Genetic and Biochemical Mechanisms O F Pollen Wall Development

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Genetic and Biochemical Mechanisms O F Pollen Wall Development

Supplementary Material Genetic and Biochemical Mechanisms of Pollen Wall Development Jianxin Shi1, Meihua Cui1, Li Yang1, Yu-Jin Kim1,2, Dabing Zhang1,3 1Joint International Research Laboratory of Metabolic & Developmental Sciences, SJTU-University of Adelaide Joint Centre for Agriculture and Health, School of Life Sciences and Biotechnology, Shanghai Jiao Tong University, 800 Dongchuan Rd., Shanghai 200240, China 2Department of Oriental Medicinal Biotechnology and Graduate School of Biotechnology, College of Life Science, Kyung Hee University, Youngin, 446-701, South Korea 3School of Agriculture, Food and Wine, University of Adelaide, South Australia 5064, Australia Corresponding author: Zhang, D. ([email protected])

Table S1. Genes Known to be Involved In The Formation Of Plant Pollen Wall

Gene name in Path-ways and Gene name in Gene expression rice or other Protein encoded Protein function Refs. net-works Arabidopsis pattern species Highly expressed in meiocytes, Callose Synthase Essential for the tetrads 5/Glucan Callose synthase synthesis of microspores and [S1] Synthase-Like 2 callose mature pollen, as (CalS5/GSL2) well as other organs

AtGSL1 (CalS11) Responsible for Root, leaf, stem, and AtGSL5 Callose synthase the formation of [S2] flower and silique (CalS12) the callose wall

Highest levels of Callose Essential for expression in biosynthesis and Rice: Glucan microspore tapetum, degradation Synthase-Like 5 Callose synthase development [S3] meiocytes, tetrads, (GSL5) during late meiosis microspores and and male fertility mature pollen.

Brassica napus: Similar to β-1,3- Part of the callase A6 Tapetum-specific [S4] A6 glucanases enzyme complex

Germinated Essential for timely seedlings, roots, callose leaf sheaths, leaf Rice: OsG1 β-1,3-glucanases degradation in the [S5] blades, and pooled process of tetrad florets at various dissolution stages

Primexine DEFECTIVE in Is required for formation EXINE Calcium-binding Throughout the exine pattern [S6] FORMATION1 protein plant formation (DEX1)

NO EXINE Plastid integral Maintains the Buds, siliques, [S7] FORMATION1 membrane protein envelope integrity stems and roots (NEF1) in the plastids Exine pattern Microspores and RUPTURED MtN3/saliva family formation and tapetum POLLEN GRAIN 1 [S8, S9] protein primexine (RPG1) deposition during meiosis

RUPTURED Functions MtN3/saliva family Tapetum and POLLEN GRAIN 1 redundantly with [S9] protein microspores (RPG2) RPG1

Plays a vital role in NO PRIMEXINE primexine AND PLASMA deposition and Microspores and MEMBRANE Membrane protein plasma membrane [S10] the tapetum UNDULATION undulation during (NPU) early pollen wall development.

Required for pollen exine formation and male fertility Microsporocytes, Exine Formation DNA via the regulation tetrads and the [S11] Defect (EFD) methyltransferase of callose wall and tapetum primexine formation

Biosynthesis of Regulates the sporopollenin production of key ATP- AtAPY6 and polysaccharides Mature pollen diphosphohydrolas [S12] AtAPY7 needed for proper grains es assembly of the exine layer

AtACBP4 and AtACBP6: pollen AtACBP4, Affects Acyl-CoA-binding grains. AtACBP5 and sporopollenin and [S13] proteins AtACBP5:microspo AtACBP6 tryphine synthesis res and tapetal cells

Synthesis of arabinan side Rice: UDP- Pistil, anther, UDP- chains of Arabinopyranose palea, lamma, root, Arabinopyranose rhamnogalacturon [S14] Mutase 3 leaf sheath, Mutase an-I is essential for (OsUAM3) internode and leaf pollen wall formation

Tapetum and Rice: DEFECTIVE shortly after MALE STERILITY Fatty acyl carrier Required for pollen POLLEN WALL release of [S15] 2 (MS2) protein reductase exine development (DPW) microspore from tetrad

Catalyzes in-chain Mid-chain fatty acid hydroxylation of Tapetum and CYP703A2 Rice: CYP703A3 [S16, S17] hydroxylase saturated medium- microspore specific chain fatty acids

Catalyzes v- hydroxylation of long-chain fatty Fatty acid ω- CYP704B1 Rice: CYP704B2 acids, implicating Anther-specific [S18, S19] hydroxylase these molecules in sporopollenin synthesis

Acyl-CoA Acyl-CoA synthase Required for Tapetum-specific [S20] Synthase 5 gene sporopollenin (ACOS5) monomer biosynthesis Required for pollen At polyketide Polyketide development and synthases Tapetum-specific [S21] synthases sporopollenin (AtPKSA/LAP5) biosynthesis

Required for pollen At polyketide Polyketide development and synthases Tapetum-specific [S21] synthases sporopollenin (AtPKSB/LAP6) biosynthesis

Tetraketide α- Sporopollenin Tetraketide α- pyrone reductase monomer Tapetum-specific [S22] pyrone reductase 1 1 (TKPR1) biosynthesis

Tetraketide α- Sporopollenin Tetraketide α- pyrone reductase monomer Tapetum-specific [S22] pyrone reductase 2 2 (TKPR2) biosynthesis

Epicuticular wax ECERIFERUM 1 Integral membrane and tryphine Mainly in stem, fruit [S23] (CER1) protein alkane and leaf biosynthesis

Play a role in the synthesis of the components of Buds, open Faceless Pollen 1 Aldehyde tryphine, flowers, siliques, [S24] (FLP1)/CER3 decarboxylase sporopollenin of stems, leaves but exine and the wax not roots of stems and siliques

Tryphine Importance for formation Fatty acid cuticle formation Tapetum and CER2-LIKE2 [S25] elongase and pollen coat microspores function

LACS1 and Long-chain acyl- Production of Anther-specific [S26] LACS4 CoA synthetases tryphine lipids expression

Affects oil bodies formation in the tapetosomes of Phosphoserine tapetalcells which, Microspore and PSP1 [S27] phosphatase in turn, may tapetal cell influence microspore pollen coat formation

Intine Involved in development Fasciclin-like microspore Pollen grains and FLA3 arabinogalactan development and [S28] tubes proteins may affect pollen intine formation

Critical role in Inflorescence, Sugar pyrophos- AtUSP pollen particularly in [S29] phorylase development. pollen grains

Rice: Essential for intine GLYCOSYLTRAN Glycosyl- construction and Mature pollen [S30] SFERASE1 transferases pollen maturation (OsGT1)

Rice: Cell wall COLLAPSED Arabinokinase-like Tapetum and polysaccharides [S31] ABNORMAL protein microspores synthesis POLLEN1 (CAP1)

Brassica Pectatelyase-like Intine and tryphine Microspores and [S32] campestris: 10 formation pistils BcPLL10 Brassica campestris: Pectatelyase-like 9 Intine formation Pollen and pistils [S33] BcPLL9

Modulate the physical nature of Brassica Arabinogalactan the pollen wall and Pollen grains and campestris: [S34] protein the integrity of the pollen tubes BcMF8 pollen tube wall matrix.

Brassica Participate in the BcMF26a: pistil campestris: construction of Polygalacturonase pollen wall by BcMF26b: [S35] BcMF26a and modulating intine tapetum, pollen BcMF26b information grains, and pistils

Affects formation of the pollen intine at Pollen grains at the Brassica oleracea: Polygalacturonase the late stage of mature pollen [S36] BoMF25 pollen stage development

Transfer of sporopollenin lipid ATP binding precursors from ABCG26 cassette tapetal cells to Tapetum [S37, S38] transporter anther locules, facilitating exine formation

ATP binding ABCG9 and Pollen coat cassette Tapetum [S39] ABCG31 deposition transporter

ATP binding ABCG1 and Transport lipid cassette Tapetum [S40] ABCG16 precursors transporter

ATP binding Rice: Sporopollenin Preferentially in the cassette [S41, S42] OsABCG15/PDA1 transfer tapetum transporter Transporters type III LTPs Transport Lipid transfer (LTP6, LTP9 and sporopollenin Tapetum [S43] proteins LTP14) precursors

Plays a crucial role Mainly in tapetum Lipid transfer in the development Rice: OsC6 and weakly in [S44] protein of lipidic orbicules microspore and pollen exine

Magnesium Magnesium transporter and Notably in pollen AtMGT4 [S45] transporter essential for pollen grains development

Biosynthesis REPRESSOR OF sporopollenin or Strongly expressed CYTOKININ Nucleotide sugar polysaccharide- in the shoot apical [S46] DEFICIENCY 1 transporter containing meristem and (ROCK1) primexine young flowers formation

Transcription ABORTED Rice: TAPETUM bHLH transcription A master regulator Tapetum [S47, S48, S49] factors MICROSPORES DEGERATION factor of pollen wall (AMS) RETARDATION formation by (TDR) directly regulating biosynthetic pathways A crucial component of a DYSFUNCTIONAL Rice: Undeveloped bHLH transcription genetic network Preferentially in TAPETUM 1 Tapetum1 (UDT1) [S50, S51, S52] factor that controls anther tapetal cells (DYT1) Tomato: MS1035 development and function

Promotes aspartic Rice: ETERNAL proteases to TAPETUM 1 bHLH transcription trigger plant Tapetum [S53, S54] (EAT1)/ factor programmed cell bHLH141/DTD death

Promotes tapetal PCD and Rice: TDR Endothecium, bHLH transcription degeneration of INTERACTING middle layer, and [S55, S56] factor callose PROTEIN2 (TIP2) tapetum surrounding the microspores

Defective in Play a vital role in Highly expressed Tapetal MYB transcription tapetal in the tapetum, [S57] Development and factor differentiation and meiocytes and Function 1 (TDF1) function microspores

Involved in tapetum and pollen development and Tapetum, middle AtMYB103/MYB80 MYB transcription is required for the layers and [S58, S59, S60, /MS188 factor regulation of developing S61] tapetal microspores programmed cell death

Functions as a GA Tapetum and faint MYB transcription signaling factor in in anther wall Rice: GAMYB [S62, S63] factor anther layers and development microspore

Controls lipid bZIP transcription AtbZIP34 metabolism and/or Anthers and pistils [S64] factor cellular transport

Modify the Rice: transcription of PERSISTENT tapetal-specific TAPETAL CELL1 genes implicated in Specifically in (PTC1) pollen wall MALE STERILITY PHD finger motif tapetum shortly Petunia: development and [S65, S66, S67] 1 (MS1) transcription factor after microspore TAPETUM control tapetal release from tetrad DEVELOPMENT development by ZINC FINGER directly regulating PROTEIN1 (TAZ1) tapetal PCD and breakdown.

CALLOSE Regulates callose DEFECTIVEMICR CCCH-type zinc Meiocytes and the metabolism during [S68] OSPORE1 finger protein tapetum microsporogenesis (CDM1)

Stems and buds Involved in miRNA (microsporocytes CCCH zinc finger maturation and AtTTP and tapetal cells), [S69] protein pollen wall pattern weak expression in formation roots and leaves

WRKY34 and WRKY Required for male Pollen-specific [S70] WRKY2 transcription factor gametogenesis

Other regulators TRANSPOSABLE AT-hook family Determines nexine Tapetum [S71] ELEMENT protein formation SILENCING VIA AT-HOOK (TEK) Essential for pollen AUXIN Microsporocytes wall patterning by RESPONSE Auxin response and modulating [S72] FACTOR17 factor microgametophyte primexine (ARF17) s formation

Affected the timing RESPIRATORY- of tapetal PCD and BURST OXIDASE NADPH oxidase resulted in aborted Tapetal layer [S73] HOMOLOG E male (RBOHE) gametophytes

Regulates pre- Preferentially CYCLIN- mRNA splicing of expressed in leaf DEPEDENT Cyclin-dependent CALLOSE and inflorescence [S74] KINASE G1 protein kinase SYNTHASE5 and weakly (CDKG1) (CalS5) and pollen expressed wall formation in the other tissues

Arabidopsis Highly expressed Shaggy-like Shaggy-like protein Essential for pollen in floral buds [S75] protein kinases β kinases development especially in floral (ASKβ) stage 13-16

SIDECAR Plays a role in the POLLEN/LATERA male gametophyte Preferentially L ORGAN LBD transcription function primarily expressed in [S76] BOUNDARIES factors at germ cell pollen DOMAIN 10 mitosis. (LBD10)

Rice: Plays a critical role in rice tapetum cell development anther F-box protein Tapetum [S77] development and pollen formation. F-box (OsADF)

Plays an essential Brassica Non-coding RNA role in pollen campestris: Pollen-specific [S78] gene development and BcMF1 male fertility

Supplementary references

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S31 Ueda, K., et al. (2013) COLLAPSED ABNORMAL POLLEN1 gene encoding the arabinokinase-like protein is involved in pollen development in rice. Plant Physiol. 162, 858-871

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S78 Song, J.-H., et al. (2013) BcMF11, a novel non-coding RNA gene from Brassica campestris, is required for pollen development and male fertility. Plant Cell Rep. 32, 21-30

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