Effects of Antidepressants on the Conformation of Phospholipid Headgroups Studied by Solid-State NMR

Total Page:16

File Type:pdf, Size:1020Kb

Effects of Antidepressants on the Conformation of Phospholipid Headgroups Studied by Solid-State NMR MAGNETIC RESONANCE IN CHEMISTRY Magn. Reson. Chem. 2004; 42: 105–114 Published online in Wiley InterScience (www.interscience.wiley.com). DOI: 10.1002/mrc.1327 Effects of antidepressants on the conformation of phospholipid headgroups studied by solid-state NMR Jose S. Santos,1† Dong-Kuk Lee1,2 and Ayyalusamy Ramamoorthy1,2,3∗ 1 Biophysics Research Division, University of Michigan, Ann Arbor, Michigan 48109-1055, USA 2 Department of Chemistry, University of Michigan, Ann Arbor, Michigan 48109-1055, USA 3 Macromolecular Science and Engineering, University of Michigan, Ann Arbor, Michigan 48109-1055, USA Received 10 June 2003; Revised 25 August 2003; Accepted 1 September 2003 The effect of tricyclic antidepressants (TCA) on phospholipid bilayer structure and dynamics was studied to provide insight into the mechanism of TCA-induced intracellular accumulation of lipids (known as lipidosis). Specifically we asked if the lipid–TCA interaction was TCA or lipid specific and if such physical interactions could contribute to lipidosis. These interactions were probed in multilamellar vesicles and mechanically oriented bilayers of mixed phosphatidylcholine–phosphatidylglycerol (PC–PG) phospholipids using 31Pand14N solid-state NMR techniques. Changes in bilayer architecture in the presence of TCAs were observed to be dependent on the TCA’s effective charge and steric constraints. The results further show that desipramine and imipramine evoke distinguishable changes on the membrane surface, particularly on the headgroup order, conformation and dynamics of phospholipids. Desipramine increases the disorder of the choline site at the phosphatidylcholine headgroup while leaving the conformation and dynamics of the phosphate region largely unchanged. Incorporation of imipramine changes both lipid headgroup conformation and dynamics. Our results suggest that a correlation between TCA-induced changes in bilayer architecture and the ability of these compounds to induce lipidosis is, however, not straightforward as imipramine was shown to induce more dramatic changes in bilayer conformation and dynamics than desipramine. The use of 14N as a probe was instrumental in arriving at the presented conclusions. Copyright 2004 John Wiley & Sons, Ltd. KEYWORDS: NMR; 14NNMR;31P NMR; desipramine; imipramine; iminodibenzyl; phospholipid; antidepressant; tricyclic antidepressants INTRODUCTION renders the lipid unsuitable for degradation, or with the phospholipase thereby inactivating the enzyme.11 Since the The class of tricyclic antidepressants, which includes process of sequestering peripheral membrane and cytosolic imipramine and its metabolized product desipramine proteins to the membrane has been observed to be initially (Fig. 1), is known to interact strongly with the lipid bilayer.1–5 driven by an electrostatic interaction between the lipid head- The ‘amine hypothesis’ suggests that the pharmacological groups and protein,15–18 it is plausible that the introduction effect of these drugs is to block the re-uptake of neuro- of the charged TCA drug changes the electrostatic profile of transmitters at the nerve synapses.6 It is also known that the lipid bilayer and therefore may contribute to inhibit the the incorporation of these compounds into lipid bilayers phospholipase–membrane contact. In this conceptual frame, leads to intracellular accumulation of various phospholipids, it is important to ask how the lipid bilayer structure and a process known as lipidosis.7–12 Tricyclic antidepressant dynamics change at the atomic level upon the introduction (TCA)-induced lipidosis has been linked to the ability of these of positively charged amphiphiles. Specifically, it would be compounds to inhibit phospholipases which are responsible valuable to test if there is a correlation between the different for phospholipid degradation.6,13,14 However, the mecha- observed physiological effects of TCA homologues, such as nistic connection between TCA–lipid interaction and phos- desipramine and imipramine, and spectroscopically observ- pholipidosis remains puzzling. It is unclear whether a TCA able changes in the electrostatic profile of the membrane interacts directly with the phospholipids and consequently surface. The introduction of any type of inclusion, here defined Ł Correspondence to: Ayyalusamy Ramamoorthy, Biophysics as any non-lipid molecule, into a lipid bilayer rearranges Research Division, University of Michigan, Ann Arbor, Michigan 48109-1055, USA. E-mail: [email protected] the number and type of interactions that stabilize the bilayer †Present address: Division of Biological Sciences, Section of structure. Probing these types of interactions in a quanti- Neurobiology, University of California at San Diego, La Jolla, tative manner has proven difficult through spectroscopic California 92093-0366, USA. Contract/grant sponsor: National Science Foundation. methods. The work of Pasenkiewicz-Gierula and co-workers Contract/grant sponsor: Petroleum Research Fund. using molecular simulations of lipid bilayers to investigate Copyright 2004 John Wiley & Sons, Ltd. 106 J. S. Santos, D.-K. Lee and A. Ramamoorthy O22 H C218 C216 C214 C212 CC28 C26 C24 C22 A N C217 C215 C213 C211 C29 C27 C25 C23 C21 O21 O13 C2 O11 O C A 12 12 C13 C 1 P C11 H3C C H3C 3 + + N BCHHN + H N CH O O γ 3 31 14 C14 C C34 C32 C15 C C C C38 36 C316 314 312 310 C β C C C33 31 α C C39 37 35 C315 C313 311 6 4 O 3 N 7 32 5 N 8 2 O22 C218 C216 C214 C212 CC28 C26 C24 C22 1 9 C217 C215 C213 C211 C29 C27 C25 C23 C21 11 10 H O21 Figure 1. Structures of TCA drugs: (A) iminodibenzyl; O13 O14 (B) desipramine; (C) imipramine. C O 2 11 O12 C12 B C 1 P C11 C13 C3 O15 these types of forces has recently produced a wealth of O31 O H 19,20 14 information. These studies showed that there are two C C34 C32 C C38 36 C316 C314 C312 310 C C C types of short-distance interactions that are predicted to C C37 35 33 31 C C313 C311 39 occur between phosphatidylcholine (PC) headgroups. These 315 O32 interactions are water-mediated hydrogen bonds and charge association (charge pairs), each of which can be inter- or Figure 2. Structures of (A) 1-palmitoyl-2-oleoyl-sn-glycero- intramolecular.19,21,22 Such interactions are responsible for 3-phosphatidylcholine (POPC) and (B) 1-palmitoyl-2-oleoyl-sn- the formation of an extended network among PC head- glycero-3-phosphatidylglycerol (POPG). The phospholipid groups linking 98% PC in a membrane.19 The sites of these atom numbering scheme is identical with that used by 19 interactions are the positively charged nitrogen atom in the Pasenkiewicz-Gierula et al. choline headgroup, the negatively charged non-ester phos- phate oxygens (see O13 in Fig. 2) and the carbonyl oxygens In this study, the interaction of TCAs with mechani- (see O22 and O32 in Fig. 2). cally oriented lipid bilayers and multilamellar lipid vesicles Solid-state NMR techniques on naturally abundant NMR- composed of a mixture of zwitterionic (PC) and anionic active nuclei of 31Pand14N (100.0 and 99.63%, respectively) (phosphatidylglycerol) lipids was monitored by solid-state are ideal to study these changes in the environment near NMR techniques using as probes the 31Pand14NNMR the lipid headgroup in model lipid bilayers. Nitrogen-14 is active nuclei located at the lipid headgroups. In general, it a quadrupole nucleus that shares deuterium’s sensitivity to is shown that 14NNMRmaybecoupledto31PNMRtech- changes in bilayer surface charge (the ‘molecular voltmeter niques to distinguish between changes in lipid headgroup effect’).23 In spite of its high natural abundance and sensitiv- conformation and dynamics upon the inclusion of different ity to changes in electric field gradient, relatively few studies charged amphiphiles. Specifically, the results show that the have made use of this nucleus.1,24–32 From the results of these inclusion of desipramine in lipid bilayers results primarily studies, three important conclusions of particular relevance in a decrease in order of the PC lipid headgroup while leav- to this investigation can be drawn. First, the 14N nucleus ing the conformation of the headgroup largely unchanged. appears to be more sensitive than deuterium since slight dis- In contrast, imipramine is shown to alter both conformation tortions of the tetrahedral symmetry upon addition of anionic and order of the lipid headgroups. Changes in overall bilayer amphiphiles result in large spectral changes.32 Second, the architecture were determined to be highly dependent on the order of the choline headgroup is independent of the order TCA’s effective charge and steric constraints. It is concluded of the acyl chains and the phosphate moiety, as shown by that the ability of TCAs to induce lipidosis in vivo is not the observed concurrent 28% decrease in the 14N quadrupole correlated in a straightforward manner with TCA-induced splitting and 20% increase in 31P chemical shift anisotropy changes in overall bilayer architecture. (CSA) span upon addition of the local anesthetic tetracaine (at a lipid to tetracaine molar ratio of 2.6 : 1).30 Finally, the EXPERIMENTAL choline headgroup is sensitive to desipramine, as evidenced by the 50% decrease in the lipid quadrupole splitting in the Materials presence of the drug in a 1 : 2 mole ratio.1 Nitrogen-14 has an The phospholipids, 1-Palmitoyl-2-oleoyl-sn-glycero-3-phos- additional advantage in studying model lipid bilayers as it phatidylcholine (POPC) and 1-palmitoyl-2-oleoyl-sn-gly- allows for the isolated study of PC since most other 14Nnuclei cero-3-phosphatidylglycerol (POPG) were purchased from (from proteins, other lipids or drugs) do not contribute to the Avanti Polar Lipids (Alabaster, AL, USA) and used without 14N NMR signal due to large quadrupole coupling constants. further purification. The purity of the lipids was checked Copyright 2004 John Wiley & Sons, Ltd. Magn. Reson. Chem. 2004; 42: 105–114 Effects of antidepressants on the conformation of phospholipid headgroups 107 ° µ by thin-layer chromatography using CH3Cl–CH3OH–H2O the 90 pulse width and delay were 3–4 and 80 s, respec- (85 : 30 : 3) as solvent system and iodine as visualiza- tively.
Recommended publications
  • Download Product Insert (PDF)
    PRODUCT INFORMATION 1-Palmitoyl-2-oleoyl-sn-glycero-3-PC Item No. 15102 CAS Registry No.: 26853-31-6 Formal Name: 1-palmitoyl-2-oleoyl-sn-glycero-3- O phosphatidylcholine Synonyms: 1-Palmitoyl-2-oleoyl-sn-glycero-3- O O Phosphocholine, 1,2-POPC O MF: C42H82NO8P FW: 760.1 O N+ Purity: ≥98% O P O Supplied as: A crystalline solid O- Storage: -20°C Stability: ≥2 years Information represents the product specifications. Batch specific analytical results are provided on each certificate of analysis. Laboratory Procedures 1-Palmitoyl-2-oleoyl-sn-glycero-3-PC (1,2-POPC) is supplied as a crystalline solid. A stock solution may be made by dissolving the 1,2-POPC in the solvent of choice, which should be purged with an inert gas. 1,2-POPC is soluble in the organic solvent ethanol at a concentration of approximately 25 mg/ml. Description 1,2-POPC is a phospholipid containing 16:0 and 18:1 fatty acids at the sn-1 and sn-2 positions, respectively. It belongs to a class of phospholipids that are a major component of biological membranes.1,2 This compound can be used for liposome production in order to study the properties of lipid bilayers. References 1. Moreno, M.J., Estronca, L.M.B.B., and Vaz, W.L.C. Translocation of phospholipids and dithionite permeability in liquid-ordered and liquid-disordered membranes. Biophys. J. 91, 873-881 (2006). 2. Heberle, F.A. and Feigenson, G.W. Phase separation in lipid membranes. Cold Spring Harb. Perspect. Biol. 3(4), 1-13 (2011).
    [Show full text]
  • (4,5)-Bisphosphate Destabilizes the Membrane of Giant Unilamellar Vesicles
    5112 Biophysical Journal Volume 96 June 2009 5112–5121 Profilin Interaction with Phosphatidylinositol (4,5)-Bisphosphate Destabilizes the Membrane of Giant Unilamellar Vesicles Kannan Krishnan,† Oliver Holub,‡ Enrico Gratton,‡ Andrew H. A. Clayton,§ Stephen Cody,§ and Pierre D. J. Moens†* †Centre for Bioactive Discovery in Health and Ageing, School of Science and Technology, University of New England, Armidale, Australia; ‡Laboratory for Fluorescence Dynamics, Department of Biomedical Engineering, University of California, Irvine, California; and §Ludwig Institute for Cancer Research, Royal Melbourne Hospital, Victoria, Australia ABSTRACT Profilin, a small cytoskeletal protein, and phosphatidylinositol (4,5)-bisphosphate [PI(4,5)P2] have been implicated in cellular events that alter the cell morphology, such as endocytosis, cell motility, and formation of the cleavage furrow during cytokinesis. Profilin has been shown to interact with PI(4,5)P2, but the role of this interaction is still poorly understood. Using giant unilamellar vesicles (GUVs) as a simple model of the cell membrane, we investigated the interaction between profilin and PI(4,5)P2. A number and brightness analysis demonstrated that in the absence of profilin, molar ratios of PI(4,5)P2 above 4% result in lipid demixing and cluster formations. Furthermore, adding profilin to GUVs made with 1% PI(4,5)P2 leads to the forma- tion of clusters of both profilin and PI(4,5)P2. However, due to the self-quenching of the dipyrrometheneboron difluoride-labeled PI(4,5)P2, we were unable to determine the size of these clusters. Finally, we show that the formation of these clusters results in the destabilization and deformation of the GUV membrane.
    [Show full text]
  • Cholesterol in Condensed and Fluid Phosphatidylcholine Monolayers Studied by Epifluorescence Microscopy
    Biophysical Journal Volume 72 June 1997 2569-2580 2569 Cholesterol in Condensed and Fluid Phosphatidylcholine Monolayers Studied by Epifluorescence Microscopy Lynn-Ann D. Worthman,* Kaushik Nag,* Philip J. Davis,* and Kevin M. W. Keough*# *Department of Biochemistry and #Discipline of Pediatrics, Memorial University of Newfoundland, St. John's, Newfoundland Al B 3X9, Canada ABSTRACT Epifluorescence microscopy was used to investigate the effect of cholesterol on monolayers of dipalmi- toylphosphatidylcholine (DPPC) and 1 -palmitoyl-2-oleoyl phosphatidylcholine (POPC) at 21 ± 20C using 1 mol% 1 -palmitoyl- 2-{1 2-[(7-nitro-2-1, 3-benzoxadizole-4-yl)amino]dodecanoyl}phosphatidylcholine (NBD-PC) as a fluorophore. Up to 30 mol% cholesterol in DPPC monolayers decreased the amounts of probe-excluded liquid-condensed (LC) phase at all surface pressures (ir), but did not effect the monolayers of POPC, which remained in the liquid-expanded (LE) phase at all 7r. At low (2-5 mN/m), 10 mol% or more cholesterol in DPPC induced a lateral phase separation into dark probe-excluded and light probe-rich regions. In POPC monolayers, phase separation was observed at low IT when .40 mol% or more cholesterol was present. The lateral phase separation observed with increased cholesterol concentrations in these lipid monolayers may be a result of the segregation of cholesterol-rich domains in ordered fluid phases that preferentially exclude the fluorescent probe. With increasing 7r, monolayers could be transformed from a heterogeneous dark and light appearance into a homogeneous fluorescent phase, in a manner that was dependent on ir and cholesterol content. The packing density of the acyl chains may be a determinant in the interaction of cholesterol with phosphatidylcholine (PC), because the transformations in monolayer surface texture were observed in phospholipid (PL)/sterol mixtures having similar molecular areas.
    [Show full text]
  • Chiral Supramolecular Architecture of Stable Transmembrane Pores
    www.nature.com/scientificreports OPEN Chiral supramolecular architecture of stable transmembrane pores formed by an α-helical antibiotic peptide in the presence of lyso- lipids Erik Strandberg1, David Bentz2, Parvesh Wadhwani1 & Anne S. Ulrich1,2* The amphipathic α-helical antimicrobial peptide MSI-103 (aka KIA21) can form stable transmembrane pores when the bilayer takes on a positive spontaneous curvature, e.g. by the addition of lyso-lipids. Solid-state 31P- and 15N-NMR demonstrated an enrichment of lyso-lipids in these toroidal wormholes. Anionic lyso-lipids provided additional stabilization by electrostatic interactions with the cationic peptides. The remaining lipid matrix did not afect the nature of the pore, as peptides maintained the same orientation independent of lipid charge, and a change in membrane thickness did not considerably afect their tilt angle. Under optimized conditions (i.e. in the presence of lyso-lipids and appropriate bilayer thickness), stable and well-aligned pores could be obtained for solid-state 2H-NMR analysis. These data revealed for the frst time the complete 3D alignment of this representative amphiphilic peptide in fuid membranes, which is compatible with either monomeric helices as constituents, or left- handed supercoiled dimers as building blocks from which the overall toroidal wormhole is assembled. Membrane-active antimicrobial peptides (AMPs) can kill microorganisms by permeabilizing the cell mem- brane. They are attracting much attention as potential new antibiotics against the increasingly common multidrug-resistant bacterial strains1–4. While it is clear that these peptides can target a wide range of microorgan- isms, the molecular mechanisms of membrane permeabilization are not yet fully characterized.
    [Show full text]
  • Diethylstilbestrol Modifies the Structure of Model Membranes And
    biomolecules Article DiethylstilbestrolArticle Modifies the Structure of Model Membranes Diethylstilbestrol Modifies the Structure of Model Membranes andand Is Is Localized Localized Close Close to the First Carbons of the Fatty Acyl Chains AlessioAlessio Ausili, Inés Inés Rodríguez-González, Rodríguez-González, Alejandro Torrecillas, JosJoséé A.A. TeruelTeruel andand JuanJuan C.C. GGómez-Fernándezómez-Fernández ** Departamento de Bioquímica y Biología Molecular “A”, Facultad de Veterinaria, Regional Campus of Departamento de Bioquímica y Biología Molecular “A”, Facultad de Veterinaria, Regional Campus of International Excellence “Campus Mare Nostrum”, Universidad de Murcia, Apartado de Correos 4021, International Excellence “Campus Mare Nostrum”, Universidad de Murcia, Apartado de Correos 4021, E-30080-Murcia, Spain; [email protected] (A.A.); [email protected] (I.R.-G.); [email protected] (A.T.); E-30080 Murcia, Spain; [email protected] (A.A.); [email protected] (I.R.-G.); [email protected] (A.T.); [email protected] (J.A.T.) [email protected] (J.A.T.) ** Correspondence: [email protected]; Tel.: +34 +34-868-884-766;-868-884-766; Fax: +34968364147 +34-968-364-147 Abstract:Abstract: TheThe synthetic synthetic estrogen estrogen diethylstilbestrol diethylstilbestrol (DES) (DES) is is used used to to treat treat metastatic metastatic carcinomas carcinomas and and prostateprostate cancer. cancer. We We studied studied its its interaction interaction with with membranes membranes and and its its localization to to understand its its mechanismmechanism of of action action and and side-effects. side-effects. We We used used differential differential scanning scanning calorimetry calorimetry (DSC) (DSC) showing showing that DESthat fluidized DES fluidized the membrane the membrane and has and poor has solubility poor solubility in DMPC in DMPC (1,2-dimyristoyl- (1,2-dimyristoyl-sn-glycero-3-phos-sn-glycero-3- phocholine)phosphocholine) in the influid the state.
    [Show full text]
  • Phospholipid-Cellulose Interactions: Insight from Atomistic Computer Simulations for Understanding the Impact of Cellulose-Based Materials on Plasma Membranes
    bioRxiv preprint doi: https://doi.org/10.1101/425686; this version posted September 25, 2018. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC-ND 4.0 International license. Phospholipid-Cellulose Interactions: Insight from Atomistic Computer Simulations for Understanding the Impact of Cellulose-Based Materials on Plasma Membranes Andrey A. Gurtovenko,∗,† Evgenii I. Mukhamadiarov,‡ Andrei Yu. Kostritskii,‡ and Mikko Karttunen¶,§,† †Institute of Macromolecular Compounds, Russian Academy of Sciences, Bolshoi Prospect V.O. 31, St.Petersburg, 199004 Russia ‡Faculty of Physics, St.Petersburg State University, Ulyanovskaya str. 3, Petrodvorets, St.Petersburg, 198504 Russia ¶Department of Chemistry, the University of Western Ontario,1151 Richmond Street, London, Ontario, Canada N6A 3K7 §Department of Applied Mathematics, the University of Western Ontario, 1151 Richmond Street, London, Ontario, Canada N6A 5B7 E-mail: [email protected];Web:biosimu.org 1 bioRxiv preprint doi: https://doi.org/10.1101/425686; this version posted September 25, 2018. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC-ND 4.0 International license. Abstract Cellulose is an important biocompatible and nontoxic polymer widely used in nu- merous biomedical applications. The impact of cellulose-based materials on cells and, more specifically, on plasma membranes that surround cells, however, remains poorly understood. To this end, here we performed atomic-scale molecular dynamics (MD) simulations of phosphatidylcholine (PC) and phosphatidylethanolamine (PE) bilayers interacting with the surface of a cellulose crystal.
    [Show full text]
  • PCCP Accepted Manuscript
    PCCP Accepted Manuscript This is an Accepted Manuscript, which has been through the Royal Society of Chemistry peer review process and has been accepted for publication. Accepted Manuscripts are published online shortly after acceptance, before technical editing, formatting and proof reading. Using this free service, authors can make their results available to the community, in citable form, before we publish the edited article. We will replace this Accepted Manuscript with the edited and formatted Advance Article as soon as it is available. You can find more information about Accepted Manuscripts in the Information for Authors. Please note that technical editing may introduce minor changes to the text and/or graphics, which may alter content. The journal’s standard Terms & Conditions and the Ethical guidelines still apply. In no event shall the Royal Society of Chemistry be held responsible for any errors or omissions in this Accepted Manuscript or any consequences arising from the use of any information it contains. www.rsc.org/pccp Page 1 of 16 Physical Chemistry Chemical Physics Effect of Lipid Head Group Interactions in Membrane Properties and Membrane-Induced Cationic β-Hairpin Folding† a,c b,c d Sai J Ganesan, , Hongcheng Xu, and Silvina Matysiak∗ Membrane interfaces (mIFs) are ubiquitous components of living cells and are host to many essential biological processes. One key characteristic of mIFs is the dielectric gradient and subsequently, electrostatic potential that arises from dipolar interactions in the head group region. In this work, we present a coarse-grained (CG) model for anionic and zwitterionic lipids that accounts for dipolar intricacies in the head group region.
    [Show full text]
  • Product Information
    Product Information 1-Palmitoyl-2-oleoyl-sn-glycero-3-PC Item No. 15102 CAS Registry No.: 26853-31-6 O Formal Name: 1-palmitoyl-2-oleoyl-sn-glycero-3- phosphatidylcholine O Synonyms: 1-Palmitoyl-2-oleoyl-sn-glycero-3- O Phosphocholine, 1,2-POPC O MF: C42H82NO8P O FW: 760.1 N+ Purity: ≥98% O P O Stability: ≥2 years at -20°C O- Supplied as: A crystalline solid Laboratory Procedures For long term storage, we suggest that 1-palmitoyl-2-oleoyl-sn-glycero-3-PC (1,2-POPC) be stored as supplied at -20°C. It should be stable for at least two years. 1,2-POPC is supplied as a crystalline solid. A stock solution may be made by dissolving the 1,2-POPC in the solvent of choice. 1,2-POPC is soluble in ethanol at a concentration of approximately 25 mg/ml. 1,2-POPC is sparingly soluble in aqueous solutions. To enhance aqueous solubility, dilute the organic solvent solution into aqueous buffers or isotonic saline. If performing biological experiments, ensure the residual amount of organic solvent is insignificant, since organic solvents may have physiological effects at low concentrations. We do not recommend storing the aqueous solution for more than one day. 1,2-POPC is a phospholipid containing 16:0 and18:1 fatty acids at the sn-1 and sn-2 positions, respectively. It belongs to a class of phospholipids that are a major component of biological membranes.1,2 This compound can be used for liposome production in order to study the properties of lipid bilayers.
    [Show full text]
  • Molecular Dynamics Study of Binary POPC Bilayers: Molecular Condensing Effects on Membrane Structure and Dynamics
    Journal of Physics: Conference Series PAPER • OPEN ACCESS Recent citations Molecular dynamics study of binary POPC - Molecular dynamics simulations of the effects of lipid oxidation on the bilayers: molecular condensing effects on permeability of cell membranes membrane structure and dynamics Daniel Wiczew et al - Ring assembly of c subunits of F 0 F 1 ATP synthase in Propionigenium To cite this article: Hiroaki Saito et al 2018 J. Phys.: Conf. Ser. 1136 012022 modestum requires YidC and UncI following MPIasedependent membrane insertion Hanako Nishikawa et al - Beyond Shielding: The Roles of Glycans in View the article online for updates and enhancements. the SARS-CoV-2 Spike Protein Lorenzo Casalino et al This content was downloaded from IP address 170.106.33.19 on 26/09/2021 at 04:48 XXIXth IUPAP Conference on Computational Physics CCP2017 IOP Publishing IOP Conf. Series: Journal of Physics: Conf. Series 1136 (2018) 012022 doi:10.1088/1742-6596/1136/1/012022 Molecular dynamics study of binary POPC bilayers: molecular condensing effects on membrane structure and dynamics Hiroaki Saito1, *, Tetsuya Morishita2, Taku Mizukami3, Ken-ichi Nishiyama4, Kazutomo Kawaguchi5, and Hidemi Nagao5 1RIKEN, Quantitative Biology Center, Suita, Japan, 2CD-FMat, and MathAM-OIL, National Institute of Advanced Industrial Science and Technology (AIST), Tsukuba, Japan, 3Japan Advanced Institute of Science and Technology (JAIST), Nomi, Japan, 4Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, Morioka, Japan, 5Institute of Science and Engineering Kanazawa University, Kanazawa, Japan. *[email protected] Abstract. Molecular dynamics (MD) simulations of binary 1-palmitoyl-2- oleoyl-sn-glycero-3-phosphocholine (POPC) bilayers containing cholesterol (CHOL), ceramide (CER), diacylglycerol (DAG), or sphingomyelin (SM) were carried out to investigate effects of these molecules on the structure and dynamics of membranes.
    [Show full text]
  • Anatrace 2014 Catalog
    We set our standards high. So you can, too. C a t a l o g DetergentS | Lipids | CuStomS | HigHer StanDards Table of Contents t Ordering Information . 2 able of Terms and Conditions . 3-5 General Information Detergents .and .Their .Uses .In .Membrane .Protein .Science . 8-15 Detergent .Properties . 16-23 Detergent .Analysis . 24 Starter .Detergent .Library . 25 Detergents c General .Information—Detergents . 28 ontents Amine .Oxides . 29-30 CYMALs . 31-37 Glucosides . 38-45 HEGAs .and .Megas . 46-49 Maltosides . 50-63 NG .Class . 64-67 Thioglucosides .and .Thiomaltosides . 68-71 Lipids General .Information—Lipids . 74 Cholesterols . 75-77 Cyclofos™ . 78-79 Fos-Choline® . 80-90 Fos-Meas . 91 Lipids . 92-94 LysoFos® . 95-97 Industrial Detergents General .Information—Industrial .Detergents . 100 Anapoe® . .101-106 Anzergent® . .107-108 Ionic . .109-111 MB .Reagents . .112-118 NDSB . 119 Zwitterionic . .120-121 Specialty Detergents General .Information—Specialty .Detergents . 124 Alkyl .PEGs . .125-126 Amphipols . .127-130 BisMalts . .131-132 Complex . 133 Deuterated . .134-138 . Fluorinated . 139 . Lipidic .Cubic .Phase .(LCP) . 140 . Selenated . .141-143 . Spin .Label .Reagents . 144 . TriPod . 145 . Detergent Kits General .Information—Kits . .148 Solid .Kits . .149-150 . Solution .Kits . 151 Custom Products . .154-155 Indexes Product .Number . .158-159 Product .Name . .160-161 CAS .Registry . .162-164 www.anatrace.com 1 Ordering Information Placing Orders Package Weight Telephone: . Monday-Friday .8:00 .AM–5:00 .PM .(EST) . Unless .otherwise .specified, .the .package .will .contain .at .least .the . Toll .free .in .the .U .S . .1-800-252-1280 . indicated .amount .and .usually .slightly .more . .The .user .is .cautioned . Or .call .419-740-6600 to .always .measure .the .required .amount .from .the .container .
    [Show full text]
  • Current Research in Phospholipids and Their Use in Drug Delivery
    pharmaceutics Review Review TheThe PhospholipidPhospholipid ResearchResearch Center:Center: CurrentCurrent ResearchResearch inin PhospholipidsPhospholipids andand TheirTheir UseUse inin DrugDrug DeliveryDelivery SimonSimon DrescherDrescher ** andand Peter Peter van van Hoogevest Hoogevest PhospholipidPhospholipid ResearchResearch Center,Center, ImIm NeuenheimerNeuenheimerFeld Feld 515, 515, 69120 69120 Heidelberg, Heidelberg, Germany; Germany; [email protected] [email protected] * Correspondence: [email protected]; Tel.: +49-06221-588-83-60 * Correspondence: [email protected]; Tel.: +49-06221-588-83-60 Received:Received: 24 November 2020;2020; Accepted:Accepted: 14 December 2020; Published: 18 December 2020 Abstract:Abstract: ThisThis reviewreview summarizessummarizes thethe researchresearch onon phospholipidsphospholipids andand theirtheir useuse forfor drugdrug deliverydelivery relatedrelated toto thethe PhospholipidPhospholipid ResearchResearch CenterCenter HeidelbergHeidelberg (PRC).(PRC). TheThe focusfocus isis onon projectsprojects thatthat havehave beenbeen approvedapproved by by the the PRC PRC since since 2017 2017 and areand currently are currently still ongoing still ongoing or have recentlyor have been recently completed. been Thecompleted. different The projects different cover projects all facets cover of all phospholipid facets of phospholipid research, fromresearch, basic from to applied basic to research, applied includingresearch, including the
    [Show full text]
  • Non-Disruptive Uptake of Anionic and Cationic Gold Nanoparticles
    www.nature.com/scientificreports OPEN Non‑disruptive uptake of anionic and cationic gold nanoparticles in neutral zwitterionic membranes Ester Canepa1,4, Sebastian Salassi2,4, Federica Simonelli2,4, Riccardo Ferrando2, Ranieri Rolandi2, Chiara Lambruschini1, Fabio Canepa1, Silvia Dante3, Annalisa Relini2* & Giulia Rossi2* The potential toxicity of ligand‑protected nanoparticles (NPs) on biological targets is crucial for their clinical translation. A number of studies are aimed at investigating the molecular mechanisms shaping the interactions between synthetic NPs and neutral plasma membranes. The role played by the NP surface charge is still widely debated. We compare, via liposome leakage assays, the perturbation induced by the penetration of sub‑6 nm anionic and cationic Au NPs into model neutral lipid membranes composed of the zwitterionic 1‑palmitoyl‑2‑oleoyl‑sn‑glycero‑3‑phosphocholine (POPC). Our charged Au NPs are functionalized by a mixture of the apolar 1‑octanethiol and a ω‑charged thiol which is either the anionic 11‑mercapto‑1‑undecanesulfonate or the cationic (11‑mercaptoundecyl)‑ N,N,N‑trimethylammonium. In both cases, the NP uptake in the bilayer is confrmed by quartz crystal microbalance investigations. Our leakage assays show that both negatively and positively charged Au NPs do not induce signifcant membrane damage on POPC liposomes when penetrating into the bilayer. By means of molecular dynamics simulations, we show that the energy barrier for membrane penetration is the same for both NPs. These results suggest that the sign of the NP surface charge, per se, does not imply diferent physicochemical mechanisms of interaction with zwitterionic lipid membranes. Synthetic ligand-protected inorganic nanoparticles (NPs) have triggered important advances in diferent areas of nanomedicine, ranging from drug delivery and photothermal therapies to bioimaging and biosensing1.
    [Show full text]