Regulatory Links Between Imprinted Genes: Evolutionary Predictions and Consequences

Research outputs

Listing of Research outputs

Regulatory links between imprinted genes: Evolutionary predictions and consequences

Patten, M. M., Cowley, M.,

Oakey, R. J.

& Feil, R.

3 Feb 2016

Proceedings of the Royal Society B: Biological Sciences.

, 20152760

Research output

Contribution to journal

Article

Network-informed gene ranking tackles genetic heterogeneity in exome-sequencing studies of monogenic disease

Dand, N.

Schulz, R.

Weale, M. E.

Southgate, L.

Oakey, R. J.

Simpson, M. A.

Schlitt, T.

1 Dec 2015

Human Mutation.

p. 1135-1144

Research output

Article

Genome-wide methylation analysis in Silver-Russell syndrome patients

Prickett, A. R.

, Ishida, M.,

Böhm, S.

, Frost, J. M.,

Puszyk, W.

, Abu-Amero, S., Stanier, P.,

Schulz, R.

, Moore, G. E. &

Oakey, R. J.

Mar 2015

Human genetics.

p. 317-32

Research output

Article

Imprinted gene expression in hybrids: perturbed mechanisms and evolutionary implications

Wolf, J. B.,

Oakey, R. J.

& Feil, R.

Aug 2014

Heredity.

p. 167-175

Research output

Article

Developmental Programming Mediated by Complementary Roles of Imprinted Grb10 in Mother and Pup

Cowley, M.

, Garfield, A. S., Madon-Simon, M., Charalambous, M., Clarkson, R. W., Smalley, M. J., Kendrick, H., Isles, A. R., Parry, A. J., Carney, S.,

Oakey, R. J.

, Heisler, L. K., Moorwood, K., Wolf, J. B. & Ward, A.

25 Feb 2014

PL o S Biology.

, e1001799

Research output

Article

Genomewide and parental allele-specific analysis of CTCF and cohesin DNA binding in mouse brain reveals a tissue-specific binding pattern and an association with imprinted differentially methylated regions

Prickett, A. R.

Barkas, N.

McCole, R. B.

Hughes, S.

Amante, S. M.

Schulz, R.

Oakey, R. J.

Oct 2013

Genome Research.

p. 1624-1635

Research output

Article

The epigenetic regulator PLZF represses L1 retrotransposition in germ and progenitor cells

Puszyk, W.

, Down, T.,

Grimwade, D.

, Chomienne, C.,

Oakey, R. J.

Solomon, E.

Guidez, F.

3 Jul 2013

The EMBO journal.

p. 1941-1952

Research output

Article

Transposable Elements Re-Wire and Fine-Tune the Transcriptome

Cowley, M.

Oakey, R. J.

24 Jan 2013

PL o S Genetics.

p. N/A

, e1003234

Research output

Literature review

Resetting for the Next Generation

Cowley, M.

Oakey, R. J.

28 Dec 2012

MOLECULAR CELL.

p. 819-821

Research output

Editorial

Epigenetic control of alternative mRNA processing at the imprinted Herc3/Nap1l5 locus

Cowley, M.

Wood, A. J.

Böhm, S.

Schulz, R.

Oakey, R. J.

Oct 2012

Nucleic Acids Research.

p. 8917-8926

Research output

Article

Protection against De Novo Methylation Is Instrumental in Maintaining Parent-of-Origin Methylation Inherited from the Gametes

Proudhon, C., Duffié, R., Ajjan, S.,

Cowley, M.

, Iranzo, J., Carbajosa, G.,

Saadeh, H.

, Holland, M. L.,

Oakey, R. J.

, Rakyan, V. K.,

Schulz, R.

& Bourc'his, D.

28 Sep 2012

MOLECULAR CELL.

p. 909–920

Research output

Article

A survey of tissue-specific genomic imprinting in mammals

Prickett, A. R.

Oakey, R. J.

Aug 2012

Molecular Genetics and Genomics: an international journal.

p. 621-630

Research output

Article

Human imprinted retrogenes exhibit non-canonical imprint chromatin signatures and reside in non- imprinted host genes

Monk, D., Arnaud, P., Frost, J. M.,

Wood, A. J.

Cowley, M.

, Martin-Trujillo, A., Guillaumet-Adkins, A., Platas, I. I., Camprubi, C., Bourc'his, D., Feil, R., Moore, G. E. &

Oakey, R. J.

Jun 2011

p. 4577 - 4586

Research output

Article

A CASE-BY-CASE EVOLUTIONARY ANALYSIS OF FOUR IMPRINTED RETROGENES

McCole, R. B., Loughran, N. B., Chahal, M., Fernandes, L. P.,

Roberts, R. G.

Fraternali, F.

, O'Connell, M. J. &

Oakey, R. J.

May 2011

EVOLUTION.

p. 1413 - 1427

Research output

Article

The role of imprinted genes in humans

Moore, G. &

Oakey, R.

21 Mar 2011

GENOME BIOLOGY.

Research output

Editorial

Short Interspersed Element (SINE) Depletion and Long Interspersed Element (LINE) Abundance Are Not Features Universally Required for Imprinting

Cowley, M.

, de Burca, A., McCole, R. B., Chahal, M., Saadat, G.,

Oakey, R. J.

Schulz, R.

PL o S One .

, e18953

Research output

Article

The Parental Non-Equivalence of Imprinting Control Regions during Mammalian Development and Evolution

Schulz, R.

, Proudhon, C., Bestor, T. H.,

Woodfine, K.

, Lin, C-S., Lin, S-P., Prissette, M.,

Oakey, R. J.

& Bourc'his, D.

Nov 2010

PL o S Genetics.

, e1001214

Research output

Article

Segmental Paternal Uniparental Disomy (patUPD) of 14q32 With Abnormal Methylation Elicits the Characteristic Features of Complete patUPD14

Irving, M.

, Buiting, K., Kanber, D., Donaghue, C.,

Schulz, R.

, Offiah, A.,

Mohammed , S.

Oakey, R. J.

Aug 2010

American Journal of Medical Genetics. Part A.

p. 1942 - 1950

Research output

Article

Retrotransposition and genomic imprinting

Cowley, M.

Oakey, R. J.

29 Jun 2010

Briefings In Functional Genomics.

p. 340 - 346

, elq015

Research output

Article

Transcriptional profiles underlying parent-of-origin effects in seeds of Arabidopsis thaliana

Tiwari, S., Spielman, M.,

Schulz, R.

Oakey, R. J.

, Kelsey, G., Salazar, A., Zhang, K., Pennell, R. & Scott, R. J.

20 Apr 2010

Bmc Plant Biology.

Research output

Article

Jagged1 is a competitive inhibitor of Notch signaling in the embryonic pancreas

Golson, M. L., Le Lay, J., Gao, N., Braemswig, N., Loomes, K. M.,

Oakey, R.

, May, C. L., White, P. & Kaestner, K. H.

Aug 2009

Mechanisms of Development.

p. 687 - 699

Research output

Article

Ductal Malformation and Pancreatitis in Mice Caused by Conditional Jag1 Deletion

Golson, M. L., Loomes, K. M.,

Oakey, R.

& Kaestner, K. H.

May 2009

Gastroenterology.

p. 1761 - 1771

Research output

Article

Genomic imprinting in Singapore Workshop on Genomic Imprinting

Loppin, B. &

Oakey, R.

EMBO REPORTS.

p. 222 - 227

Research output

Editorial

Transcript- and tissue-specific imprinting of a tumour suppressor gene

Schulz, R.

, McCole, R. B.,

Woodfine, K.

Wood, A. J.

, Chahal, M., Monk, D., Moore, G. E. &

Oakey, R. J.

Human Molecular Genetics.

p. 118 - 127

Research output

Article

MATERNALLY EXPRESSED PAB C-TERMINAL, a Novel Imprinted Gene in Arabidopsis, Encodes the Conserved C-Terminal Domain of Polyadenylate Binding Proteins

Tiwari, S.,

Schulz, R.

, Ikeda, Y., Dytham, L., Bravo, J., Mathers, L., Spielman, M., Guzman, P.,

Oakey, R. J.

, Kinoshita, T. & Scott, R. J.

Sep 2008

Plant Cell.

p. 2387 - 2398

Research output

Article

Unwitting hosts fall victim to imprinting

McCole, R. B. &

Oakey, R. J.

Sep 2008

Epigenetics.

p. 258 - 260

Research output

Article

Regulation of alternative polyadenylation by genomic imprinting

Wood, A. J.

Schulz, R.

Woodfine, K.

, Koltowska, K., Beechey, C. V., Peters, J., Bourc'his, D. &

Oakey, R. J.

1 May 2008

Genes and Development.

p. 1141 - 1146

Research output

Article

WAMIDEX: A web atlas of murine genomic imprinting and differential expression.

Schulz, R.

Woodfine, K.

Menheniott, T.

, Bourc'his, D., Bestor, T. &

Oakey, R. J.

Mar 2008

Epigenetics.

p. 89 - 96

Research output

Article

G9a histone methyltransferase contributes to imprinting in the mouse placenta

Wagschal, A., Sutherland, H. G.,

Woodfine, K.

, Henckel, A., Chebli, K.,

Schulz, R.

Oakey, R. J.

, Bickmore, W. A. & Feil, R.

Feb 2008

Molecular and Cellular Biology.

p. 1104 - 1113

Research output

Article

Genomic imprinting of Dopa decarboxylase in heart and reciprocal allelic expression with neighboring Grb10

Menheniott, T. R.

Woodfine, K.

Schulz, R.

Wood, A. J.

, Monk, D., Giraud, A. S., Baldwin, H. S., Moore, G. E. &

Oakey, R. J.

Jan 2008

p. 386 - 396

Research output

Article

Allele-specific demethylation at an imprinted mammalian promoter

Wood, A. J.

, Bourc'his, D., Bestor, T. H. &

Oakey, R. J.

Nov 2007

p. 7031 - 7039

Research output

Article

Bile duct proliferation in liver-specific Jag1 conditional knockout mice: Effects of gene dosage

Loomes, K. M., Russo, P., Ryan, M., Nelson, A., Underkoffler, L., Glover, C., Fu, H., Gridley, T., Kaestner, K. H. &

Oakey, R. J.

Feb 2007

Hepatology.

p. 323 - 330

Research output

Article

A screen for retrotransposed imprinted genes reveals an association between X chromosome homology and maternal germ-line methylation.

Wood, A. J.

Roberts, R. G.

, Monk, D., Moore, G. E.,

Schulz, R.

Oakey, R. J.

PL o S Genetics.

p. 192 - 203

Research output

Article

Nondisjunction and transmission ratio distortion of Chromosome 2 in a (2.8) Robertsonian translocation mouse strain

Schulz, R.

, Underkoffler, L. A., Collins, J. N. &

Oakey, R. J.

Mar 2006

Mammalian Genome.

p. 239 - 247

Research output

Article

Chromosome-wide identification of novel imprinted genes using microarrays and uniparental disomies

Schulz, R.

Menheniott, T. R.

Woodfine, K.

Wood, A. J.

Choi, J. D.

Oakey, R. J.

p. e88

Research output

Article

Genomic imprinting in mammals: Emerging themes and established theories

Wood, A. J. &

Oakey, R. J.

PL o S Genetics.

p. 1677 - 1685

, e147

Research output

Literature review

A novel variant of Inpp5f is imprinted in brain and its expression is correlated with differential methylation of an internal exonic CpG island.

Choi, J.

, Underkoffler, L.,

Wood, A.

, Collins, J., Williams, P., Golden, J.,

Shuster, E.

, Loomes, K. &

Oakey, R.

Jul 2005

p. 5514 - 5522

Research output

Article

Transmission ratio distortion in offspring of mouse heterozygous carriers of a (7.18) Robertsonian translocation

Underkoffler, L. A., Mitchell, L. E., Abdulali, Z. S., Collins, J. N. &

Oakey, R. J.

Feb 2005

Genetics.

p. 843 - 848

Research output

Article

Imprinted gene detection in Arabidopsis thaliana.

Schulz, R.

, Tiwari, S., Scott, R. &

Oakey, R.

Unknown.

Paris:

Unknown Publisher

Research output

Chapter in Book/Report/Conference proceeding

Conference paper

Facial features in Alagille syndrome

Kamath, B. M., Loomes, K. M., Piccoli, D. A., Emerick, K. E. M.,

Oakey, R. J.

, Spinner, N. B. & Krantz, I. D.

15 Jan 2004

American Journal of Medical Genetics.

p. 222 - 223

Research output

Letter

Familial basaloid follicular hamartoma: lesional characterization and review of the literature

Jih, D. M., Shapiro, M., James, W. D., Levin, M., Gelfand, J., Williams, P. T.,

Oakey, R. J.

, Fakharzadeh, S. & Seykora, J. T.

Apr 2003

American Journal of Dermatopathology.

p. 130 - 137

Research output

Article

An Application of Molecular Genotyping in Mice

Underkoffler, L. A., Collins, J. N.,

Choi, J. D.

Oakey, R. J.

BIOLOGICAL PROCEDURES ONLINE.

p. 116 - 122

Research output

Article

Supernumerary digital flexion creases: an additional clinical manifestation of Alagille syndrome

Kamath, B. M., Loomes, K. M.,

Oakey, R. J.

& Krantz, I. D.

1 Nov 2002

p. 171 - 175

Research output

Article

Characterization of Notch receptor expression in the developing mammalian heart and liver

Loomes, K. M., Taichman, D. B., Glover, C. L., Williams, P. T., Markowitz, J. E., Piccoli, D. A., Baldwin, H. S. &

Oakey, R. J.

1 Oct 2002

p. 181 - 189

Research output

Article

Facial features in Alagille syndrome: specific or cholestasis facies?

Kamath, B. M., Loomes, K. M.,

Oakey, R. J.

, Emerick, K. E., Conversano, T., Spinner, N. B., Piccoli, D. A. & Krantz, I. D.

1 Oct 2002

p. 163 - 170

Research output

Article

Notch1 and Jagged1 expression by the developing pulmonary vasculature

Taichman, D. B., Loomes, K. M., Schachtner, S. K., Guttentag, S., Vu, C., Williams, P.,

Oakey, R. J.

& Baldwin, H. S.

1 Oct 2002

Developmental Dynamics.

p. 166 - 175

Research output

Article

Imprinted genes: identification by chromosome rearrangements and post-genomic strategies

Oakey, R. J.

& Beechey, C. V.

1 Jul 2002

Trends in Genetics.

p. 359 - 366

Research output

Literature review

Molecular analysis of nondisjunction in mice heterozygous for a robertsonian translocation

Underkoffler, L. A., Mitchell, L. E., Localio, A. R., Marchegiani, S. M., Morabito, J., Collins, J. N. &

Oakey, R. J.

Genetics.

p. 1219 - 1224

Research output

Article

Regulation of vascular smooth muscle cell growth and adhesion by paired-related homeobox genes.

Jones, F. S., McKean, D. M., Meech, R., Edelman, D. B.,

Oakey, R. J.

& Jones, P. L.

Chest.

p. 89S - 90S

Research output

Conference paper

Prx1 controls vascular smooth muscle cell proliferation and tenascin-C expression and is upregulated with Prx2 in pulmonary vascular disease

Jones, F. S., Meech, R., Edelman, D. B.,

Oakey, R. J.

& Jones, P. L.

20 Jul 2001

Circulation Research.

p. 131 - 138

Research output

Article

Microarray expression profiling of tissues from mice with uniparental duplications of chromosomes 7 and 11 to identify imprinted genes

Choi, J. D.

, Underkoffler, L. A., Collins, J. N., Marchegiani, S. M., Terry, N. A., Beechey, C. V. &

Oakey, R. J.

Mammalian Genome.

p. 758 - 764

Research output

Article

The expression of Jagged1 in the developing mammalian heart correlates with cardiovascular disease in Alagille syndrome

Loomes, K. M., Underkoffler, L. A., Morabito, J., Gottlieb, S., Piccoli, D. A., Spinner, N. B., Baldwin, H. S. &

Oakey, R. J.

Dec 1999

p. 2443-9

Research output

Article

Mouse chromosome 7

Williams, R. W., Angel, J. M., Holdener, B. C.,

Oakey, R.

& Hunter, K. W.

Oct 1999

Mammalian Genome.

p. 947

Research output

Article

Characterization of CDC45L: a gene in the 22q11.2 deletion region expressed during murine and human development

Shaikh, T. H., Gottlieb, S., Sellinger, B., Chen, F., Roe, B. A.,

Oakey, R. J.

, Emanuel, B. S. & Budarf, M. L.

Mar 1999

Mammalian Genome.

p. 322-326

Research output

Article

Goosecoid-like, a gene deleted in DiGeorge and velocardiofacial syndromes, recognizes DNA with a bicoid- like specificity and is expressed in the developing mouse brain

Gottlieb, S., Hanes, S. D., Golden, J. A.,

Oakey, R. J.

& Budarf, M. L.

Sep 1998

p. 1497-505

Research output

Article

A very large protein with diverse functional motifs is deficient in rjs (runty, jerky, sterile) mice

Lehman, A. L., Nakatsu, Y., Ching, A., Bronson, R. T.,

Oakey, R. J.

, Keiper-Hrynko, N., Finger, J. N., Durham-Pierre, D., Horton, D. B., Newton, J. M., Lyon, M. F. & Brilliant, M. H.

4 Aug 1998

Proceedings of the National Academy of Sciences of the United States of America.

p. 9436-9441

Research output

Article

Encyclopedia of the mouse genome VII. Mouse chromosome 7

Williams, R. W., Holdener, B. C., Angel, J. M.,

Oakey, R.

& Hunter, K. W.

Mammalian Genome.

8 Spec No

p. S136-59

Research output

Article

Molecular analysis of the cDNAs encoded by the pun and pJ alleles of the pink-eyed dilution locus

Oakey, R.

, Keiper, N. M., Ching, A. S. & Brilliant, M. H.

Apr 1996

Mammalian Genome.

p. 315-6

Research output

Article

Nondisjunction rates and abnormal embryonic development in a mouse cross between heterozygotes carrying a (7, 18) robertsonian translocation chromosome

Oakey, R.

, Matteson, P. G., Litwin, S., Tilghman, S. M. & Nussbaum, R. L.

Oct 1995

Genetics.

p. 667-74

Research output

Article

Mouse chromosome 7

Brilliant, M. H., Williams, R. W., Conti, C. J., Angel, J. M.,

Oakey, R. J.

& Holdener, B. C.

Mammalian Genome.

5 Spec No

p. S104-23

Research output

Article

Localization of DNA sequences required for human centromere function through an analysis of rearranged Y chromosomes

Tyler-Smith, C.,

Oakey, R. J.

, Larin, Z., Fisher, R. B.,

Crocker, M.

, Affara, N. A., Ferguson-Smith, M. A., Muenke, M., Zuffardi, O. & Jobling, M. A.

Dec 1993

Nature Genetics.

p. 368-75

Research output

Article

Construction of a physical map on mouse and human chromosome 1: comparison of 13 Mb of mouse and 11 Mb of human DNA

Oakey, R.

, Watson, M. L. & Seldin, M. F.

Nov 1992

p. 613-620

Research output

Article

A linkage map of mouse chromosome 19: definition of comparative mapping relationships with human chromosomes 10 and 11 including the MEN1 locus

Rochelle, J. M., Watson, M. L.,

Oakey, R. J.

& Seldin, M. F.

Sep 1992

Genomics.

p. 26-31

Research output

Article

Chromosomal mapping of the human (MACS) and mouse (Macs) genes encoding the MARCKS protein

Blackshear, P. J., Tuttle, J. S.,

Oakey, R. J.

, Seldin, M. F., Chery, M., Philippe, C. & Stumpo, D. J.

Sep 1992

Genomics.

p. 168-174

Research output

Article

Chromosomal mapping of the high affinity Fc gamma receptor gene

Oakey, R. J.

, Howard, T. A., Hogarth, P. M., Tani, K. & Seldin, M. F.

Mar 1992

Immunogenetics.

p. 279-282

Research output

Article

A linkage map of mouse chromosome 1 using an interspecific cross segregating for the gld autoimmunity mutation

Watson, M. L., D'Eustachio, P., Mock, B. A., Steinberg, A. D., Morse, H. C.,

Oakey, R. J.

, Howard, T. A., Rochelle, J. M. & Seldin, M. F.

Mammalian Genome.

p. 158-71

Research output

Article

The human TTP protein: sequence, alignment with related proteins, and chromosomal localization of the mouse and human genes

Taylor, G. A., Lai, W. S.,

Oakey, R. J.

, Seldin, M. F., Shows, T. B., Eddy, R. L. & Blackshear, P. J.

25 Jun 1991

p. 3454

Research output

Article

Genomic organization of adrenergic and serotonin receptors in the mouse: linkage mapping of sequence- related genes provides a method for examining mammalian chromosome evolution

Oakey, R.

, Caron, M. G., Lefkowitz, R. J. & Seldin, M. F.

Jun 1991

Genomics.

p. 338-44

Research output

Article

Y chromosome DNA haplotyping suggests that most European and Asian men are descended from one of two males

Oakey, R.

& Tyler-Smith, C.

Jul 1990

Genomics.

p. 325-30

Research output

Article

Analysis of transcription initiation in the Panolis flammea nuclear polyhedrosis virus polyhedrin gene

Oakey, R., Cameron, I. R., Davis, B., Davis, E., Possee, R. D. &

Oakey, R.

Mar 1989

Journal of General Virology.

p. 769-775

Research output

Article

The above report is produced using the following setup

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