Peridinium Quinquecorne Var. Trispiniferum Var
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Molecular Data and the Evolutionary History of Dinoflagellates by Juan Fernando Saldarriaga Echavarria Diplom, Ruprecht-Karls-Un
Molecular data and the evolutionary history of dinoflagellates by Juan Fernando Saldarriaga Echavarria Diplom, Ruprecht-Karls-Universitat Heidelberg, 1993 A THESIS SUBMITTED IN PARTIAL FULFILMENT OF THE REQUIREMENTS FOR THE DEGREE OF DOCTOR OF PHILOSOPHY in THE FACULTY OF GRADUATE STUDIES Department of Botany We accept this thesis as conforming to the required standard THE UNIVERSITY OF BRITISH COLUMBIA November 2003 © Juan Fernando Saldarriaga Echavarria, 2003 ABSTRACT New sequences of ribosomal and protein genes were combined with available morphological and paleontological data to produce a phylogenetic framework for dinoflagellates. The evolutionary history of some of the major morphological features of the group was then investigated in the light of that framework. Phylogenetic trees of dinoflagellates based on the small subunit ribosomal RNA gene (SSU) are generally poorly resolved but include many well- supported clades, and while combined analyses of SSU and LSU (large subunit ribosomal RNA) improve the support for several nodes, they are still generally unsatisfactory. Protein-gene based trees lack the degree of species representation necessary for meaningful in-group phylogenetic analyses, but do provide important insights to the phylogenetic position of dinoflagellates as a whole and on the identity of their close relatives. Molecular data agree with paleontology in suggesting an early evolutionary radiation of the group, but whereas paleontological data include only taxa with fossilizable cysts, the new data examined here establish that this radiation event included all dinokaryotic lineages, including athecate forms. Plastids were lost and replaced many times in dinoflagellates, a situation entirely unique for this group. Histones could well have been lost earlier in the lineage than previously assumed. -
Protocols for Monitoring Harmful Algal Blooms for Sustainable Aquaculture and Coastal Fisheries in Chile (Supplement Data)
Protocols for monitoring Harmful Algal Blooms for sustainable aquaculture and coastal fisheries in Chile (Supplement data) Provided by Kyoko Yarimizu, et al. Table S1. Phytoplankton Naming Dictionary: This dictionary was constructed from the species observed in Chilean coast water in the past combined with the IOC list. Each name was verified with the list provided by IFOP and online dictionaries, AlgaeBase (https://www.algaebase.org/) and WoRMS (http://www.marinespecies.org/). The list is subjected to be updated. Phylum Class Order Family Genus Species Ochrophyta Bacillariophyceae Achnanthales Achnanthaceae Achnanthes Achnanthes longipes Bacillariophyta Coscinodiscophyceae Coscinodiscales Heliopeltaceae Actinoptychus Actinoptychus spp. Dinoflagellata Dinophyceae Gymnodiniales Gymnodiniaceae Akashiwo Akashiwo sanguinea Dinoflagellata Dinophyceae Gymnodiniales Gymnodiniaceae Amphidinium Amphidinium spp. Ochrophyta Bacillariophyceae Naviculales Amphipleuraceae Amphiprora Amphiprora spp. Bacillariophyta Bacillariophyceae Thalassiophysales Catenulaceae Amphora Amphora spp. Cyanobacteria Cyanophyceae Nostocales Aphanizomenonaceae Anabaenopsis Anabaenopsis milleri Cyanobacteria Cyanophyceae Oscillatoriales Coleofasciculaceae Anagnostidinema Anagnostidinema amphibium Anagnostidinema Cyanobacteria Cyanophyceae Oscillatoriales Coleofasciculaceae Anagnostidinema lemmermannii Cyanobacteria Cyanophyceae Oscillatoriales Microcoleaceae Annamia Annamia toxica Cyanobacteria Cyanophyceae Nostocales Aphanizomenonaceae Aphanizomenon Aphanizomenon flos-aquae -
Scrippsiella Trochoidea (F.Stein) A.R.Loebl
MOLECULAR DIVERSITY AND PHYLOGENY OF THE CALCAREOUS DINOPHYTES (THORACOSPHAERACEAE, PERIDINIALES) Dissertation zur Erlangung des Doktorgrades der Naturwissenschaften (Dr. rer. nat.) der Fakultät für Biologie der Ludwig-Maximilians-Universität München zur Begutachtung vorgelegt von Sylvia Söhner München, im Februar 2013 Erster Gutachter: PD Dr. Marc Gottschling Zweiter Gutachter: Prof. Dr. Susanne Renner Tag der mündlichen Prüfung: 06. Juni 2013 “IF THERE IS LIFE ON MARS, IT MAY BE DISAPPOINTINGLY ORDINARY COMPARED TO SOME BIZARRE EARTHLINGS.” Geoff McFadden 1999, NATURE 1 !"#$%&'(&)'*!%*!+! +"!,-"!'-.&/%)$"-"!0'* 111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 2& ")3*'4$%/5%6%*!+1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 7! 8,#$0)"!0'*+&9&6"*,+)-08!+ 111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 :! 5%*%-"$&0*!-'/,)!0'* 11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 ;! "#$!%"&'(!)*+&,!-!"#$!'./+,#(0$1$!2! './+,#(0$1$!-!3+*,#+4+).014!1/'!3+4$0&41*!041%%.5.01".+/! 67! './+,#(0$1$!-!/&"*.".+/!1/'!4.5$%"(4$! 68! ./!5+0&%!-!"#$!"#+*10+%,#1$*10$1$! 69! "#+*10+%,#1$*10$1$!-!5+%%.4!1/'!$:"1/"!'.;$*%."(! 6<! 3+4$0&41*!,#(4+)$/(!-!0#144$/)$!1/'!0#1/0$! 6=! 1.3%!+5!"#$!"#$%.%! 62! /0+),++0'* 1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111<=! -
Phylogenetic Analysis of Brachidinium Capitatum (Dinophyceae) from the Gulf of Mexico Indicates Membership in the Kareniaceae1
J. Phycol. 47, 366–374 (2011) Ó 2011 Phycological Society of America DOI: 10.1111/j.1529-8817.2011.00960.x PHYLOGENETIC ANALYSIS OF BRACHIDINIUM CAPITATUM (DINOPHYCEAE) FROM THE GULF OF MEXICO INDICATES MEMBERSHIP IN THE KARENIACEAE1 Darren W. Henrichs Department of Biology, Texas A&M University, College Station, Texas 77843, USA Heidi M. Sosik, Robert J. Olson Department of Biology, Woods Hole Oceanographic Institution, Woods Hole, Massachusetts 02543, USA and Lisa Campbell2 Department of Oceanography and Department of Biology, Texas A&M University, College Station, Texas 77843, USA Brachidinium capitatum F. J. R. Taylor, typically ITS, internal transcribed spacer; ML, maximum considered a rare oceanic dinoflagellate, and one likelihood; MP, maximum parsimony which has not been cultured, was observed at ele- ) vated abundances (up to 65 cells Æ mL 1) at a coastal station in the western Gulf of Mexico in the fall of 2007. Continuous data from the Imaging FlowCyto- Members of the genus Brachidinium have been bot (IFCB) provided cell images that documented observed in samples from throughout the world, yet the bloom during 3 weeks in early November. they remain poorly known because they have always Guided by IFCB observations, field collection per- been recorded at extremely low abundances. The mitted phylogenetic analysis and evaluation of the type species, B. capitatum, originally described by relationship between Brachidinium and Karenia. Taylor (1963) from the southwest Indian Ocean, Sequences from SSU, LSU, internal transcribed has also been identified from the Pacific Ocean spacer (ITS), and cox1 regions for B. capitatum were (Hernandez-Becerril and Bravo-Sierra 2004, Gomez compared with five other species of Karenia; all 2006), the northeast Atlantic Ocean, the Mediterra- B. -
Pigment-Based Chloroplast Types in Dinoflagellates
Vol. 465: 33–52, 2012 MARINE ECOLOGY PROGRESS SERIES Published September 28 doi: 10.3354/meps09879 Mar Ecol Prog Ser Pigment-based chloroplast types in dinoflagellates Manuel Zapata1,†, Santiago Fraga2, Francisco Rodríguez2,*, José L. Garrido1 1Instituto de Investigaciones Marinas, CSIC, c/ Eduardo Cabello 6, 36208 Vigo, Spain 2Instituto Español de Oceanografía, Subida a Radio Faro 50, 36390 Vigo, Spain ABSTRACT: Most photosynthetic dinoflagellates contain a chloroplast with peridinin as the major carotenoid. Chloroplasts from other algal lineages have been reported, suggesting multiple plas- tid losses and replacements through endosymbiotic events. The pigment composition of 64 dino- flagellate species (122 strains) was analysed by using high-performance liquid chromatography. In addition to chlorophyll (chl) a, both chl c2 and divinyl protochlorophyllide occurred in chl c-con- taining species. Chl c1 co-occurred with chl c2 in some peridinin-containing (e.g. Gambierdiscus spp.) and fucoxanthin-containing dinoflagellates (e.g. Kryptoperidinium foliaceum). Chl c3 occurred in dinoflagellates whose plastids contained 19’-acyloxyfucoxanthins (e.g. Karenia miki- motoi). Chl b was present in green dinoflagellates (Lepidodinium chlorophorum). Based on unique combinations of chlorophylls and carotenoids, 6 pigment-based chloroplast types were defined: Type 1: peridinin/dinoxanthin/chl c2 (Alexandrium minutum); Type 2: fucoxanthin/ 19’-acyloxy fucoxanthins/4-keto-19’-acyloxy-fucoxanthins/gyroxanthin diesters/chl c2, c3, mono - galac to syl-diacylglycerol-chl c2 (Karenia mikimotoi); Type 3: fucoxanthin/19’-acyloxyfucoxan- thins/gyroxanthin diesters/chl c2, c3 (Karlodinium veneficum); Type 4: fucoxanthin/chl c1, c2 (K. foliaceum); Type 5: alloxanthin/chl c2/phycobiliproteins (Dinophysis tripos); Type 6: neoxanthin/ violaxanthin/a major unknown carotenoid/chl b (Lepidodinium chlorophorum). -
Taxonomic Clarification of the Dinophyte Peridinium Acuminatum Ehrenb., ≡ Scrippsiella Acuminata, Comb
Phytotaxa 220 (3): 239–256 ISSN 1179-3155 (print edition) www.mapress.com/phytotaxa/ PHYTOTAXA Copyright © 2015 Magnolia Press Article ISSN 1179-3163 (online edition) http://dx.doi.org/10.11646/phytotaxa.220.3.3 Taxonomic clarification of the dinophyte Peridinium acuminatum Ehrenb., ≡ Scrippsiella acuminata, comb. nov. (Thoracosphaeraceae, Peridiniales) JULIANE KRETSCHMANN1, MALTE ELBRÄCHTER2, CARMEN ZINSSMEISTER1,3, SYLVIA SOEHNER1, MONIKA KIRSCH4, WOLF-HENNING KUSBER5 & MARC GOTTSCHLING1,* 1 Department Biologie, Systematische Botanik und Mykologie, GeoBio-Center, Ludwig-Maximilians-Universität München, Menzinger Str. 67, D – 80638 München, Germany 2 Wattenmeerstation Sylt des Alfred-Wegener-Institut, Helmholtz-Zentrum für Polar- und Meeresforschung, Hafenstr. 43, D – 25992 List/Sylt, Germany 3 Senckenberg am Meer, German Centre for Marine Biodiversity Research (DZMB), Südstrand 44, D – 26382 Wilhelmshaven, Germany 4 Universität Bremen, Fachbereich Geowissenschaften – Fachrichtung Historische Geologie/Paläontologie, Klagenfurter Straße, D – 28359 Bremen, Germany 5 Botanischer Garten und Botanisches Museum Berlin-Dahlem, Freie Universität Berlin, Königin-Luise-Straße 6-8, D – 14195 Berlin, Germany * Corresponding author (E-mail: [email protected]) Abstract Peridinium acuminatum (Peridiniales, Dinophyceae) was described in the first half of the 19th century, but the name has been rarely adopted since then. It was used as type of Goniodoma, Heteraulacus and Yesevius, providing various sources of nomenclatural and taxonomic confusion. Particularly, several early authors emphasised that the organisms investigated by C.G. Ehrenberg and S.F.N.R. von Stein were not conspecific, but did not perform the necessary taxonomic conclusions. The holotype of P. acuminatum is an illustration dating back to 1834, which makes the determination of the species ambiguous. We collected, isolated, and cultivated Scrippsiella acuminata, comb. -
Genes Functioned in Kleptoplastids of Dinophysis Are Derived From
www.nature.com/scientificreports OPEN Genes functioned in kleptoplastids of Dinophysis are derived from haptophytes rather than from Received: 30 October 2018 Accepted: 5 June 2019 cryptophytes Published: xx xx xxxx Yuki Hongo1, Akinori Yabuki2, Katsunori Fujikura 2 & Satoshi Nagai1 Toxic dinofagellates belonging to the genus Dinophysis acquire plastids indirectly from cryptophytes through the consumption of the ciliate Mesodinium rubrum. Dinophysis acuminata harbours three genes encoding plastid-related proteins, which are thought to have originated from fucoxanthin dinofagellates, haptophytes and cryptophytes via lateral gene transfer (LGT). Here, we investigate the origin of these plastid proteins via RNA sequencing of species related to D. fortii. We identifed 58 gene products involved in porphyrin, chlorophyll, isoprenoid and carotenoid biosyntheses as well as in photosynthesis. Phylogenetic analysis revealed that the genes associated with chlorophyll and carotenoid biosyntheses and photosynthesis originated from fucoxanthin dinofagellates, haptophytes, chlorarachniophytes, cyanobacteria and cryptophytes. Furthermore, nine genes were laterally transferred from fucoxanthin dinofagellates, whose plastids were derived from haptophytes. Notably, transcription levels of diferent plastid protein isoforms varied signifcantly. Based on these fndings, we put forth a novel hypothesis regarding the evolution of Dinophysis plastids that ancestral Dinophysis species acquired plastids from haptophytes or fucoxanthin dinofagellates, whereas LGT from cryptophytes occurred more recently. Therefore, the evolutionary convergence of genes following LGT may be unlikely in most cases. Plastids in photosynthetic dinofagellates are classifed into fve types according to their origin1. Plastids in most photosynthetic dinofagellates are bound by three membranes and contain peridinin as the major carotenoid. Although peridinin is considered to have originated from an endosymbiotic red alga1, this hypothesis remains controversial2. -
Seasonal Variations in Planktonic Community Structure and Production in an Atlantic Coastal Pond: the Importance of Nanoflagellates C
Seasonal Variations in Planktonic Community Structure and Production in an Atlantic Coastal Pond: The Importance of Nanoflagellates C. Dupuy, M. Ryckaert, S. Le Gall, H. J. Hartmann To cite this version: C. Dupuy, M. Ryckaert, S. Le Gall, H. J. Hartmann. Seasonal Variations in Planktonic Community Structure and Production in an Atlantic Coastal Pond: The Importance of Nanoflagellates. Microbial Ecology, Springer Verlag, 2007, 10.1007/s00248-006-9087-z. hal-01248036 HAL Id: hal-01248036 https://hal.archives-ouvertes.fr/hal-01248036 Submitted on 26 Dec 2016 HAL is a multi-disciplinary open access L’archive ouverte pluridisciplinaire HAL, est archive for the deposit and dissemination of sci- destinée au dépôt et à la diffusion de documents entific research documents, whether they are pub- scientifiques de niveau recherche, publiés ou non, lished or not. The documents may come from émanant des établissements d’enseignement et de teaching and research institutions in France or recherche français ou étrangers, des laboratoires abroad, or from public or private research centers. publics ou privés. Microbial Ecology Seasonal Variations in Planktonic Community Structure and Production in an Atlantic Coastal Pond: The Importance of Nanoflagellates C. Dupuy1, M. Ryckaert2, S. Le Gall1 and H. J. Hartmann1 (1) CRELA, UMR 6217, Poˆle Science Av. Michel Cre´peau, 17042 La Rochelle, France (2) DEL/IFREMER BP 5, 17137 L’Houmeau, France Received: 31 March 2006 / Accepted: 18 April 2006 / Online publication: 3 April 2007 Abstract was high. We suggest, first, that nanoflagellates represented the primary resource available in the pond and could The structure and summertime production of planktonic constitute an important food resource for higher trophic communities and the role of nondiatom planktonic cells levels, such as oysters, farmed in this type of pond. -
Observing Life in the Sea
May 24, 2019 Observing Life in the Sea Sanctuaries MBON Monterey Bay, Florida Keys, and Flower Garden Banks National Marine Sanctuaries Principal Investigators: Frank Muller-Karger (USF) Francisco Chávez (MBARI) Illustration by Kelly Lance© 2016 MBARI Partners: E. Montes/M. Breitbart/A. Djurhuus/N. Sawaya1, K. Pitz/R. Michisaki2, Maria Kavanaugh3, S. Gittings/A. Bruckner/K. Thompson4, B.Kirkpatrick5, M. Buchman6, A. DeVogelaere/J. Brown7, J. Field8, S. Bograd8, E. Hazen8, A. Boehm9, K. O'Keife/L. McEachron10, G. Graettinger11, J. Lamkin12, E. (Libby) Johns/C. Kelble/C. Sinigalliano/J. Hendee13, M. Roffer14 , B. Best15 Sanctuaries MBON 1 College of Marine Science, Univ. of South Florida (USF), St Petersburg, FL; 2 MBARI/CenCOOS, CA; 3 Oregon State University, Corvallis, OR; 4 NOAA Office of National Marine Sanctuaries (ONMS), Washington, DC; 5 Texas A&M University (TAMU/GCOOS), College Station, TX; Monterey Bay, 6 NOAA Florida Keys National Marine Sanctuary (FKNMS), Key West, FL; Florida Keys, and 7 NOAA Monterey Bay National Marine Sanct. (MBNMS), Monterey, CA; Flower Garden Banks 8 NOAA SW Fisheries Science Center (SWFSC), La Jolla, CA, 9 Center for Ocean Solutions, Stanford University, Pacific Grove, CA; National Marine Sanctuaries 10 Florida Fish and Wildlife Research Institute (FWRI), St Petersburg, FL; 11NOAA Office of Response and Restoration (ORR), Seattle, WA; Principal Investigators: 12NOAA SE Fisheries Science Center (SEFSC), Miami, FL; Frank Muller-Karger (USF) 13NOAA Atlantic Oceanographic and Meteorol. Lab. (AOML), Miami, -
Presencia De Los Dinoflagelados Ceratium Dens, C. Fusus Y C. Furca (Gonyaulacales: Ceratiaceae) En El Golfo De Nicoya, Costa Rica
Rev. Biol. Trop. 52(Suppl. 1): 115-120, 2004 www.ucr.ac.cr www.ots.ac.cr www.ots.duke.edu Presencia de los dinoflagelados Ceratium dens, C. fusus y C. furca (Gonyaulacales: Ceratiaceae) en el Golfo de Nicoya, Costa Rica Maribelle Vargas-Montero1 & Enrique Freer1,2 1 Centro de Investigación en Estructuras Microscópicas, Universidad de Costa Rica, Apdo. Postal 2060, San José, Costa Rica. 2 Escuela de Medicina, Universidad de Costa Rica, Apdo. Postal 2060, San José, Costa Rica. Fax: (506) 207-3182; [email protected] Recibido 31-X-2002. Corregido 21-IX-2003. Aceptado 11-XII-2003. Abstract: Harmful Algae Blooms (HAB) are a frequent phenomenon in the Gulf of Nicoya, Costa Rica, as in other parts of the world. The morphology and physiology of these microalgae are important because HAB species have adaptive characteristics. The production of high concentrations of paralytic toxins by Ceratium dinoflagellates has only been documented at the experimental level. However, this genus has been associated with the mortality of aquatic organisms, including oyster and shrimp larva, and fish, and with decreased water quality. Recently, fishermen reported massive mortality of encaged fish near Tortuga Island (Gulf of Nicoya). Samples were taken from an algal bloom that had produced an orange coloration and had a strong foul-smelling odor. Ultrastructural details were examined with scanning electron microscopy. The dinoflagellates Ceratium dens, C. furca and C. fusus were found in samples taken at the surface. The cell count revealed four million cells of this genus per liter. The morphological variability of these species is high; therefore electron microscopy is an useful tool in the ultrastructural study of these organisms. -
Redalyc.PERIDINIUM QUINQUECORNE VAR
Acta Botánica Mexicana ISSN: 0187-7151 [email protected] Instituto de Ecología, A.C. México Aké-Castillo, José Antolín; Vázquez, Gabriela PERIDINIUM QUINQUECORNE VAR. TRISPINIFERUM VAR. NOV. (DINOPHYCEAE) FROM A BRACKISH ENVIRONMENT Acta Botánica Mexicana, núm. 94, 2011, pp. 125-140 Instituto de Ecología, A.C. Pátzcuaro, México Available in: http://www.redalyc.org/articulo.oa?id=57415694005 How to cite Complete issue Scientific Information System More information about this article Network of Scientific Journals from Latin America, the Caribbean, Spain and Portugal Journal's homepage in redalyc.org Non-profit academic project, developed under the open access initiative Acta Botanica Mexicana 94: 125-140 (2011) PERIDINIUM QUINQUECORNE VAR. TRISPINIFERUM VAR. NOV. (DINOPHYCEAE) FROM A BRACKISH ENVIRONMENT JOSÉ ANTOLÍN AKÉ -CA STILLO 1 A ND GA BRIEL A VÁZQUEZ 2 1Universidad Veracruzana, Instituto de Ciencia Marinas y Pesquerías. Calle Hidalgo 617, Colonia Río Jamapa, 94290 Boca del Río, Veracruz, México. [email protected] .2Instituto de Ecología, A.C. Red de Ecología Funcional. Carretera antigua a Coatepec 351, El Haya, 91070 Xalapa, Veracruz, México. ABSTRACT Peridinium quinquecorne is a marine dinoflagellate that bears four characteristic thick spines on the hypotheca. Some specimens, which characteristics of shape, number and arrangement of plates matched those of this species, were found in phytoplankton samples collected at the Sontecomapan coastal lagoon, Mexico, in 1999, 2001, 2003 and 2007. However, the organisms collected bore three spines on the hypotheca instead of four, as described for P. quinquecorne. The number of spines and their position on antapical plates were features consistently observed over at least a nine years period. -
Parvodinium Gen. Nov. for the Umbonatum Group of Peridinium (Dinophyceae)
OHIO JOURNAL OF SCIENCE S. CARTY 103 Parvodinium gen. nov. for the Umbonatum Group of Peridinium (Dinophyceae) S C, Department of Biological and Environmental Science, Heidelberg University, Tiµ n, OH A¤¥¦§¨©¦: Peridinium is a genus of freshwater thecate dino¢ agellate. Because it was one of the earliest named genera (Ehrenberg 1832), many species placed in it were later removed to other genera. Genera continue to be extracted and Peridinium, while more closely de ned, still harbors groups of species unlike the type species, P. cinctum. It is the goal of this paper to remove one of the most dissimilar groups, the Umbonatum Group. Peridinium cinctum has no apical pore, three apical intercalary plates and ve cingular plates. Species in the Umbonatum Group have an apical pore, two apical intercalary plates and six cingular plates warranting their separation into a new genus, Parvodinium. OHIO J SCI 108 (5): 103-107, 2008 INTRODUCTION Cleistoperidinium, includes the type species, Peridinium cinctum Freshwater dinoÈ agellates are a group of algae found mostly in (O.F.Müller) Ehrenberg, which lacks an apical pore and has three open water habitats. As members of the phytoplankton they are apical intercalary plates in an asymetrical arrangement. It has been food for zooplankton and may form blooms during the temperate suggested that all species di³ ering from the type species should not summer. Most are recognizable as dinoÈ agellates by their golden be considered Peridinium (Fensome and others 1993). Groupe brown color and shape, but further taxonomic identity may be Umbonatum, in subgenus Poroperidinium, has an apical pore and challenging.