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An Empirical Assessment of a Single Family‐Wide Hybrid Capture Locus
APPLICATION ARTICLE An empirical assessment of a single family-wide hybrid capture locus set at multiple evolutionary timescales in Asteraceae Katy E. Jones1,14 , Tomáš Fér2 , Roswitha E. Schmickl2,3 , Rebecca B. Dikow4 , Vicki A. Funk5 , Sonia Herrando-Moraira6 , Paul R. Johnston7,8,9, Norbert Kilian1 , Carolina M. Siniscalchi10,11 , Alfonso Susanna6 , Marek Slovák2,12 , Ramhari Thapa10,11, Linda E. Watson13 , and Jennifer R. Mandel10,11 Manuscript received 27 February 2019; revision accepted PREMISE: Hybrid capture with high-throughput sequencing (Hyb-Seq) is a powerful tool for 5 September 2019. evolutionary studies. The applicability of an Asteraceae family-specific Hyb-Seq probe set and 1 Botanischer Garten und Botanisches Museum Berlin, Freie the outcomes of different phylogenetic analyses are investigated here. Universität Berlin, Königin-Luise-Str. 6–8, 14195 Berlin, Germany 2 Department of Botany, Faculty of Science, Charles University, METHODS: Hyb-Seq data from 112 Asteraceae samples were organized into groups at differ- Benátská 2, CZ 12800 Prague, Czech Republic ent taxonomic levels (tribe, genus, and species). For each group, data sets of non-paralogous 3 Institute of Botany, The Czech Academy of Sciences, Zámek 1, CZ loci were built and proportions of parsimony informative characters estimated. The impacts 25243 Průhonice, Czech Republic of analyzing alternative data sets, removing long branches, and type of analysis on tree reso- 4 Data Science Lab, Office of the Chief Information lution and inferred topologies were investigated in tribe Cichorieae. Officer, Smithsonian Institution, Washington, D.C. 20013-7012, USA RESULTS: Alignments of the Asteraceae family-wide Hyb-Seq locus set were parsimony infor- 5 Department of Botany, National Museum of Natural mative at all taxonomic levels. -
Dwarf Woolly-Heads (Psilocarphus Brevissimus)
PROPOSED Species at Risk Act Recovery Strategy Series Adopted under Section 44 of SARA Multi-species Recovery Strategy for the Princeton Landscape, including Dwarf Woolly-heads (Psilocarphus brevissimus) Southern Mountain Population, Slender Collomia (Collomia tenella), and Stoloniferous Pussytoes (Antennaria flagellaris) in Canada Princeton Landscape: Dwarf Woolly-heads Southern Mountain Population, Slender Collomia, and Stoloniferous Pussytoes 2013 Recommended citation Environment Canada. 2013. Multi-species Recovery Strategy for the Princeton Landscape, including Dwarf Woolly-heads (Psilocarphus brevissimus) Southern Mountain Population, Slender Collomia (Collomia tenella), and Stoloniferous Pussytoes (Antennaria flagellaris) in Canada [Proposed]. Species at Risk Act Recovery Strategy Series. Environment Canada, Ottawa. 20 pp. + Appendix. For copies of the recovery strategy, or for additional information on species at risk, including COSEWIC Status Reports, residence descriptions, action plans, and other related recovery documents, please visit the Species at Risk Public Registry (www.sararegistry.gc.ca). Cover illustration: Terry T. McIntosh Également disponible en français sous le titre « Programme de rétablissement plurispécifique pour le paysage de Princeton visant le psilocarphe nain (Psilocarphus brevissimus) - population des montagnes du Sud, le collomia délicat (Collomia tenella) et l'antennaire stolonifère (Antennaria flagellaris) au Canada [Proposition] » © Her Majesty the Queen in Right of Canada, represented by the Minister -
Washington Flora Checklist a Checklist of the Vascular Plants of Washington State Hosted by the University of Washington Herbarium
Washington Flora Checklist A checklist of the Vascular Plants of Washington State Hosted by the University of Washington Herbarium The Washington Flora Checklist aims to be a complete list of the native and naturalized vascular plants of Washington State, with current classifications, nomenclature and synonymy. The checklist currently contains 3,929 terminal taxa (species, subspecies, and varieties). Taxa included in the checklist: * Native taxa whether extant, extirpated, or extinct. * Exotic taxa that are naturalized, escaped from cultivation, or persisting wild. * Waifs (e.g., ballast plants, escaped crop plants) and other scarcely collected exotics. * Interspecific hybrids that are frequent or self-maintaining. * Some unnamed taxa in the process of being described. Family classifications follow APG IV for angiosperms, PPG I (J. Syst. Evol. 54:563?603. 2016.) for pteridophytes, and Christenhusz et al. (Phytotaxa 19:55?70. 2011.) for gymnosperms, with a few exceptions. Nomenclature and synonymy at the rank of genus and below follows the 2nd Edition of the Flora of the Pacific Northwest except where superceded by new information. Accepted names are indicated with blue font; synonyms with black font. Native species and infraspecies are marked with boldface font. Please note: This is a working checklist, continuously updated. Use it at your discretion. Created from the Washington Flora Checklist Database on September 17th, 2018 at 9:47pm PST. Available online at http://biology.burke.washington.edu/waflora/checklist.php Comments and questions should be addressed to the checklist administrators: David Giblin ([email protected]) Peter Zika ([email protected]) Suggested citation: Weinmann, F., P.F. Zika, D.E. Giblin, B. -
A Preliminary Survey of the Diversity of Soil Algae And'cyanoprokaryotes'on
Venter, et al. 2015. Published in Australian Journal of Botany. 63:341-352. A preliminary survey of the diversity of soil algae and cyanoprokaryotes on mafic and ultramafic substrates in South Africa , , Arthurita Venter A C, Anatoliy Levanets A, Stefan Siebert A and Nishanta RajakarunaA B AUnit for Environmental Sciences and Management, North-West University, Private Bag X6001, Potchefstroom, 2520, South Africa. BCollege of the Atlantic, 105 Eden Street, Bar Harbor, ME 04609, USA. CCorresponding author. Email: [email protected] Abstract. Despite a large body of work on the serpentine-substrate effect on vascular plants, little work has been undertaken to describe algal communities found on serpentine soils derived from peridotite and other ultramafic rocks. We report a preliminary study describing the occurrence of algae and cyanoprokaryotes on mafic and ultramafic substrates from South Africa. Results suggest that slope and aspect play a key role in species diversity and community composition and, although low pH, nutrients and metal content do not reduce species richness, these edaphic features also influence species composition. Further, typical soil genera such as Leptolyngbya, Microcoleus, Phormidium, Chlamydomonas, Chlorococcum and Hantzschia were found at most sites. Chroococcus sp., Scytonema ocellatum, Nostoc linckia, Chlorotetraedron sp., Hormotilopsis gelatinosa, Klebsormidium flaccidium, Pleurococcus sp. and Tetracystis elliptica were unique to one serpentine site. The preliminary survey provides directions for future research on the serpentine- substrate effect on algal and cyanoprokaryote diversity in South Africa. Additional keywords: algae, cryptogamic ecology, serpentine geoecology, species diversity. Introduction species (Siebert et al. 2002;O’Dell and Rajakaruna 2011) and A range of soils can develop from ultramafic rocks depending on are model settings for the study of plant ecology and evolution climate, time, relief, chemical composition of the parent materials (Harrison and Rajakaruna 2011). -
Newsletter Index 1-42.Pdf
Indexed through Vol. 42, number 5 June, 2016 Abronia crux-maltae 7(5):5-6 Achillea millefolium 5(8):4 Ackley, Merrel 10(7):2 Acorn muffins 21(3): 8 Aegilops triuncialis 28(7)6-7 Agropyron spicatum 3(9):5-6 Ailanthus altissima 36(1):3-4 Aizoaceae in Nevada 39(9):5-6 Allium 3(4):4-5 Alnus incana 27(1):6; in Nevada 34(2):3-6; 34(6):5 Anderson, Charles Lewis 11(6):7; 11(7):7 Anemopsis californica 33(1):5-7 Antennaria flagellaris 25(8):2-3 Antirrhinum kingii 17(2):6 Ants [discouraging them] 1(7):3 Aquilegia 27(6):3; 28(2):2-3; coerulea 6(3):5 Arabis glaucovalvula 39(1):4-5 Arboretum 11(2):5; 11(3):3 Arc Dome 15(2):3-4 Arctomecon californica 23(6):8-9 Area of critical environmental concern 6(8):6-7 Arenaria pusilla 1(2):3 Aristolochia californica 11(4):3-4 Artemisia tridentata 35(9):2, Asclepiadaceae 1(6):3 Asclepias 23(1):5-6; 26(5):3-4; cryptoceras 5(4):3; 11(5):7; eastwoodiana 11(2):5; speciosa 1(6):2 Ash Meadows 5(2):3-4; 5(3):5-6; 5(4):2; 7(1):3; 8(4):2-3; 8(5):6; 8(6):7-8; 8(8):3-4; 9(1):3; 9(5):4; 10(1):9-10; 10(2):1 Asteraceae 1(5):3 Astragalus ackermanii 6(5):9; bolanderi 41(5):3-5callithrix 7(5):8-9; gummifer 16(4):6; lentiginosus 34(5):3-4; lentiginosus 30(4):4-5; lentiginosus 36(4):2-7; lentiginosus var. -
FEIS Citation Retrieval System Keywords
FEIS Citation Retrieval System Keywords 29,958 entries as KEYWORD (PARENT) Descriptive phrase AB (CANADA) Alberta ABEESC (PLANTS) Abelmoschus esculentus, okra ABEGRA (PLANTS) Abelia × grandiflora [chinensis × uniflora], glossy abelia ABERT'S SQUIRREL (MAMMALS) Sciurus alberti ABERT'S TOWHEE (BIRDS) Pipilo aberti ABIABI (BRYOPHYTES) Abietinella abietina, abietinella moss ABIALB (PLANTS) Abies alba, European silver fir ABIAMA (PLANTS) Abies amabilis, Pacific silver fir ABIBAL (PLANTS) Abies balsamea, balsam fir ABIBIF (PLANTS) Abies bifolia, subalpine fir ABIBRA (PLANTS) Abies bracteata, bristlecone fir ABICON (PLANTS) Abies concolor, white fir ABICONC (ABICON) Abies concolor var. concolor, white fir ABICONL (ABICON) Abies concolor var. lowiana, Rocky Mountain white fir ABIDUR (PLANTS) Abies durangensis, Coahuila fir ABIES SPP. (PLANTS) firs ABIETINELLA SPP. (BRYOPHYTES) Abietinella spp., mosses ABIFIR (PLANTS) Abies firma, Japanese fir ABIFRA (PLANTS) Abies fraseri, Fraser fir ABIGRA (PLANTS) Abies grandis, grand fir ABIHOL (PLANTS) Abies holophylla, Manchurian fir ABIHOM (PLANTS) Abies homolepis, Nikko fir ABILAS (PLANTS) Abies lasiocarpa, subalpine fir ABILASA (ABILAS) Abies lasiocarpa var. arizonica, corkbark fir ABILASB (ABILAS) Abies lasiocarpa var. bifolia, subalpine fir ABILASL (ABILAS) Abies lasiocarpa var. lasiocarpa, subalpine fir ABILOW (PLANTS) Abies lowiana, Rocky Mountain white fir ABIMAG (PLANTS) Abies magnifica, California red fir ABIMAGM (ABIMAG) Abies magnifica var. magnifica, California red fir ABIMAGS (ABIMAG) Abies -
Rare Plant Surveys and Vegetation Mapping For
Appendix A Rare Plant and Vegetation Surveys 2002 and 2003 Santa Ysabel Ranch Open Space Preserve Prepared For The Nature Conservancy San Diego County Field Office The County of San Diego Department of Parks and Recreation By Virginia Moran, M.S. Botany Sole Proprietor Ecological Outreach Services P.O. Box 2858 Grass Valley, California 95945 Southeast view from the northern portion of the West Ranch with snow-frosted Volcan Mountain in the background. Information contained in this report is that of Ecological Outreach Services and all rights thereof reserved. Santa Ysabel Ranch Botanical Surveys 2 Contents I. Summary ……………………………………………………………… ……………. 4 II. Introduction and Methods……………………………..……………… …………… 5 III Results…………………………………………………………………...…………… 6 III.A. East Ranch Species of Interest Plant Communities III.B. West Ranch Species of Interest Plant Communities III.C. Sensitive Resources of the Santa Ysabel Ranch IV. Discussion……………………………………………………………….……………. 14 V. Conclusion…………………………………………….……………….……………… 18 VI. Management Recommendations…………………….……………………… …….. 19 VII. Suggested Future Projects………………….…….……………………… …………26 VIII. Acknowledgements…………………………………………………………… …….. 28 IX. References Cited / Consulted ……………………..……………………………….. 29 X. Maps and Figures ………………………….……………………………… ……... 30 Appendices 1 - 6 …………………………….…………………………………………….…44 Santa Ysabel Ranch Botanical Surveys 3 I. Summary The Santa Ysabel Ranch Open Space Preserve was established in 2001 from a purchase by The Nature Conservancy from the Edwards Family; the Ranch is now owned by the County of San Diego and managed as a Department of Parks and Recreation Open Space Preserve. It totals nearly 5,400 acres and is comprised of two parcels; an "East Ranch” and a "West Ranch". The East Ranch is east of the town of Santa Ysabel (and Highway 79 running north) and is bordered on the east by Farmer's Road in Julian. -
Stoloniferous Pussytoes (Antennaria Flagellaris)
COSEWIC Assessment and Status Report on the Stoloniferous Pussytoes Antennaria flagellaris in Canada ENDANGERED 2004 COSEWIC COSEPAC COMMITTEE ON THE STATUS OF COMITÉ SUR LA SITUATION ENDANGERED WILDLIFE DES ESPÈCES EN PÉRIL IN CANADA AU CANADA COSEWIC status reports are working documents used in assigning the status of wildlife species suspected of being at risk. This report may be cited as follows: COSEWIC 2004. COSEWIC assessment and status report on the stoloniferous pussytoes Antennaris flagellaris in Canada. Committee on the Status of Endangered Wildlife in Canada. Ottawa. vii+ 18 pp. (www.sararegistry.gc.ca/status/status_e.cfm). Douglas,G.W, Penny,J.L. and Barton,K. 2004. COSEWIC status report on the stoloniferous pussytoes Antennaris flagellaris in Canada, in COSEWIC assessment and status report on the stoloniferous pussytoes Antennaris flagellaris in Canada. Committee on the Status of Endangered Wildlife in Canada. Ottawa. 1-18 pp. Production note: COSEWIC acknowledges George W. Douglas, Jenifer L. Penny & Ksenia Barton for writing the status report on the stoloniferous pussytoes Antennaris flagellaris in Canada. COSEWIC also gratefully acknowledges the financial support of the BC Conservation Data Centre for the preparation of this report. The report was edited by Erich Haber, COSEWIC Co-chair (Vascular Plants) Plants and Lichens Species Specialist Subcommittee. For additional copies contact: COSEWIC Secretariat c/o Canadian Wildlife Service Environment Canada Ottawa, ON K1A 0H3 Tel.: (819) 997-4991 / (819) 953-3215 Fax: (819) 994-3684 E-mail: COSEWIC/[email protected] http://www.cosewic.gc.ca Ếgalement disponible en français sous le titre Ếvaluation et Rapport de situation du COSEPAC sur l’antennaire stolonifére (Antennaria flagellaris) au Canada. -
The Grasslands of British Columbia
The Grasslands of British Columbia The Grasslands of British Columbia Brian Wikeem Sandra Wikeem April 2004 COVER PHOTO Brian Wikeem, Solterra Resources Inc. GRAPHICS, MAPS, FIGURES Donna Falat, formerly Grasslands Conservation Council of B.C., Kamloops, B.C. Ryan Holmes, Grasslands Conservation Council of B.C., Kamloops, B.C. Glenda Mathew, Left Bank Design, Kamloops, B.C. PHOTOS Personal Photos: A. Batke, Andy Bezener, Don Blumenauer, Bruno Delesalle, Craig Delong, Bob Drinkwater, Wayne Erickson, Marylin Fuchs, Perry Grilz, Jared Hobbs, Ryan Holmes, Kristi Iverson, C. Junck, Bob Lincoln, Bob Needham, Paul Sandborn, Jim White, Brian Wikeem. Institutional Photos: Agriculture Agri-Food Canada, BC Archives, BC Ministry of Forests, BC Ministry of Water, Land and Air Protection, and BC Parks. All photographs are the property of the original contributor and can not be reproduced without prior written permission of the owner. All photographs by J. Hobbs are © Jared Hobbs. © Grasslands Conservation Council of British Columbia 954A Laval Crescent Kamloops, B.C. V2C 5P5 http://www.bcgrasslands.org/ All rights reserved. No part of this document or publication may be reproduced in any form without prior written permission of the Grasslands Conservation Council of British Columbia. ii Dedication This book is dedicated to the Dr. Vernon pathfinders of our ecological Brink knowledge and understanding of Dr. Alastair grassland ecosystems in British McLean Columbia. Their vision looked Dr. Edward beyond the dust, cheatgrass and Tisdale grasshoppers, and set the course to Dr. Albert van restoring the biodiversity and beauty Ryswyk of our grasslands to pristine times. Their research, extension and teaching provided the foundation for scientific management of our grasslands. -
Oak Creek Road #1400
Wildflowers Along the Oak Creek Road from US Highway 12 to the crest of Bethel Ridge Oak Creek Wildlife Area & Okanogan-Wenatchee National Forest Yakima County, WA from WNPS fieldtrips held June 2 &3, 2019 Updated: December 14, 2019 Common Name Scientific Name Family Mosses, Lichens, Ferns & Horsetails ____ Fragile Fern Cystopteris fragilis Cystopteridaceae ____ Lady Fern Athyrium filix-femina ssp. cyclosorum Dennstaedtiaceae ____ Field Horsetail Equisetum arvense Equisetaceae ____ Brown-eyed Wolf Lichen Letharia collumbiana Parmeliaceae ____ Haircap Moss Polytrichum pilferum Polytrichaceae ____ Oregon Fern Woodsia oregana ssp. oregana Woodsiaceae Monocots - Sedges, Rushes, Grasses & Herbaceous Wildflowers ____ Tapertip Onion Allium accuminatum Amaryllidaceae ____ Nevius' Onion Allium nevii Amaryllidaceae ____ False Solomon Seal Maianthemum racemosum ssp. amplexicaule Asparagaceae ____ Blue Dicks Triteleia grandiflora Asparagaceae ____ Big-leaf Sedge Carex amplifolia Cyperaceae ____ Elk Sedge Carex geyeri Cyperaceae ____ Retrorse Sedge Carex retrorsa Cyperaceae ____ Grass Widows Olsynium douglasii (v. douglasii ?) Iridaceae ____ Soft Rush Juncus effusus ssp. effusus Juncaceae ____ Lyall's Mariposa Calochortus lyallii Liliaceae ____ Glacier Lily Erythronium grandiflorum v. grandiflorum Liliaceae ____ Yellow Bells Fritillaria pudica Liliaceae ____ Columbia Tiger Lily Lilium columbianum Liliaceae ____ Panicled Deathcamas Toxicoscordion paniculatum Melanthiaceae ____ White False Hellebore Veratrum (californicum v. caudatum ?) Melanthiaceae ____ Thurber's Needlegrass Achnatherum thurberianum Poaceae ____ Field Meadow Foxtail Alopecurus pratensis Poaceae ____ Smooth Brome Bromus inermis Poaceae ____ Japanese Brome Bromus japonicus Poaceae ____ Poverty Brome Bromus sterilis Poaceae ____ Suksdorf's Brome Bromus suksdorfii Poaceae ____ Cheatgrass Bromus tectorum Poaceae ____ Columbian Brome Bromus vulgaris Poaceae ____ Orchard Grass Dactylis glomerata Poaceae ____ One-spike Oatgrass Danthonia unispicata Poaceae ____ Bottlebrush Squirreltail Elymus elymoides ssp. -
Supplement 2
--- - - --��---���-- INVENTORY of RARE AND ENDANGERED VASCULAR PLANTS of CALIFORNIA SECOND SUPPLEMENT Special Publication No. 1 (2nd Edition) California Native Plant Society February 1982 I RARE AND EDITED BY JAMES PAYNE SMITH, JR. AND RICHARD YORK Copyright MCMLXXXll California Native Plant Society 2380 Ellsworth, Suite D Berkeley, California 94704 T A B L E 0 F C 0 N T E N T S Introduction........................................... i Part I. Entry and data additions, deletions, and corrections............................. 1 Part II. Accepted additions and transfers of plants to and from lists and appendices A) Accepted additions ....................... 17 B) Accepted transfers ....................... 18 Part III. Proposed additions and transfers of plants to and from lists and appendices A) Proposed additions.. ..................... 21 B) Proposed transfers. ....... ........... 21 Part IV. Comments relating to material in the First Supplement. 22 Index. 23 SECOND SUPPLEMENT TO THE CNPS RARE PLANT INVENTORY Edited By James Payne Smith, Jr. and Richard York Introduction This is the Second Supplement to the 1980 edition of the California Native Plant Society's Inventory of Rare and Endangered Vascular Plants of California. The material presented here is d1v1ded into four ma]or sections : 1) Entry and data additions, deletions, and corrections In this section, you will find additions and deletions of distribution data, changes in scientific names brought about by recent publications, alternative common name for some plants that may be more appropriate than the ones we selected in the revision, additional literature citations, updating of designated rare and endangered plants by the State of California, and corrections of spelling and typographical errors. 2) Accepted additions and transfers of plants to and from lists and appendices. -
Frank J. Smith/Botanist Western Ecological Services, Inc
FRANK J. SMITH/BOTANIST WESTERN ECOLOGICAL SERVICES, INC. P.O. BOX 422 MILLVILLE, UTAH 84326 435-755-0606 [email protected] EDUCATION 1979 - B.S Degree in Plant Science, Minor Biology; Utah State University. PROFESSIONAL EXPERIENCE Botanist, White Horse Associates, Smithfield, Utah. 2000. Described wetland vegetation types in Owens Delta in California. Botanist, The Nature Conservancy, Minneapolis, Minnesota. 2000. Worked on a vegetation mapping project for Zion National Park. Botanist, The Nature Conservancy, Reno, Nevada. 2000. Conducted a rare plant survey for Hawthorne Army Depot in Nevada. Botanist, The Nature Conservancy, Las Vegas, Nevada.. 1998-2000. Collected data for a monitoring project for Arctomecon merriamii and Phacelia parishii on Nellis Air Force Bombing and Gunnery Range, in Nevada. Botanist, The Nature Conservancy, Las Vegas, Nevada. 1993-2000. Conducted an inventory of rare, threatened, endangered, and endemic plants and unique communities on Nellis Air Force Bombing and Gunnery Range, in Nevada. During this period, I discovered two new taxa of Phacelia, which will be named and published in the near future. Botanist, Bio-Resources, Logan, Utah. 1997-2000. Conducted a rare plant and wildlife inventories for Colorado Interstate Gas on proposed pipeline projects in Colorado, Kansas, New Mexico, Oklahoma, Utah and Wyoming. Botanist, Ecosystems Sciences, Boise, Idaho. 1998-99. Worked on a botanical inventory of 100 seeps and springs on the Lower Owens River Project for the Los Angeles Water Department in California. Botanist, Ohio State University, Columbus, Ohio. 1999. Assisted in a plant collecting trip to South Africa. Plants were collected in the Scrophulariaceae Family for a genetic study. Botanist, Sinclair Oil, Salt Lake City, Utah.