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Phylogeny of Malpighiaceae: Evidence from Chloroplast NDHF and TRNL-F Nucleotide Sequences
Phylogeny of Malpighiaceae: Evidence from Chloroplast NDHF and TRNL-F Nucleotide Sequences The Harvard community has made this article openly available. Please share how this access benefits you. Your story matters Citation Davis, Charles C., William R. Anderson, and Michael J. Donoghue. 2001. Phylogeny of Malpighiaceae: Evidence from chloroplast NDHF and TRNL-F nucleotide sequences. American Journal of Botany 88(10): 1830-1846. Published Version http://dx.doi.org/10.2307/3558360 Citable link http://nrs.harvard.edu/urn-3:HUL.InstRepos:2674790 Terms of Use This article was downloaded from Harvard University’s DASH repository, and is made available under the terms and conditions applicable to Other Posted Material, as set forth at http:// nrs.harvard.edu/urn-3:HUL.InstRepos:dash.current.terms-of- use#LAA American Journal of Botany 88(10): 1830±1846. 2001. PHYLOGENY OF MALPIGHIACEAE: EVIDENCE FROM CHLOROPLAST NDHF AND TRNL-F NUCLEOTIDE SEQUENCES1 CHARLES C. DAVIS,2,5 WILLIAM R. ANDERSON,3 AND MICHAEL J. DONOGHUE4 2Department of Organismic and Evolutionary Biology, Harvard University Herbaria, 22 Divinity Avenue, Cambridge, Massachusetts 02138 USA; 3University of Michigan Herbarium, North University Building, Ann Arbor, Michigan 48109-1057 USA; and 4Department of Ecology and Evolutionary Biology, Yale University, P.O. Box 208106, New Haven, Connecticut 06520 USA The Malpighiaceae are a family of ;1250 species of predominantly New World tropical ¯owering plants. Infrafamilial classi®cation has long been based on fruit characters. Phylogenetic analyses of chloroplast DNA nucleotide sequences were analyzed to help resolve the phylogeny of Malpighiaceae. A total of 79 species, representing 58 of the 65 currently recognized genera, were studied. -
UNIVERSIDADE ESTADUAL DE CAMPINAS Instituto De Biologia
UNIVERSIDADE ESTADUAL DE CAMPINAS Instituto de Biologia TIAGO PEREIRA RIBEIRO DA GLORIA COMO A VARIAÇÃO NO NÚMERO CROMOSSÔMICO PODE INDICAR RELAÇÕES EVOLUTIVAS ENTRE A CAATINGA, O CERRADO E A MATA ATLÂNTICA? CAMPINAS 2020 TIAGO PEREIRA RIBEIRO DA GLORIA COMO A VARIAÇÃO NO NÚMERO CROMOSSÔMICO PODE INDICAR RELAÇÕES EVOLUTIVAS ENTRE A CAATINGA, O CERRADO E A MATA ATLÂNTICA? Dissertação apresentada ao Instituto de Biologia da Universidade Estadual de Campinas como parte dos requisitos exigidos para a obtenção do título de Mestre em Biologia Vegetal. Orientador: Prof. Dr. Fernando Roberto Martins ESTE ARQUIVO DIGITAL CORRESPONDE À VERSÃO FINAL DA DISSERTAÇÃO/TESE DEFENDIDA PELO ALUNO TIAGO PEREIRA RIBEIRO DA GLORIA E ORIENTADA PELO PROF. DR. FERNANDO ROBERTO MARTINS. CAMPINAS 2020 Ficha catalográfica Universidade Estadual de Campinas Biblioteca do Instituto de Biologia Mara Janaina de Oliveira - CRB 8/6972 Gloria, Tiago Pereira Ribeiro da, 1988- G514c GloComo a variação no número cromossômico pode indicar relações evolutivas entre a Caatinga, o Cerrado e a Mata Atlântica? / Tiago Pereira Ribeiro da Gloria. – Campinas, SP : [s.n.], 2020. GloOrientador: Fernando Roberto Martins. GloDissertação (mestrado) – Universidade Estadual de Campinas, Instituto de Biologia. Glo1. Evolução. 2. Florestas secas. 3. Florestas tropicais. 4. Poliploide. 5. Ploidia. I. Martins, Fernando Roberto, 1949-. II. Universidade Estadual de Campinas. Instituto de Biologia. III. Título. Informações para Biblioteca Digital Título em outro idioma: How can chromosome number -
Instituto Nacional De Pesquisa Da Amazônia – Inpa
UNIVERSIDADE FEDERAL DO AMAZONAS - UFAM INSTITUTO NACIONAL DE PESQUISAS DA AMAZÔNIA – INPA PROGRAMA INTEGRADO DE PÓS-GRADUAÇÃO EM BIOLOGIA TROPICAL E RECURSOS NATURAIS DEPARTAMENTO DE BOTÂNICA TAXONOMIA E ANÁLISE CLADÍSTICA DOS GÊNEROS AMAZÔNICOS Burdachia A. Juss. E Glandonia Griseb. (MALPIGHIACEAE): INFERÊNCIAS MORFO -ANATÔMICAS ISABEL REIS E SILVA Manaus – AM Julho, 2007 UNIVERSIDADE FEDERAL DO AMAZONAS - UFAM INSTITUTO NACIONAL DE PESQUISAS DA AMAZÔNIA – INPA PROGRAMA INTEGRADO DE PÓS-GRADUAÇÃO EM BIOLOGIA TROPICAL E RECURSOS NATURAIS DEPARTAMENTO DE BOTÂNICA TAXONOMIA E ANÁLISE CLADÍSTICA DOS GÊNEROS AMAZÔNICOS Burdachia A. Juss. E Glandonia Griseb. (MALPIGHIACEAE): INFERÊNCIAS MORFO -ANATÔMICAS ISABEL REIS E SILVA Orientador: Dr. Eduardo Lleras Pérez Co-orientador: Dr. André Márcio Araújo Amorim Projeto de Pesquisa apresentado ao Programa Integrado de Pós-Graduação em Biologia Tropical e Recursos Naturais do convênio INPA/UFAM, como parte dos requisitos para obtenção do Título de Mestre em Ciências Biológicas, área de concentração em Botânica. Manaus – AM Julho, 2007 S586 Silva, Isabel Reis e Taxonomia e análise cladística dos gêneros amazônicos Burdachia A. Juss e Glandonia Griseb. (Malpighiaceae): inferências morfo-anatômicas / Isabel Reis e Silva.--- Manaus : [s.n.], 2007. viii, 78 f. : il. Dissertação (mestrado)-- INPA/UFAM, Manaus, 2007 Orientador : Eduardo Lleras Pérez Co-orientador : André Márcio Araújo Amorim Área de concentração : Botânica 1. Malpighiaceae – Análise cladística. 2. Burdachia. 3. Glandonia. 4. Taxonomia. 5. Morfologia. 6. Anatomia. I. Título. CDD 19. ed. 583.214 Sinopse: Estudou-se os gêneros amazônicos Burdachia e Glandonia com o enfoque taxonômico e cladístico. Atualizou-se a descrição taxonômica, propondo um novo sinônimo. Comparou-se caracteres morfológicos e anatômicos dos grupos junto à espécie irmã Mcvaughia bahiana, endêmica de caatingas do estado da Bahia. -
First Report of Modern Pollen Deposition in Moss Polsters in a Semiarid Area of Bahia, Brazil1
Acta Botanica Brasilica 29(4): 532-542. 2015. doi: 10.1590/0102-33062015abb0128 First report of modern pollen deposition in moss polsters in a semiarid area of Bahia, Brazil1 Daiane Alves dos Santos2, Luciene Cristina Lima e Lima3, Francisco de Assis Ribeiro dos Santos4 and Francisco Hilder Magalhães e Silva2* Received: May 20, 2015. Accepted: August 6, 2015 ABSTRACT Recent studies have shown that pollen analyses of natural substrates can produce data valuable for understanding the local pollen productivity and dispersal, deposition, and preservation potential of pollen grains. In this study, we aimed to acquire novel information about the dynamics and preservation of pollen in Caatinga environment through the palynological study of moss polsters. Samples of moss polsters in soil (MPS) and on rock (MPR) were collected from the Canudos Biological Station in the Bahia State (Brazil) and subjected to standard chemical treatments for the extraction of pollen residues. In total, 372 pollen types were recorded from the samples of which the taxonomical affinity of 140 was determined. The most represented families were Fabaceae (23 pollen types/16.42%) and Asteraceae (12 pollen types/8.57%). The MPS samples had a higher pollen concentration (21,042.04 pollen grains/cm²) than the MPR samples (7,829.35 pollen grains/cm²). On the other hand, the MPR samples had a greater diversity (68.26% of the identified pollen types). Qualitative analysis showed that the plants of shrub and subshrub habits had the grea- test representation among the pollen types (35.0%). Overall, moss polsters proved to be excellent natural air pollen collectors in Caatinga environment, provided they had moist microhabitats for their development. -
Molecular Systematics of Malpighiaceae: Evidence from Plastid Rbcl and Matk Sequences1
American Journal of Botany 88(10): 1847±1862. 2001. MOLECULAR SYSTEMATICS OF MALPIGHIACEAE: EVIDENCE FROM PLASTID RBCL AND MATK SEQUENCES1 KENNETH M. CAMERON,2,6 MARK W. C HASE,3 WILLIAM R. ANDERSON,4 AND HAROLD G. HILLS5 2The Lewis B. and Dorothy Cullman Program for Molecular Systematics Studies, The New York Botanical Garden, Bronx, New York 10458-5126 USA; 3Molecular Systematics Section, Jodrell Laboratory, Royal Botanic Gardens, Kew, Richmond, Surrey, TW9 3DS, UK; 4University of Michigan Herbarium, North University Building, Ann Arbor, Michigan 48109-1057 USA; and 5Molecular Biology Building, Iowa State University, Ames, Iowa 50011-3260 USA Phylogenetic analyses of DNA nucleotide sequences from the plastid genes rbcL and matK were employed to investigate intergeneric relationships within Malpighiaceae. Cladistic relationships generated from the independent data matrices for the family are generally in agreement with those from the combined matrix. At the base of Malpighiaceae are several clades mostly representing genera from a paraphyletic subfamily Byrsonimoideae. Intergeneric relationships among these byrsonimoid malpighs are well supported by the bootstrap, and the tribe Galphimeae is monophyletic. There is also a well-supported clade of genera corresponding to tribes Banisterieae plus Gaudichaudieae present in all trees, and many of the relationships among these banisterioid malpighs are well supported by the bootstrap. However, tribes Hiraeae and Tricomarieae (the hiraeoid malpighs) are paraphyletic and largely unresolved. Species of Mascagnia are distributed throughout these hiraeoid clades, con®rming the suspected polyphyly of this large genus. Optimization of selected morphological characters on these trees demonstrates clear phylogenetic trends such as the evolution of globally symmetrical from radially symmetrical pollen, increased modi®cation and sterilization of stamens, and switch from base chromosome number n 5 6ton 5 10. -
Phylogeny of the Eudicots : a Nearly Complete Familial Analysis Based On
KEW BULLETIN 55: 257 - 309 (2000) Phylogeny of the eudicots: a nearly complete familial analysis based on rbcL gene sequences 1 V. SAVOLAINENI.2, M. F. FAyl, D. c. ALBACHI.\ A. BACKLUND4, M. VAN DER BANK ,\ K. M. CAMERON1i, S. A. ]e)H;-.;so:--.;7, M. D. LLWOI, j.c. PINTAUDI.R, M. POWELL', M. C. SHEAHAN 1, D. E. SOLTlS~I, P. S. SOLTIS'I, P. WESTONI(), W. M. WHITTEN 11, K.J. WCRDACKI2 & M. W. CHASEl Summary, A phylogenetic analysis of 589 plastid rbcl. gene sequences representing nearly all eudicot families (a total of 308 families; seven photosynthetic and four parasitic families are missing) was performed, and bootstrap re-sampling was used to assess support for clades. Based on these data, the ordinal classification of eudicots is revised following the previous classification of angiosperms by the Angiosperm Phylogeny Group (APG) , Putative additional orders are discussed (e.g. Dilleniales, Escalloniales, VitaiRs) , and several additional families are assigned to orders for future updates of the APG classification. The use of rbcl. alone in such a large matrix was found to be practical in discovering and providing bootstrap support for most orders, Combination of these data with other matrices for the rest of the angiosperms should provide the framework for a complete phylogeny to be used in macro evolutionary studies, !:--':TRODL'CTlON The angiosperms are the first division of organisms to have been re-classified largely on the basis of molecular data analysed phylogenetically (APG 1998). Several large scale molecular phylogenies have been produced for the angiosperms, based on both plastid rbcL (Chase et al. -
High-Latitude Tertiary Migrations of an Exclusively Tropical Clade: Evidence from Malpighiaceae
High-latitude Tertiary Migrations of an Exclusively Tropical Clade: Evidence from Malpighiaceae The Harvard community has made this article openly available. Please share how this access benefits you. Your story matters Citation Davis, Charles C., Peter W. Fritsch, Charles D. Bell, and Sarah Mathews. 2004. High-latitude tertiary migrations of an exclusively tropical clade: Evidence from Malpighiaceae. International Journal of Plant Sciences 165(4): S107-S121. Published Version http://dx.doi.org/10.1086/383337 Citable link http://nrs.harvard.edu/urn-3:HUL.InstRepos:2710470 Terms of Use This article was downloaded from Harvard University’s DASH repository, and is made available under the terms and conditions applicable to Other Posted Material, as set forth at http:// nrs.harvard.edu/urn-3:HUL.InstRepos:dash.current.terms-of- use#LAA Int. J. Plant Sci. 165(4 Suppl.):S107–S121. 2004. Ó 2004 by The University of Chicago. All rights reserved. 1058-5893/2004/1650S4-0008$15.00 HIGH-LATITUDE TERTIARY MIGRATIONS OF AN EXCLUSIVELY TROPICAL CLADE: EVIDENCE FROM MALPIGHIACEAE Charles C. Davis,1;* Peter W. Fritsch,y Charles D. Bell,z and Sarah Mathews§ *Department of Ecology and Evolutionary Biology, University of Michigan Herbarium, 3600 Varsity Drive, Ann Arbor, Michigan 48108-2287, U.S.A.; yDepartment of Botany, California Academy of Sciences, Golden Gate Park, San Francisco, California 94118, U.S.A.; zFlorida Museum of Natural History, Dickinson Hall, University of Florida, Gainesville, Florida 32611, U.S.A.; and §Arnold Arboretum, Harvard University Herbaria, 22 Divinity Avenue, Cambridge, Massachusetts 02138, U.S.A. Explanations of tropical intercontinental disjunctions involving South America and Africa typically invoke vicariance of western Gondwanan biotas or long-distance dispersal. -
A Complete Generic Phylogeny of Malpighiaceae Inferred from Nucleotide Sequence Data and Morphology
A Complete Generic Phylogeny of Malpighiaceae Inferred from Nucleotide Sequence Data and Morphology The Harvard community has made this article openly available. Please share how this access benefits you. Your story matters Citation Davis, Charles C., and William R. Anderson. 2010. A complete generic phylogeny of Malpighiaceae inferred from nucleotide sequence data and morphology. American Journal of Botany 97(12): 2031-2048. Published Version doi:10.3732/ajb.1000146 Citable link http://nrs.harvard.edu/urn-3:HUL.InstRepos:5346382 Terms of Use This article was downloaded from Harvard University’s DASH repository, and is made available under the terms and conditions applicable to Other Posted Material, as set forth at http:// nrs.harvard.edu/urn-3:HUL.InstRepos:dash.current.terms-of- use#LAA American Journal of Botany 97(12): 2031–2048. 2010. A COMPLETE GENERIC PHYLOGENY OF MALPIGHIACEAE INFERRED FROM NUCLEOTIDE SEQUENCE DATA AND MORPHOLOGY 1 Charles C. Davis 2,4 and William R. Anderson 3 2 Department of Organismic and Evolutionary Biology, Harvard University Herbaria, 22 Divinity Avenue, Cambridge, Massachusetts 02138 USA; and 3 University of Michigan Herbarium, 3600 Varsity Drive, Ann Arbor, Michigan 48108 USA • Premise of the study : The Malpighiaceae include ~1300 tropical fl owering plant species in which generic defi nitions and inter- generic relationships have long been problematic. The goals of our study were to resolve relationships among the 11 generic segregates from the New World genus Mascagnia , test the monophyly of the largest remaining Malpighiaceae genera, and clarify the placement of Old World Malpighiaceae. • Methods : We combined DNA sequence data for four genes (plastid ndhF , matK , and rbcL and nuclear PHYC ) from 338 in- group accessions that represented all 77 currently recognized genera with morphological data from 144 ingroup species to produce a complete generic phylogeny of the family. -
MALPIGHIACEAE by Christiane Anderson
GUIDE TO THE GENERA OF LIANAS AND CLIMBING PLANTS IN THE NEOTROPICS MALPIGHIACEAE By Christiane Anderson A warm-temperate and tropical family of ca. 70 genera and ca. 1300 species of trees, shrubs, erect or trailing subshrubs or herbs with perennial underground structures, or woody to herbaceous, vines, predominantly neotropical but with some genera in Africa, Madagascar, southeast Asia, eastern Australia, New Guinea, and parts of Oceania. Vines are represented in the Neotropics by 33 genera and ca. 600 species that occur in diverse habitats, except at highest elevations. Diagnostics: The hairs are unicellular and medifixed (stellate in Thryallis). Leaves are simple and opposite, commonly stipulate. Sepals Stigmaphyllon ciliatum (photo: S. G. Weller) commonly bearing a pair of large oil glands; petals clawed; androecium, with some exceptions, comprises 10 stamens; gynoecium as a rule is 3-carpellate with usually three styles. In the majority of genera, fruits break into three samaras or mericarps. General Characters 1. STEMS1. Stems are terete (fig. 1a-e), lobed (fig. 1i, k; 2f, k), asymmetrically lobed (fig. 1g, h, j; 2b, e, i) or less often flattened or 4-angled (fig. 1l); straight (fig. 3a) or twisted (fig. 3b, e, f), from < 1 cm to 30 cm in diam. (fig. 3f) and up to 30–40 m long. Bark is usually smooth, grayish and lenticellate (fig. 3a), or dark gray and shaggy or corky in species of Diplopterys (fig. 3d), Peixotoa (fig. 1i), and Stigmaphyllon (fig. 3c). Stems with regular secondary growth are found in several genera; of these species of Adelphia, Aenigmatanthera, Amorimia, Heteropterys, Stigmaphyllon (fig. -
Pnas200910155 6388..6393
Floral symmetry genes and the origin and maintenance of zygomorphy in a plant- pollinator mutualism Wenheng Zhang, Elena M. Kramer, and Charles C. Davis1 Department of Organismic and Evolutionary Biology, Harvard University Herbaria, Cambridge, MA 02138 Edited by Michael J. Donoghue, Yale University, New Haven, CT, and approved February 10, 2010 (received for review September 8, 2009) The evolution of floral zygomorphy is an important innovation in provides the bees access to oil glands, which are borne in pairs on flowering plants and is thought to arise principally from special- the abaxial surface of the sepals. The stereotypical floral mor- ization on various insect pollinators. Floral morphology of neo- phology of New World Malpighiaceae, despite tremendous var- tropical Malpighiaceae is distinctive and highly conserved, especially iation in vegetative and fruit morphology, led Anderson (9) to with regard to symmetry, and is thought to be caused by selection hypothesize that floral uniformity in the group results from their by its oil-bee pollinators. We sought to characterize the genetic specialization on these oil-bee pollinators. basis of floral zygomorphy in Malpighiaceae by investigating Interpreting the origin and maintenance of this unique floral CYCLOIDEA2-like (CYC2-like) genes, which are required for estab- morphology in a comparative evolutionary framework, however, lishing symmetry in diverse core eudicots. We identified two copies has remained elusive, in large part because of our lack of of CYC2-like genes in Malpighiaceae, which resulted from a gene understanding of the closest phylogenetic relatives of Malpigh- duplication in the common ancestor of the family. A likely role for iaceae. -
Supporting Information
Supporting Information Zhang et al. 10.1073/pnas.0910155107 SI Materials and Methods sequence variation across a diverse set of taxa. One set of nested Morphology-Based Character State Reconstruction of Floral degenerate primers (i.e., the forward primer located in the TCP Symmetry. We used maximum likelihood (ML) character state domain, 5′-GCIMGIAARTTYTTYGAYYTKCAA, and the re- reconstruction as implemented in Mesquite version 2.6 (1) to verse primer in the R domain, 5′-GCYCKYGCYCTIGCY- infer the evolution of floral symmetry in Malpighiaceae and its YTHKCYCTWGA), was selected to amplify a 350- to 400-bp closest relatives, Elatinaceae and Centroplacaceae. Floral mor- fragment of the CYC2-like genes from Malpighiaceae and its sister phology for 353 species was scored as either zygomorphic or clades. Gel-purified PCR products were cleaned and cloned. Fifty actinomorphic and treated as unordered and optimized onto the to 200 colonies were initially screened by restriction site analysis, rate-smoothed topology for the family (2, 3). Absolute di- and at least five clones were sequenced for each variant identified vergence time estimates were ascertained using the methods using this initial screen. Our criteria to further distinguish these described by Davis et al. (4, 5) and included nearly one quarter variants included the degree of nucleotide variability and the of all species of Malpighiaceae, plus numerous outgroup species presence of unique indels. Sequence variants containing no indels of Elantinaceace and Centroplacaceae. These data were ana- and differing by less than 5% sequence similarity were treated as lyzed using the Mk1 model (6) with rate parameters estimated alleles. -
The Origin of the Malpighiaceae-The Evidence from Morphology
DECEMBER I99O MEMOIRS OF THE NEW YORK BOTANICAL GARDEN 64:21V224 The Origin of the Malpighiaceae-The Evidence from Morphology Wrrlnu R. AwoeRSoN Abstract ANoensoN, W. R. (University of Michigan Herbarium, North University Building, Ann Arbor, MI 48109-1057, U.S.A.). The origin of the Malpighiaceae-The evidence from morphology. Mem. New York Bot. Gard. 64: 210-224. 1990. The Malpighiaceae are a family of some 1200 flowering plants, of which 850/oare neotropical and the rest paleotropical. Their habits and fruits are very diverse, especially in the New World, while the flowers are relatively uniform. Calyx glands in most neotropical species secrete oils gathered by polli- nating bees, but the glands present on the sepals of four genera in the Old World, where the oil-bees that visit malpighs do not occur, produce sugary nectar similar to that produced by the anatomically similar extrafloral nectaries found on foliar organs in both hemispheres. The inflorescence in most Malpighiaceae is based on single-flowered units, but in ten neo- tropical genera those units may be cymules. Among diverse pollen types the ancestral condition seems to be colporate. A hypothetical ancestor based on characters that hardly vary supports Engler's view that the Trigoniaceae and Vochysiaceae are the families closest to the Malpighiaceae. An analysis utilizing them as outgroups leads to the conclusion that the likeliest ancestral character-states (inflorescence of cymules, colporate pollen, and dry dehiscent fruits) are heavily concentrated in the New World subfamily Byrsonimoideae, hence my "American" hypothesis that the family originated in the New World in effective isolation from the Old World.