addition to interest in the genetic basis of its form and function, as a representative of the oldest extant jawed vertebrate lineage, white sharks are also of conservation concern due to their small population size and threat from overfishing. Despite this, surprisingly little is known about the biology of white sharks, and genomic resources are unavailable. To address this deficit, we combined Roche-454 and Illumina sequencing technologies to characterize the first transciptome of any tissue for this species. Results: From white shark heart cDNA we generated 665,399 Roche 454 reads (median length 387-bp) that were assembled into 141,626 contigs (mean length 503-bp). We also generated 78,566,588 Illumina reads, which we aligned to the 454 contigs producing 105,014 454/Illumina consensus sequences. To these, we added 3,432 non-singleton 454 contigs. By comparing these sequences to the UniProtKB/Swiss-Prot database we were able to annotate 21,019 translated open reading frames (ORFs) of ≥ 20 amino acids.
    [Show full text]
  • Climate Change and Agriculture in the United States: Effects and Adaptation
    Climate Change and Agriculture in the United States: Effects and Adaptation USDA Technical Bulletin 1935 Climate Change and Agriculture in the United States: Effects and Adaptation This document may be cited as: Walthall, C.L., J. Hatfield, P. Backlund, L. Lengnick, E. Marshall, M. Walsh, S. Adkins, M. Aillery, E.A. Ainsworth, C. Ammann, C.J. Anderson, I. Bartomeus, L.H. Baumgard, F. Booker, B. Bradley, D.M. Blumenthal, J. Bunce, K. Burkey, S.M. Dabney, J.A. Delgado, J. Dukes, A. Funk, K. Garrett, M. Glenn, D.A. Grantz, D. Goodrich, S. Hu, R.C. Izaurralde, R.A.C. Jones, S-H. Kim, A.D.B. Leaky, K. Lewers, T.L. Mader, A. McClung, J. Morgan, D.J. Muth, M. Nearing, D.M. Oosterhuis, D. Ort, C. Parmesan, W.T. Pettigrew, W. Polley, R. Rader, C. Rice, M. Rivington, E. Rosskopf, W.A. Salas, L.E. Sollenberger, R. Srygley, C. Stöckle, E.S. Takle, D. Timlin, J.W. White, R. Winfree, L. Wright-Morton, L.H. Ziska. 2012. Climate Change and Agriculture in the United States: Effects and Adaptation. USDA Technical Bulletin 1935. Washington, DC. 186 pages. This document was produced as part of of a collaboration between the U.S. Department of Agriculture, the University Corporation for Atmospheric Research, and the National Center for Atmospheric Research under USDA cooperative agreement 58-0111-6-005. NCAR’s primary sponsor is the National Science Foundation. Images courtesy of USDA and UCAR. This report is available on the Web at: http://www.usda.gov/oce/climate_change/effects.htm Printed copies may be purchased from the National Technical Information Service.
    [Show full text]
  • A Mechanistic Approach for Modeling Temperature-Dependent Consumer-Resource Dynamics
    vol. 166, no. 2 the american naturalist august 2005 ൴ A Mechanistic Approach for Modeling Temperature-Dependent Consumer-Resource Dynamics David A. Vasseur1,2,* and Kevin S. McCann2,† 1. Biology Department, McGill University, 1205 Avenue Docteur Many of the characteristics that researchers use to describe Penfield, Montre´al, Que´bec H3A 1B1, Canada; biological populations and communities, such as their 2. Department of Zoology, University of Guelph, Guelph, Ontario density, distribution, diversity, and dynamics, rely on en- N1G 2W1, Canada vironmental temperature. Recent climate projections sug- Submitted September 8, 2004; Accepted April 13, 2005; gest that unprecedented warming will occur in many of Electronically published May 17, 2005 the earth’s environments during the current century (Houghton et al. 2001) with uncertain impacts on bio- Online enhancement: appendix. logical populations and communities. Predictive models often consider that populations persist within a range of climatic conditions known as their climate envelope. Cur- rent climate projections indicate that envelopes and their abstract: Paramount to our ability to manage and protect bio- inhabitant populations will move to higher latitudes in logical communities from impending changes in the environment is response to changing conditions because of local specia- an understanding of how communities will respond. General math- tion and extinction events at the range extrema or changes ematical models of community dynamics are often too simplistic to in migratory routes (Parmesan et al. 1999). Although evi- accurately describe this response, partly to retain mathematical trac- dence for such shifts in nature is accumulating (Parmesan tability and partly for the lack of biologically pleasing functions rep- et al.
    [Show full text]