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The 2014 Golden Gate National Parks Bioblitz - Data Management and the Event Species List Achieving a Quality Dataset from a Large Scale Event
National Park Service U.S. Department of the Interior Natural Resource Stewardship and Science The 2014 Golden Gate National Parks BioBlitz - Data Management and the Event Species List Achieving a Quality Dataset from a Large Scale Event Natural Resource Report NPS/GOGA/NRR—2016/1147 ON THIS PAGE Photograph of BioBlitz participants conducting data entry into iNaturalist. Photograph courtesy of the National Park Service. ON THE COVER Photograph of BioBlitz participants collecting aquatic species data in the Presidio of San Francisco. Photograph courtesy of National Park Service. The 2014 Golden Gate National Parks BioBlitz - Data Management and the Event Species List Achieving a Quality Dataset from a Large Scale Event Natural Resource Report NPS/GOGA/NRR—2016/1147 Elizabeth Edson1, Michelle O’Herron1, Alison Forrestel2, Daniel George3 1Golden Gate Parks Conservancy Building 201 Fort Mason San Francisco, CA 94129 2National Park Service. Golden Gate National Recreation Area Fort Cronkhite, Bldg. 1061 Sausalito, CA 94965 3National Park Service. San Francisco Bay Area Network Inventory & Monitoring Program Manager Fort Cronkhite, Bldg. 1063 Sausalito, CA 94965 March 2016 U.S. Department of the Interior National Park Service Natural Resource Stewardship and Science Fort Collins, Colorado The National Park Service, Natural Resource Stewardship and Science office in Fort Collins, Colorado, publishes a range of reports that address natural resource topics. These reports are of interest and applicability to a broad audience in the National Park Service and others in natural resource management, including scientists, conservation and environmental constituencies, and the public. The Natural Resource Report Series is used to disseminate comprehensive information and analysis about natural resources and related topics concerning lands managed by the National Park Service. -
AMATOXIN MUSHROOM POISONING in NORTH AMERICA 2015-2016 by Michael W
VOLUME 57: 4 JULY-AUGUST 2017 www.namyco.org AMATOXIN MUSHROOM POISONING IN NORTH AMERICA 2015-2016 By Michael W. Beug: Chair, NAMA Toxicology Committee Assessing the degree of amatoxin mushroom poisoning in North America is very challenging. Understanding the potential for various treatment practices is even more daunting. Although I have been studying mushroom poisoning for 45 years now, my own views on potential best treatment practices are still evolving. While my training in enzyme kinetics helps me understand the literature about amatoxin poisoning treatments, my lack of medical training limits me. Fortunately, critical comments from six different medical doctors have been incorporated in this article. All six, each concerned about different aspects in early drafts, returned me to the peer reviewed scientific literature for additional reading. There remains no known specific antidote for amatoxin poisoning. There have not been any gold standard double-blind placebo controlled studies. There never can be. When dealing with a potentially deadly poisoning (where in many non-western countries the amatoxin fatality rate exceeds 50%) treating of half of all poisoning patients with a placebo would be unethical. Using amatoxins on large animals to test new treatments (theoretically a great alternative) has ethical constraints on the experimental design that would most likely obscure the answers researchers sought. We must thus make our best judgement based on analysis of past cases. Although that number is now large enough that we can make some good assumptions, differences of interpretation will continue. Nonetheless, we may be on the cusp of reaching some agreement. Towards that end, I have contacted several Poison Centers and NAMA will be working with the Centers for Disease Control (CDC). -
The Ectomycorrhizal Fungus Amanita Phalloides Was Introduced and Is
Molecular Ecology (2009) doi: 10.1111/j.1365-294X.2008.04030.x TheBlackwell Publishing Ltd ectomycorrhizal fungus Amanita phalloides was introduced and is expanding its range on the west coast of North America ANNE PRINGLE,* RACHEL I. ADAMS,† HUGH B. CROSS* and THOMAS D. BRUNS‡ *Department of Organismic and Evolutionary Biology, Biological Laboratories, 16 Divinity Avenue, Harvard University, Cambridge, MA 02138, USA, †Department of Biological Sciences, Gilbert Hall, Stanford University, Stanford, CA 94305-5020, USA, ‡Department of Plant and Microbial Biology, 111 Koshland Hall, University of California, Berkeley, CA 94720, USA Abstract The deadly poisonous Amanita phalloides is common along the west coast of North America. Death cap mushrooms are especially abundant in habitats around the San Francisco Bay, California, but the species grows as far south as Los Angeles County and north to Vancouver Island, Canada. At different times, various authors have considered the species as either native or introduced, and the question of whether A. phalloides is an invasive species remains unanswered. We developed four novel loci and used these in combination with the EF1α and IGS loci to explore the phylogeography of the species. The data provide strong evidence for a European origin of North American populations. Genetic diversity is generally greater in European vs. North American populations, suggestive of a genetic bottleneck; polymorphic sites of at least two loci are only polymorphic within Europe although the number of individuals sampled from Europe was half the number sampled from North America. Endemic alleles are not a feature of North American populations, although alleles unique to different parts of Europe were common and were discovered in Scandinavian, mainland French, and Corsican individuals. -
Los Hongos Agaricales De Las Áreas De Encino Del Estado De Baja California, México Nahara Ayala-Sánchez Universidad Autónoma De Baja California
University of Nebraska - Lincoln DigitalCommons@University of Nebraska - Lincoln Estudios en Biodiversidad Parasitology, Harold W. Manter Laboratory of 2015 Los hongos Agaricales de las áreas de encino del estado de Baja California, México Nahara Ayala-Sánchez Universidad Autónoma de Baja California Irma E. Soria-Mercado Universidad Autónoma de Baja California Leticia Romero-Bautista Universidad Autónoma del Estado de Hidalgo Maritza López-Herrera Universidad Autónoma del Estado de Hidalgo Roxana Rico-Mora Universidad Autónoma de Baja California See next page for additional authors Follow this and additional works at: http://digitalcommons.unl.edu/biodiversidad Part of the Biodiversity Commons, Botany Commons, and the Terrestrial and Aquatic Ecology Commons Ayala-Sánchez, Nahara; Soria-Mercado, Irma E.; Romero-Bautista, Leticia; López-Herrera, Maritza; Rico-Mora, Roxana; and Portillo- López, Amelia, "Los hongos Agaricales de las áreas de encino del estado de Baja California, México" (2015). Estudios en Biodiversidad. 19. http://digitalcommons.unl.edu/biodiversidad/19 This Article is brought to you for free and open access by the Parasitology, Harold W. Manter Laboratory of at DigitalCommons@University of Nebraska - Lincoln. It has been accepted for inclusion in Estudios en Biodiversidad by an authorized administrator of DigitalCommons@University of Nebraska - Lincoln. Authors Nahara Ayala-Sánchez, Irma E. Soria-Mercado, Leticia Romero-Bautista, Maritza López-Herrera, Roxana Rico-Mora, and Amelia Portillo-López This article is available at DigitalCommons@University of Nebraska - Lincoln: http://digitalcommons.unl.edu/biodiversidad/19 Los hongos Agaricales de las áreas de encino del estado de Baja California, México Nahara Ayala-Sánchez, Irma E. Soria-Mercado, Leticia Romero-Bautista, Maritza López-Herrera, Roxana Rico-Mora, y Amelia Portillo-López Resumen Se realizó una recopilación de las especies de hongos del orden Agaricales (regionalmente conocido como “agaricoides”) de los bosques Quercus spp. -
Australia's Fungi Mapping Scheme
November 2008 AUSTRALIA’S FUNGI MAPPING SCHEME Inside this Edition: th News from the Fungimap Co-ordinator by This is our 5 Fungimap Conference and we Lee Speedy..................................................1 have organised a great programme of Contacting Fungimap ..................................2 speakers from across Australia and covering From the Editor, Instructions for authors ....3 very diverse fungi topics. In this newsletter Collating information on fungi in Australian we have included a Questionnaire, to policy & strategy documents by T May …..3 discover which Workshop topics you would Yellow/orange Amanitas by Sapphire most like to see (your Top 5 topics). Please McMullan-Fisher……………………...…..4 return this along with your Registration form Mycoacia subceracea by Barbara Paulus ....7 and we will adapt our list of Workshops New additions in W.A.'s Flora Conservation where possible. codes by Neale Bougher..............................8 New Fungimap target species....................13 At previous Conferences, transportation and Fungimap survey on Kangaroo Island by distribution of microscopes have been Paul George ..............................................13 challenging and so we have decided to add a Fungi-mapping in Ivanhoe, Melbourne by truly unique one day Masterclass with Robert Bender ..........................................15 microscopes in Sydney, to run at the UNSW, Phallus merulinus in the top end by Matt just after our Conference. This will be on the Barrett & Ben Stuckey ..............................16 topic of Disc Fungi and led by Dr. Peter Exhibition Review: In Plain View by Sarah Johnston from New Zealand. Places for this Lloyd .........................................................16 workshop will be strictly limited. Fungal News: PUBF 2008.........................17 Fungal News: SA, SEQ - QMS.................18 In early October, I accompanied Dr. -
A MYCOLEGIUM of LITERATURE the New North America Mushroom Species of 2015 Else C
Cortinarius vanduzerensis, from the type locality in Oregon, unmistakable with its and the species, growing with slimy dark brown cap, Pseudotsuga, Tsuga and Abies in and slimy lilac-purple Oregon, Washington, and British stem, right? Alas, it is Columbia has been described now postulated that this as Cortinarius seidliae. Images species is only known courtesy of M. G. Wood and N. Siegel. A MYCOLEGIUM OF LITERATURE The new North America mushroom species of 2015 Else C. Vellinga round 30 new North American species of macrofungi they are in general very difficult to recognize anyway; without saw the light in 2015 – leaving 2014 as the top year pictures for comparison it is just impossible. with 58 species. In 2015, 14 new Cortinarius species, To speed up the description of new species, several Aan Entoloma, one wax cap, two Russulas, one bolete, several journals now offer the opportunity to publish single species polypores, two Craterellus species, one Geastrum, an descriptions as part of a much bigger article in which many Auricularia, and a number of Tremella species were presented different authors each describe only one or a few new species. as new, plus two Otidea species representing the Ascomycota. Several of the new Cortinarius and Russula species were As in 2014, many of the new taxa were published in Index published as part of these big community efforts. For the Fungorum, without any supporting illustrations and without individual author this is advantageous, as there will be more phylogenetic trees showing the placement of the new species. citations of the whole article than for a single species article. -
Amatoxin Mushroom Poisoning in North America 2015-2016 by Michael W
Amatoxin Mushroom Poisoning in North America 2015-2016 By Michael W. Beug PhD Chair NAMA Toxicology Committee Assessing the degree of amatoxin mushroom poisoning in North America is very challenging. Understanding the potential for various treatment practices is even more daunting. Although I have been studying mushroom poisoning for 45 years now, my own views on potential best treatment practices are still evolving. While my training in enzyme kinetics helps me understand the literature about amatoxin poisoning treatments, my lack of medical training limits me. Fortunately, critical comments from six different medical doctors have been incorporated in this article. All six, each concerned about different aspects in early drafts, returned me to the peer reviewed scientific literature for additional reading. There remains no known specific antidote for amatoxin poisoning. There have not been any gold standard double-blind placebo controlled studies. There never can be. When dealing with a potentially deadly poisoning (where in many non-western countries the amatoxin fatality rate exceeds 50%) treating of half of all poisoning patients with a placebo would be unethical. Using amatoxins on large animals to test new treatments (theoretically a great alternative) has ethical constraints on the experimental design that would most likely obscure the answers researchers sought. We must thus make our best judgement based on analysis of past cases. Although that number is now large enough that we can make some good assumptions, differences of interpretation will continue. Nonetheless, we may be on the cusp of reaching some agreement. Towards that end, I have contacted several Poison Centers and NAMA will be working with the Center for Disease Control (CDC). -
Species Diversity of the Genus Amanita Dill. Ex Boehm. (1760) in Chu Yang Sin National Park, Daklak, Vietnam
Available online www.jsaer.com Journal of Scientific and Engineering Research, 2018, 5(4):53-63 ISSN: 2394-2630 Research Article CODEN(USA): JSERBR Species Diversity of the Genus Amanita Dill. Ex Boehm. (1760) in Chu Yang Sin National Park, Daklak, Vietnam T.T.T. Hien1, L.B. Dung2, N.P.D. Nguyen3, T.D. Khanh4* 1Middle School Teachers Nursery Daklak, Buon Ma Thuat, Vietnam 2Dalat Univesity, Vietnam, 3Tay Nguyen University, Vietnam; 4Agricultural Genetics Insitute, Hanoi, Vietnam Abstract The genus Amanita is one of the genera which is diverse in shapes, colors, species and biological characteristics. The species are valuable in medicine and nutritious for human health. However, there are some species belonging to this genus are toxic, especially the species belonging to Amanita Dill. Ex Boehm. The investigation of the species was carried out in Chu Yang Sin national park. The results showed that 15 species of Amanita Dill. Ex Boehm were recorded: (1) Amanita abrupta; (2) Amanita amanitoides; (3) Amanita caesareoides; (4) Amanita caesarea; (5) Amanita cokeri ; (6) Amanita concentrica; (7) Amanita flavoconia; (8) Amanita levistriata; (9) Amanita multisquamosa; (10) Amanita pantherina; (11) Amanita phalloides; (12) Amanita pilosella, (13) Amanita solitaria; (14) Amanita subcokeri; (15) Amanit vaginata .Within 15 species were identified, eight species were newly added to the list of predominant fungi in the Central Highlands of Vietnam included: Amanita abrupta, Amanita amanitoides, Amanita concentrica, Amanita flavoconia, Amanita levistriata, Amanita multisquamosa, Amanita pilosella, Amanita solitaria. Most of the collected Amanita species showed bright colors with a base or fungal rings. They live in areas with high moisture (>85%), at altitude from 800 – 1200 m above sea level, annually occur from June to November and are saprotrophic on soil, under tree shades, especially coniferous, semi-evergreen trees and on greensward or shrubs. -
Testing Spore Amyloidity in Agaricales Under Light Microscope: the Case Study of Tricholoma Alfredo Vizzini1*, Giovanni Consiglio2 and Ledo Setti3
Vizzini et al. IMA Fungus (2020) 11:24 https://doi.org/10.1186/s43008-020-00046-8 IMA Fungus RESEARCH Open Access Testing spore amyloidity in Agaricales under light microscope: the case study of Tricholoma Alfredo Vizzini1*, Giovanni Consiglio2 and Ledo Setti3 Abstract Although species of the genus Tricholoma are currently considered to produce inamyloid spores, a novel standardized method to test sporal amyloidity (which involves heating the sample in Melzer’s reagent) showed evidence that in the tested species of this genus, which belong in all 10 sections currently recognized from Europe, the spores are amyloid. In two species, T. josserandii and T. terreum, the spores are also partly dextrinoid. This result provides strong indication that a positive reaction of the spores in Melzer’s reagent could be a character shared by all genera in Tricholomataceae s. str. Keywords: Agaricomycetes, Basidiomycota, Iodine, Melzer’s reagent, nrITS sequences, Pre-heating, Taxonomy of Tricholomataceae Introduction of the starch–iodine interaction is extremely complex It has been known for about 150 years that some asco- and still remains imperfectly known (Bluhm and Zugen- mycete and basidiomycete sporomata may contain maier 1981; Immel and Lichtenthaler 2000; Shen et al. elements which stain grey to blue-black with iodine- 2013; Du et al. 2014; Okuda et al. 2020). containing solutions. Such a staining was termed amyl- An overview of the historical use of Melzer’s was pro- oid reaction, sometimes written as I+ or J+ (the term vided by Leonard (2006). Iodine was used in Mycology “amyloid” being derived from the Latin amyloideus, i.e. -
Toxic Fungi of Western North America
Toxic Fungi of Western North America by Thomas J. Duffy, MD Published by MykoWeb (www.mykoweb.com) March, 2008 (Web) August, 2008 (PDF) 2 Toxic Fungi of Western North America Copyright © 2008 by Thomas J. Duffy & Michael G. Wood Toxic Fungi of Western North America 3 Contents Introductory Material ........................................................................................... 7 Dedication ............................................................................................................... 7 Preface .................................................................................................................... 7 Acknowledgements ................................................................................................. 7 An Introduction to Mushrooms & Mushroom Poisoning .............................. 9 Introduction and collection of specimens .............................................................. 9 General overview of mushroom poisonings ......................................................... 10 Ecology and general anatomy of fungi ................................................................ 11 Description and habitat of Amanita phalloides and Amanita ocreata .............. 14 History of Amanita ocreata and Amanita phalloides in the West ..................... 18 The classical history of Amanita phalloides and related species ....................... 20 Mushroom poisoning case registry ...................................................................... 21 “Look-Alike” mushrooms ..................................................................................... -
New Developments in Amatoxin Poisoning
New Developments in Amatoxin Poisoning ACMT Annual Scientific Meeting San Juan, PR March 15, 2013 Disclosure S Todd Mitchell MD,MPH Principal Investigator: Prevention and Treatment of Amatoxin Induced Hepatic Failure With Intravenous Silibinin ( Legalon® SIL): An Open Multicenter Clinical Trial Consultant: Madaus-Rottapharm Amatoxin Poisoning: Overview • 95%+ of all fatal mushroom poisonings worldwide are due to amatoxin containing species. • 50-100 Deaths per year in Europe is typical. • Growing Problem in North America, especially Northern Califoriia USA 1976-2005: 126 Reported Cases 2006: 48 Reported Cases, 4 Deaths Summer 2008: 2 Deaths on East Coast September/October 2012: 2 deaths, 1 transplant among 15 total cases on the East Coast. Mexico 2005 & 2006: 19 Reported Deaths. Countless more in SE Asia, Indian Sub-Continent, South Africa Assam, India March 2008: 20 Deaths Swat, Pakistan 2006: Watsonville September 2006 • 57 yo former ER nurse, electrical contractor ingests 8 mushrooms from his property at 1800 on September 8. • Onset of sx ~0200. • Mushrooms identified as Amanita Phalloides by local expert amateur mycologist ~1500. • Presented to ER 24 hours post ingestion: BUN 37, Creat 2.0, Hgb 20.2, Hct 60.5, ALT 96. • Transfer to UCSF 9/10. INR 2.2, ALT 869 after Rx with hydration, antiemetics, repeated doses of charcoal, IV NAC, and IV PEN G. • 72 Hours: INR 4.5, ALT 2274, Bil 4.0. • Liver Transplant 9/14. 2007 Santa Cruz Cohort • EM age 82. ALT 12224, INR 5.4, Factor V 9% @ 72 hours. ALT 3570, INR 1.7, Factor V 49% @ 144 hours. Died from anuric renal failure 1/11. -
Phd. Thesis Sana Jabeen.Pdf
ECTOMYCORRHIZAL FUNGAL COMMUNITIES ASSOCIATED WITH HIMALAYAN CEDAR FROM PAKISTAN A dissertation submitted to the University of the Punjab in partial fulfillment of the requirements for the degree of DOCTOR OF PHILOSOPHY in BOTANY by SANA JABEEN DEPARTMENT OF BOTANY UNIVERSITY OF THE PUNJAB LAHORE, PAKISTAN JUNE 2016 TABLE OF CONTENTS CONTENTS PAGE NO. Summary i Dedication iii Acknowledgements iv CHAPTER 1 Introduction 1 CHAPTER 2 Literature review 5 Aims and objectives 11 CHAPTER 3 Materials and methods 12 3.1. Sampling site description 12 3.2. Sampling strategy 14 3.3. Sampling of sporocarps 14 3.4. Sampling and preservation of fruit bodies 14 3.5. Morphological studies of fruit bodies 14 3.6. Sampling of morphotypes 15 3.7. Soil sampling and analysis 15 3.8. Cleaning, morphotyping and storage of ectomycorrhizae 15 3.9. Morphological studies of ectomycorrhizae 16 3.10. Molecular studies 16 3.10.1. DNA extraction 16 3.10.2. Polymerase chain reaction (PCR) 17 3.10.3. Sequence assembly and data mining 18 3.10.4. Multiple alignments and phylogenetic analysis 18 3.11. Climatic data collection 19 3.12. Statistical analysis 19 CHAPTER 4 Results 22 4.1. Characterization of above ground ectomycorrhizal fungi 22 4.2. Identification of ectomycorrhizal host 184 4.3. Characterization of non ectomycorrhizal fruit bodies 186 4.4. Characterization of saprobic fungi found from fruit bodies 188 4.5. Characterization of below ground ectomycorrhizal fungi 189 4.6. Characterization of below ground non ectomycorrhizal fungi 193 4.7. Identification of host taxa from ectomycorrhizal morphotypes 195 4.8.